Wall clock time and date at job start Tue Mar 31 2020 18:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.52999 * 109.47042 * 120.00508 * 2 1 3 5 5 C 1.53002 * 109.46939 * 185.00280 * 4 2 1 6 6 C 1.53003 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.46927 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46746 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99945 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99944 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00106 * 179.97438 * 9 8 7 12 12 N 1.31611 * 119.99882 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99798 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47265 * 89.99850 * 13 11 9 15 15 H 1.48495 * 109.46916 * 210.00080 * 13 11 9 16 16 H 1.48502 * 109.46871 * 329.99857 * 13 11 9 17 17 N 1.46505 * 109.46616 * 240.00027 * 2 1 3 18 18 C 1.34773 * 120.00093 * 85.00437 * 17 2 1 19 19 O 1.21503 * 119.99951 * 359.97438 * 18 17 2 20 20 C 1.48324 * 120.00209 * 179.71998 * 18 17 2 21 21 N 1.31496 * 127.15515 * 0.29964 * 20 18 17 22 22 O 1.21435 * 111.52815 * 179.97438 * 21 20 18 23 23 C 1.33187 * 111.56579 * 359.96447 * 22 21 20 24 24 C 1.35373 * 106.63985 * 359.79948 * 23 22 21 25 25 C 1.50067 * 124.93780 * 179.41657 * 24 23 22 26 26 C 1.53550 * 108.29259 * 344.50327 * 25 24 23 27 27 C 1.53103 * 109.51319 * 48.95423 * 26 25 24 28 28 C 1.50604 * 129.59786 * 180.19807 * 23 22 21 29 29 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46895 * 299.99497 * 1 2 3 31 31 H 1.08998 * 109.47131 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.46887 * 304.99588 * 4 2 1 33 33 H 1.08992 * 109.47657 * 64.99728 * 4 2 1 34 34 H 1.09000 * 109.46766 * 299.99382 * 5 4 2 35 35 H 1.08992 * 109.47398 * 59.99288 * 5 4 2 36 36 H 1.09001 * 109.46573 * 299.99959 * 6 5 4 37 37 H 1.08997 * 109.47097 * 59.99042 * 6 5 4 38 38 H 1.09000 * 109.47184 * 299.99530 * 7 6 5 39 39 H 1.08997 * 109.47767 * 59.99755 * 7 6 5 40 40 H 0.97004 * 120.00032 * 0.02562 * 8 7 6 41 41 H 0.97003 * 119.99690 * 179.97438 * 12 11 9 42 42 H 0.97000 * 119.99795 * 264.99551 * 17 2 1 43 43 H 1.09001 * 109.87383 * 224.68364 * 25 24 23 44 44 H 1.08996 * 109.51685 * 104.11224 * 25 24 23 45 45 H 1.09004 * 109.46365 * 288.94089 * 26 25 24 46 46 H 1.09007 * 109.46205 * 168.96774 * 26 25 24 47 47 H 1.08994 * 109.43348 * 170.06120 * 27 26 25 48 48 H 1.08999 * 109.38543 * 50.18939 * 27 26 25 49 49 H 1.09006 * 109.69102 * 282.90762 * 28 23 22 50 50 H 1.08999 * 109.69660 * 43.45839 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3341 2.5632 7 6 5.5997 -1.2266 2.6272 8 7 6.0880 -1.9163 3.8240 9 6 7.4300 -1.9524 4.0938 10 1 8.1285 -1.4728 3.4241 11 6 7.8926 -2.6054 5.2281 12 7 9.1825 -2.6406 5.4871 13 14 6.6844 -3.4343 6.3867 14 1 6.4785 -4.8425 5.9628 15 1 7.2263 -3.4076 7.7690 16 1 5.3876 -2.7115 6.3494 17 7 2.0183 -0.6906 -1.1963 18 6 2.1470 -0.0183 -2.3572 19 8 1.8577 1.1605 -2.4118 20 6 2.6472 -0.7160 -3.5668 21 7 2.9983 -1.9792 -3.6668 22 8 3.3662 -2.2517 -4.7916 23 6 3.3063 -1.1923 -5.5964 24 6 2.8390 -0.1642 -4.8498 25 6 2.6232 1.2336 -5.3514 26 6 3.3690 1.3877 -6.6847 27 6 3.0244 0.2117 -7.6024 28 6 3.6580 -1.0745 -7.0561 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.6402 -0.8743 3.4507 37 1 3.7864 -2.3844 2.5200 38 1 6.0340 -1.6868 1.7397 39 1 5.8885 -0.1765 2.6703 40 1 5.4606 -2.3474 4.4253 41 1 9.5058 -3.0966 6.2799 42 1 2.2490 -1.6318 -1.1527 43 1 3.0111 1.9508 -4.6280 44 1 1.5577 1.4052 -5.5041 45 1 4.4433 1.4021 -6.5004 46 1 3.0701 2.3209 -7.1623 47 1 3.4084 0.4081 -8.6034 48 1 1.9419 0.0922 -7.6463 49 1 4.7410 -1.0278 -7.1703 50 1 3.2682 -1.9358 -7.5985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175425868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:26 Heat of formation + Delta-G solvation = 5.824156 kcal Electronic energy + Delta-G solvation = -28369.343600 eV Core-core repulsion = 24398.975515 eV Total energy + Delta-G solvation = -3970.368085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.43744 -40.09042 -38.14807 -37.09799 -35.44954 -34.32028 -33.29379 -31.68673 -31.40753 -30.78979 -30.35901 -27.78208 -25.60216 -24.60019 -24.01541 -23.21619 -21.91319 -21.08858 -20.93332 -20.79756 -19.95839 -18.21141 -17.99546 -17.47049 -16.97581 -16.45829 -15.53346 -15.28716 -15.11720 -14.63760 -14.55217 -14.40608 -14.36536 -14.13052 -13.76623 -13.63049 -13.52793 -13.37341 -13.05090 -12.83780 -12.72380 -12.47697 -11.93346 -11.83464 -11.70462 -11.51533 -11.46750 -11.45174 -11.21587 -11.16003 -10.87187 -10.85129 -10.59206 -10.47912 -10.39067 -10.32712 -10.08621 -9.56599 -9.48446 -9.38042 -8.86372 -7.19604 -5.74078 -3.09135 0.77187 1.30745 2.46136 2.68271 2.87774 3.39089 3.41838 3.46473 3.61938 4.06123 4.20250 4.30823 4.43112 4.50377 4.57933 4.61578 4.71119 4.79400 4.89180 4.91969 4.98015 5.05370 5.16745 5.23235 5.28410 5.30797 5.33006 5.42431 5.48372 5.49856 5.53730 5.56899 5.59376 5.64975 5.76748 5.77842 5.84783 5.86113 6.00224 6.07636 6.10221 6.19298 6.26292 6.37186 6.79929 6.83663 7.09335 7.63225 7.81848 8.03078 8.45288 9.24772 9.97259 10.17761 11.44535 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002058 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.117419 B =13599.147641 C =14765.021393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.093 0.907 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.706 5.706 18 C 0.602 3.398 19 O -0.521 6.521 20 C -0.018 4.018 21 N -0.335 5.335 22 O 0.129 5.871 23 C -0.036 4.036 24 C -0.153 4.153 25 C -0.045 4.045 26 C -0.125 4.125 27 C -0.119 4.119 28 C -0.036 4.036 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.407 0.593 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.056 6.066 -28.644 35.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.358 5.358 18 C 0.386 3.614 19 O -0.395 6.395 20 C -0.176 4.176 21 N -0.037 5.037 22 O 0.056 5.944 23 C -0.101 4.101 24 C -0.158 4.158 25 C -0.082 4.082 26 C -0.162 4.162 27 C -0.156 4.156 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.242 0.758 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.014 5.986 -27.742 34.727 hybrid contribution -0.650 -0.602 0.749 1.160 sum -20.664 5.384 -26.993 34.418 Atomic orbital electron populations 1.22186 0.95030 1.02279 1.02689 1.21149 0.93988 0.97794 0.83373 0.88905 1.21951 0.96917 1.01053 0.96610 1.21525 0.93940 1.01281 0.98627 1.21771 0.97313 1.00311 0.97297 1.20627 0.90764 0.95704 0.90003 1.42738 1.05249 1.66372 1.25991 1.19091 0.82271 1.29256 1.06700 0.89291 1.24694 0.95659 1.00798 0.98278 1.69706 1.11708 1.48382 1.28565 0.86507 0.80932 0.79795 0.81078 1.21087 1.21710 1.20368 1.45994 1.66124 1.14549 1.09143 1.16819 0.77619 0.85737 0.81273 1.90787 1.49983 1.14522 1.84233 1.23028 1.06418 0.91322 0.96838 1.74584 1.13846 1.16087 0.99158 1.84693 1.61000 1.34507 1.14226 1.24164 1.03183 0.85990 0.96732 1.20663 1.04962 0.99033 0.91161 1.20004 1.01471 0.90048 0.96676 1.21734 1.01012 0.98622 0.94874 1.21655 1.01502 0.93081 0.99384 1.20296 1.02528 1.00099 0.84496 0.92377 0.91190 0.92161 0.89911 0.91229 0.91991 0.91707 0.92040 0.92139 0.95753 0.95733 0.80736 0.93096 0.75759 0.89152 0.89951 0.91194 0.90494 0.89919 0.91038 0.88502 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.14 1.39 2.57 -67.92 -0.17 1.21 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.23 4.75 -26.73 -0.13 -1.36 16 5 C -0.12 -1.43 5.10 -26.73 -0.14 -1.56 16 6 C -0.13 -1.98 5.33 -26.73 -0.14 -2.12 16 7 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 8 N -0.76 -18.95 5.41 -59.91 -0.32 -19.28 16 9 C -0.24 -7.20 10.47 -15.06 -0.16 -7.36 16 10 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 11 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 12 N -0.94 -30.16 13.97 55.49 0.78 -29.38 16 13 Si 0.89 22.69 27.73 -169.99 -4.71 17.98 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 17 N -0.71 -7.52 4.53 -54.59 -0.25 -7.77 16 18 C 0.60 7.47 7.81 -12.11 -0.09 7.38 16 19 O -0.52 -7.46 15.75 5.36 0.08 -7.38 16 20 C -0.02 -0.21 7.19 -82.82 -0.60 -0.81 16 21 N -0.33 -3.91 11.89 33.29 0.40 -3.51 16 22 O 0.13 1.31 11.18 19.20 0.21 1.52 16 23 C -0.04 -0.30 7.38 -35.38 -0.26 -0.56 16 24 C -0.15 -1.50 6.05 -104.91 -0.63 -2.13 16 25 C -0.04 -0.35 5.66 -27.90 -0.16 -0.51 16 26 C -0.12 -0.62 5.92 -26.39 -0.16 -0.78 16 27 C -0.12 -0.42 5.88 -26.46 -0.16 -0.58 16 28 C -0.04 -0.15 6.31 -27.71 -0.17 -0.33 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.36 8.69 5.53 -40.82 -0.23 8.47 16 41 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 42 H 0.41 4.04 8.38 -40.82 -0.34 3.70 16 43 H 0.09 0.83 7.84 -51.93 -0.41 0.43 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 46 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 47 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 49 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 404.67 15.07 6.10 6.10 Total: -1.00 -35.09 404.67 -9.00 -44.09 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.55 Total: 5.10 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.74 Total: -7.48 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.60 Total: -59.94 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: 0.30 Total: -5.85 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.98 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.09 -9.00 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175425868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.917 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds