Wall clock time and date at job start Tue Mar 31 2020 18:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.52999 * 109.47042 * 120.00508 * 2 1 3 5 5 C 1.53002 * 109.46939 * 185.00280 * 4 2 1 6 6 C 1.53003 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.46927 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46746 * 179.97438 * 7 6 5 9 9 C 1.36936 * 119.99945 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99944 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00106 * 179.97438 * 9 8 7 12 12 N 1.31611 * 119.99882 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99798 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47265 * 89.99850 * 13 11 9 15 15 H 1.48495 * 109.46916 * 210.00080 * 13 11 9 16 16 H 1.48502 * 109.46871 * 329.99857 * 13 11 9 17 17 N 1.46505 * 109.46616 * 240.00027 * 2 1 3 18 18 C 1.34773 * 120.00093 * 85.00437 * 17 2 1 19 19 O 1.21503 * 119.99951 * 359.97438 * 18 17 2 20 20 C 1.48324 * 120.00209 * 179.71998 * 18 17 2 21 21 N 1.31496 * 127.15515 * 0.29964 * 20 18 17 22 22 O 1.21435 * 111.52815 * 179.97438 * 21 20 18 23 23 C 1.33187 * 111.56579 * 359.96447 * 22 21 20 24 24 C 1.35373 * 106.63985 * 359.79948 * 23 22 21 25 25 C 1.50067 * 124.93780 * 179.41657 * 24 23 22 26 26 C 1.53550 * 108.29259 * 344.50327 * 25 24 23 27 27 C 1.53103 * 109.51319 * 48.95423 * 26 25 24 28 28 C 1.50604 * 129.59786 * 180.19807 * 23 22 21 29 29 H 1.09002 * 109.46899 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46895 * 299.99497 * 1 2 3 31 31 H 1.08998 * 109.47131 * 59.99913 * 1 2 3 32 32 H 1.09000 * 109.46887 * 304.99588 * 4 2 1 33 33 H 1.08992 * 109.47657 * 64.99728 * 4 2 1 34 34 H 1.09000 * 109.46766 * 299.99382 * 5 4 2 35 35 H 1.08992 * 109.47398 * 59.99288 * 5 4 2 36 36 H 1.09001 * 109.46573 * 299.99959 * 6 5 4 37 37 H 1.08997 * 109.47097 * 59.99042 * 6 5 4 38 38 H 1.09000 * 109.47184 * 299.99530 * 7 6 5 39 39 H 1.08997 * 109.47767 * 59.99755 * 7 6 5 40 40 H 0.97004 * 120.00032 * 0.02562 * 8 7 6 41 41 H 0.97003 * 119.99690 * 179.97438 * 12 11 9 42 42 H 0.97000 * 119.99795 * 264.99551 * 17 2 1 43 43 H 1.09001 * 109.87383 * 224.68364 * 25 24 23 44 44 H 1.08996 * 109.51685 * 104.11224 * 25 24 23 45 45 H 1.09004 * 109.46365 * 288.94089 * 26 25 24 46 46 H 1.09007 * 109.46205 * 168.96774 * 26 25 24 47 47 H 1.08994 * 109.43348 * 170.06120 * 27 26 25 48 48 H 1.08999 * 109.38543 * 50.18939 * 27 26 25 49 49 H 1.09006 * 109.69102 * 282.90762 * 28 23 22 50 50 H 1.08999 * 109.69660 * 43.45839 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0749 -1.3341 2.5632 7 6 5.5997 -1.2266 2.6272 8 7 6.0880 -1.9163 3.8240 9 6 7.4300 -1.9524 4.0938 10 1 8.1285 -1.4728 3.4241 11 6 7.8926 -2.6054 5.2281 12 7 9.1825 -2.6406 5.4871 13 14 6.6844 -3.4343 6.3867 14 1 6.4785 -4.8425 5.9628 15 1 7.2263 -3.4076 7.7690 16 1 5.3876 -2.7115 6.3494 17 7 2.0183 -0.6906 -1.1963 18 6 2.1470 -0.0183 -2.3572 19 8 1.8577 1.1605 -2.4118 20 6 2.6472 -0.7160 -3.5668 21 7 2.9983 -1.9792 -3.6668 22 8 3.3662 -2.2517 -4.7916 23 6 3.3063 -1.1923 -5.5964 24 6 2.8390 -0.1642 -4.8498 25 6 2.6232 1.2336 -5.3514 26 6 3.3690 1.3877 -6.6847 27 6 3.0244 0.2117 -7.6024 28 6 3.6580 -1.0745 -7.0561 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4259 35 1 3.8532 0.4369 1.3573 36 1 3.6402 -0.8743 3.4507 37 1 3.7864 -2.3844 2.5200 38 1 6.0340 -1.6868 1.7397 39 1 5.8885 -0.1765 2.6703 40 1 5.4606 -2.3474 4.4253 41 1 9.5058 -3.0966 6.2799 42 1 2.2490 -1.6318 -1.1527 43 1 3.0111 1.9508 -4.6280 44 1 1.5577 1.4052 -5.5041 45 1 4.4433 1.4021 -6.5004 46 1 3.0701 2.3209 -7.1623 47 1 3.4084 0.4081 -8.6034 48 1 1.9419 0.0922 -7.6463 49 1 4.7410 -1.0278 -7.1703 50 1 3.2682 -1.9358 -7.5985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175425868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:25 Heat of formation + Delta-G solvation = -16.673656 kcal Electronic energy + Delta-G solvation = -28370.319179 eV Core-core repulsion = 24398.975515 eV Total energy + Delta-G solvation = -3971.343664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.22116 -41.01641 -38.67766 -38.14557 -37.02213 -35.15338 -34.78288 -33.27143 -32.01487 -31.98163 -31.07547 -29.12168 -26.44220 -25.74534 -25.03548 -23.77629 -23.49990 -22.28025 -21.95868 -21.70010 -20.59245 -19.66031 -18.99031 -18.68159 -17.82848 -17.32320 -16.67367 -16.39102 -16.12205 -16.05349 -15.84712 -15.34242 -14.94632 -14.87338 -14.83482 -14.73312 -14.39372 -14.28971 -14.22378 -14.17525 -13.62982 -13.28045 -13.17482 -13.02333 -12.96437 -12.54840 -12.49495 -12.38917 -12.11634 -11.94458 -11.91469 -11.88213 -11.84561 -11.69044 -11.56360 -11.52529 -11.34908 -11.30405 -11.01076 -10.28241 -10.14254 -9.35317 -8.07025 -5.41749 -0.05024 0.58524 1.35193 1.40193 1.47757 1.73315 1.93730 1.96748 2.45618 2.81238 3.23621 3.39796 3.48451 3.62221 3.82409 3.91320 3.93142 3.97908 4.00423 4.08095 4.20928 4.25839 4.30651 4.36516 4.46817 4.50830 4.56220 4.56560 4.66497 4.80465 4.83440 4.86949 4.90678 4.90984 4.93546 4.99022 5.01338 5.15222 5.17292 5.18115 5.24609 5.30583 5.32512 5.41970 5.42613 5.44823 5.70065 6.17117 6.21024 6.82288 6.95771 7.03341 7.78851 8.00146 9.14602 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002058 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.117419 B =13599.147641 C =14765.021393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.115 4.115 7 C 0.150 3.850 8 N -0.760 5.760 9 C -0.244 4.244 10 H 0.050 0.950 11 C -0.068 4.068 12 N -0.984 5.984 13 Si 0.963 3.037 14 H -0.275 1.275 15 H -0.293 1.293 16 H -0.249 1.249 17 N -0.700 5.700 18 C 0.597 3.403 19 O -0.548 6.548 20 C -0.040 4.040 21 N -0.354 5.354 22 O 0.127 5.873 23 C -0.022 4.022 24 C -0.175 4.175 25 C -0.044 4.044 26 C -0.122 4.122 27 C -0.115 4.115 28 C -0.037 4.037 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.368 0.632 41 H 0.260 0.740 42 H 0.411 0.589 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.114 0.886 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.437 5.245 -29.576 37.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.153 4.153 7 C 0.024 3.976 8 N -0.406 5.406 9 C -0.375 4.375 10 H 0.068 0.932 11 C -0.259 4.259 12 N -0.634 5.634 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.219 1.219 16 H -0.173 1.173 17 N -0.351 5.351 18 C 0.382 3.618 19 O -0.425 6.425 20 C -0.197 4.197 21 N -0.056 5.056 22 O 0.054 5.946 23 C -0.086 4.086 24 C -0.180 4.180 25 C -0.081 4.081 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.075 4.075 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.201 0.799 41 H 0.068 0.932 42 H 0.247 0.753 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.089 0.911 49 H 0.132 0.868 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -22.435 5.166 -28.693 36.788 hybrid contribution 0.189 -0.295 0.929 0.993 sum -22.246 4.871 -27.764 35.909 Atomic orbital electron populations 1.22126 0.93706 1.02924 1.02746 1.21185 0.94949 0.96974 0.83142 0.90441 1.21870 0.94550 1.02042 0.96939 1.21444 0.95985 1.00436 0.96883 1.21652 0.93171 1.01451 0.99030 1.20831 0.94443 0.94478 0.87865 1.42735 1.03531 1.66824 1.27492 1.19058 0.83979 1.28413 1.06037 0.93156 1.25642 0.97831 1.02001 1.00451 1.69902 1.14277 1.49792 1.29446 0.85287 0.79179 0.78846 0.77740 1.20110 1.21903 1.17341 1.46032 1.65444 1.14669 1.08976 1.17005 0.77376 0.85537 0.81907 1.90759 1.51390 1.15592 1.84759 1.23164 1.07280 0.91805 0.97485 1.74554 1.14831 1.16147 1.00082 1.84654 1.60661 1.35208 1.14102 1.24924 1.01050 0.84680 0.97985 1.20993 1.05887 1.00331 0.90822 1.20027 1.01701 0.88576 0.97826 1.21745 1.00419 1.00214 0.93523 1.21686 1.01589 0.91801 1.00111 1.20626 1.03724 1.01422 0.81695 0.91390 0.89532 0.93707 0.88246 0.89869 0.92715 0.92239 0.91078 0.91199 0.96610 0.96494 0.79863 0.93174 0.75278 0.91340 0.90161 0.91351 0.89091 0.87209 0.91115 0.86835 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.14 2.65 2.57 44.99 0.12 2.77 16 3 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 4 C -0.12 -1.97 4.75 30.59 0.15 -1.83 16 5 C -0.11 -2.54 5.10 30.60 0.16 -2.38 16 6 C -0.12 -3.29 5.33 30.59 0.16 -3.12 16 7 C 0.15 6.03 6.26 86.38 0.54 6.57 16 8 N -0.76 -37.40 5.41 -343.45 -1.86 -39.26 16 9 C -0.24 -14.69 10.47 84.03 0.88 -13.81 16 10 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 12 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 13 Si 0.96 46.31 27.73 68.60 1.90 48.21 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 17 N -0.70 -14.89 4.53 -444.94 -2.01 -16.91 16 18 C 0.60 15.42 7.81 86.93 0.68 16.10 16 19 O -0.55 -16.52 15.75 -3.73 -0.06 -16.58 16 20 C -0.04 -0.98 7.19 42.55 0.31 -0.68 16 21 N -0.35 -8.39 11.89 -48.94 -0.58 -8.97 16 22 O 0.13 2.53 11.18 78.71 0.88 3.41 16 23 C -0.02 -0.34 7.38 24.99 0.18 -0.16 16 24 C -0.17 -3.48 6.05 -20.05 -0.12 -3.60 16 25 C -0.04 -0.71 5.66 29.83 0.17 -0.54 16 26 C -0.12 -1.05 5.92 30.81 0.18 -0.86 16 27 C -0.11 -0.51 5.88 30.77 0.18 -0.33 16 28 C -0.04 -0.22 6.31 29.96 0.19 -0.03 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.35 7.75 -2.39 -0.02 1.33 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.37 16.85 5.53 -92.71 -0.51 16.34 16 41 H 0.26 16.15 8.31 -92.71 -0.77 15.37 16 42 H 0.41 8.03 8.38 -92.71 -0.78 7.25 16 43 H 0.07 1.38 7.84 -2.39 -0.02 1.36 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16 46 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.07 0.37 8.12 -2.39 -0.02 0.35 16 49 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 50 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -78.68 404.67 3.09 -75.60 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.41 Total: 26.41 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 4.92 Total: -7.38 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -4.15 Total: -129.68 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.82 Total: -13.17 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -78.68 3.09 -75.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175425868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.921 kcal (2) G-P(sol) polarization free energy of solvation -78.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds