Wall clock time and date at job start Tue Mar 31 2020 18:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00164 * 2 1 4 4 C 1.38918 * 119.68399 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11367 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.75939 * 180.27438 * 5 4 3 7 7 C 1.50696 * 109.46809 * 269.71699 * 6 5 4 8 8 O 1.21277 * 120.00403 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99971 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00243 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46976 * 34.99954 * 10 9 7 12 12 C 1.52999 * 109.46892 * 275.00341 * 10 9 7 13 13 C 1.53000 * 109.47293 * 155.00346 * 10 9 7 14 14 C 1.53004 * 109.46840 * 295.00136 * 13 10 9 15 15 C 1.53002 * 109.47342 * 180.02562 * 14 13 10 16 16 C 1.52990 * 109.47436 * 180.02562 * 15 14 13 17 17 N 1.46505 * 109.47275 * 179.97438 * 16 15 14 18 18 C 1.36932 * 119.99903 * 179.97438 * 17 16 15 19 19 H 1.08007 * 120.00466 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99767 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00181 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47145 * 90.00532 * 22 20 18 24 24 H 1.48502 * 109.47244 * 210.00547 * 22 20 18 25 25 H 1.48498 * 109.47058 * 330.00489 * 22 20 18 26 26 C 1.38835 * 118.47905 * 359.97438 * 5 4 3 27 27 C 1.38040 * 119.29432 * 0.02562 * 26 5 4 28 28 N 1.31976 * 120.83318 * 359.97438 * 27 26 5 29 29 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47251 * 300.00706 * 1 2 3 31 31 H 1.08997 * 109.46674 * 60.00490 * 1 2 3 32 32 H 1.08004 * 120.44387 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.47409 * 29.72276 * 6 5 4 34 34 H 1.09003 * 109.46995 * 149.72068 * 6 5 4 35 35 H 0.97005 * 119.99613 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47624 * 60.00107 * 12 10 9 37 37 H 1.09001 * 109.46908 * 180.02562 * 12 10 9 38 38 H 1.09001 * 109.46995 * 299.99602 * 12 10 9 39 39 H 1.09001 * 109.47246 * 54.99631 * 13 10 9 40 40 H 1.08998 * 109.47070 * 175.00452 * 13 10 9 41 41 H 1.09001 * 109.46789 * 299.99775 * 14 13 10 42 42 H 1.09001 * 109.47256 * 59.99828 * 14 13 10 43 43 H 1.09010 * 109.46584 * 300.00105 * 15 14 13 44 44 H 1.09000 * 109.46789 * 59.99324 * 15 14 13 45 45 H 1.09010 * 109.47191 * 299.99575 * 16 15 14 46 46 H 1.09000 * 109.47813 * 59.99793 * 16 15 14 47 47 H 0.97000 * 119.99631 * 359.97438 * 17 16 15 48 48 H 0.96999 * 120.00537 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.35161 * 179.97438 * 26 5 4 50 50 H 1.08000 * 119.58580 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 5.5513 2.6268 -0.0079 7 6 6.0582 2.6690 1.4106 8 8 5.2764 2.6119 2.3360 9 7 7.3806 2.7693 1.6510 10 6 7.8735 2.8098 3.0300 11 1 7.2498 2.1732 3.6576 12 6 7.8190 4.2480 3.5490 13 6 9.3181 2.3074 3.0702 14 6 9.3560 0.8312 2.6700 15 6 10.8006 0.3286 2.7108 16 6 10.8386 -1.1474 2.3099 17 7 12.2219 -1.6285 2.3484 18 6 12.5036 -2.9292 2.0264 19 1 11.7061 -3.6005 1.7435 20 6 13.8143 -3.3848 2.0623 21 7 14.7862 -2.5668 2.4065 22 14 14.1988 -5.1591 1.6223 23 1 14.4656 -5.2610 0.1650 24 1 15.3961 -5.6081 2.3773 25 1 13.0403 -6.0187 1.9747 26 6 3.2505 3.6491 -0.0016 27 6 1.8772 3.5097 -0.0010 28 7 1.3186 2.3140 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 4.0229 0.3694 -0.0005 33 1 5.9786 1.7653 -0.5210 34 1 5.8442 3.5402 -0.5257 35 1 8.0060 2.8146 0.9109 36 1 6.7898 4.6059 3.5204 37 1 8.1861 4.2782 4.5749 38 1 8.4427 4.8846 2.9214 39 1 9.9242 2.8881 2.3748 40 1 9.7141 2.4205 4.0794 41 1 8.7499 0.2505 3.3654 42 1 8.9599 0.7180 1.6608 43 1 11.4070 0.9093 2.0156 44 1 11.1962 0.4417 3.7201 45 1 10.2320 -1.7284 3.0048 46 1 10.4431 -1.2602 1.3005 47 1 12.9381 -1.0255 2.6021 48 1 15.7021 -2.8852 2.4320 49 1 3.6994 4.6314 -0.0016 50 1 1.2519 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175272103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:04 Heat of formation + Delta-G solvation = -75.900674 kcal Electronic energy + Delta-G solvation = -27613.406996 eV Core-core repulsion = 23639.495056 eV Total energy + Delta-G solvation = -3973.911940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73568 -40.76572 -38.93570 -38.00671 -36.81469 -34.79763 -34.75271 -32.98790 -31.81798 -31.64838 -29.42740 -28.79827 -27.97463 -25.93103 -24.48377 -23.98777 -23.23942 -22.04393 -21.78056 -21.39039 -19.13059 -18.92246 -18.16172 -18.09558 -17.24753 -16.97082 -16.85214 -16.68272 -16.32248 -16.06561 -15.45683 -15.42284 -15.26641 -15.12544 -14.89208 -14.61126 -14.24186 -14.18880 -14.03992 -13.79284 -13.31025 -13.19727 -13.00601 -12.86731 -12.86102 -12.83783 -12.50441 -12.43456 -12.24607 -12.17722 -12.15982 -11.87950 -11.79642 -11.47799 -11.37840 -11.10440 -10.93915 -10.68641 -10.51699 -10.02404 -9.49418 -9.01447 -7.96777 -5.25911 0.16617 0.24276 1.46570 1.48529 1.57167 1.68547 2.10519 2.29181 2.55113 2.82823 3.34537 3.36450 3.57712 3.62014 3.96786 4.00067 4.07331 4.08562 4.14539 4.17508 4.19302 4.37433 4.39926 4.42042 4.44308 4.54321 4.60040 4.62338 4.66501 4.73051 4.78686 4.82089 4.89275 4.92002 4.95573 5.01031 5.04136 5.15433 5.28589 5.31142 5.34541 5.46209 5.46442 5.48418 5.54308 5.63785 6.23916 6.26186 6.62570 6.84953 7.31899 7.32519 8.08805 8.32125 9.26709 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011621 B = 0.001864 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.887020 B =15020.131271 C =16972.552745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.328 6.328 3 C 0.296 3.704 4 C -0.195 4.195 5 C 0.007 3.993 6 C -0.101 4.101 7 C 0.516 3.484 8 O -0.582 6.582 9 N -0.711 5.711 10 C 0.144 3.856 11 H 0.062 0.938 12 C -0.156 4.156 13 C -0.116 4.116 14 C -0.105 4.105 15 C -0.112 4.112 16 C 0.147 3.853 17 N -0.749 5.749 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.271 1.271 26 C -0.196 4.196 27 C 0.128 3.872 28 N -0.560 5.560 29 H 0.119 0.881 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.416 0.584 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.011 0.989 46 H 0.020 0.980 47 H 0.374 0.626 48 H 0.252 0.748 49 H 0.163 0.837 50 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.533 19.068 -6.864 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.235 6.235 3 C 0.118 3.882 4 C -0.216 4.216 5 C -0.001 4.001 6 C -0.140 4.140 7 C 0.303 3.697 8 O -0.462 6.462 9 N -0.364 5.364 10 C 0.040 3.960 11 H 0.080 0.920 12 C -0.214 4.214 13 C -0.154 4.154 14 C -0.143 4.143 15 C -0.150 4.150 16 C 0.021 3.979 17 N -0.392 5.392 18 C -0.382 4.382 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.196 1.196 26 C -0.216 4.216 27 C -0.026 4.026 28 N -0.285 5.285 29 H 0.137 0.863 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.254 0.746 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.038 0.962 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.181 0.819 50 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.943 18.490 -6.246 33.269 hybrid contribution 1.484 -0.896 -0.130 1.739 sum -25.459 17.594 -6.375 31.597 Atomic orbital electron populations 1.23014 0.75936 1.04465 1.02166 1.86217 1.24381 1.24915 1.88029 1.20026 0.89857 0.85024 0.93246 1.21096 0.92056 0.99933 1.08491 1.19764 0.95931 0.92015 0.92411 1.20808 0.90313 1.08810 0.94055 1.20801 0.82410 0.75039 0.91445 1.90736 1.56728 1.51213 1.47528 1.46023 1.07013 1.74038 1.09312 1.20906 0.94958 0.97206 0.82963 0.91979 1.22101 1.01621 0.95618 1.02101 1.21838 0.94647 0.95157 1.03765 1.21427 0.94773 0.96061 1.02027 1.21602 0.97925 0.94246 1.01255 1.20869 0.85399 0.94385 0.97241 1.42630 1.04256 1.09816 1.82464 1.19654 0.92625 0.88891 1.37014 0.90903 1.25611 0.95687 1.02364 1.03260 1.69810 0.99474 1.36316 1.56319 0.85113 0.77248 0.79716 0.77520 1.21105 1.21979 1.19616 1.22176 0.94646 1.00188 1.04557 1.22913 0.93683 0.93770 0.92270 1.67309 1.41585 0.99469 1.20121 0.86287 0.92848 0.92180 0.84199 0.85169 0.83533 0.74645 0.93819 0.91034 0.90846 0.89468 0.89961 0.93020 0.91162 0.91666 0.92649 0.97144 0.96233 0.79404 0.93907 0.81894 0.79541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.79 16 2 O -0.33 -7.56 10.48 -90.00 -0.94 -8.51 16 3 C 0.30 6.99 7.49 84.79 0.63 7.63 16 4 C -0.20 -4.13 9.74 22.47 0.22 -3.91 16 5 C 0.01 0.12 4.41 -19.69 -0.09 0.03 16 6 C -0.10 -1.05 5.88 29.10 0.17 -0.88 16 7 C 0.52 9.00 7.79 87.66 0.68 9.68 16 8 O -0.58 -16.07 15.70 -3.02 -0.05 -16.11 16 9 N -0.71 -9.62 4.53 -442.54 -2.00 -11.62 16 10 C 0.14 2.39 2.57 44.99 0.12 2.51 16 11 H 0.06 1.39 7.58 -2.39 -0.02 1.37 16 12 C -0.16 -2.28 9.48 71.98 0.68 -1.60 16 13 C -0.12 -1.86 4.75 30.60 0.15 -1.72 16 14 C -0.10 -2.29 5.10 30.60 0.16 -2.13 16 15 C -0.11 -3.34 5.33 30.59 0.16 -3.18 16 16 C 0.15 5.93 6.26 86.38 0.54 6.47 16 17 N -0.75 -38.99 5.60 -343.44 -1.92 -40.91 16 18 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 21 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 22 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 26 C -0.20 -2.81 9.81 22.37 0.22 -2.59 16 27 C 0.13 2.07 11.18 84.62 0.95 3.02 16 28 N -0.56 -12.19 9.22 -308.95 -2.85 -15.04 16 29 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 32 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.13 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.15 0.47 8.10 -2.39 -0.02 0.46 16 35 H 0.42 3.22 8.60 -92.70 -0.80 2.42 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.41 7.75 -2.39 -0.02 1.39 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 45 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.37 20.45 7.67 -92.71 -0.71 19.74 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 50 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -79.76 419.01 1.04 -78.72 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.58 Total: 26.71 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 7.07 Total: -2.39 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.49 Total: -126.97 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.99 Total: -24.62 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.76 1.04 -78.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175272103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.822 kcal (2) G-P(sol) polarization free energy of solvation -79.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds