Wall clock time and date at job start Tue Mar 31 2020 18:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.52995 * 109.47365 * 120.00409 * 2 1 3 5 5 C 1.53000 * 109.47504 * 184.99782 * 4 2 1 6 6 C 1.53004 * 109.47257 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46665 * 180.02562 * 7 6 5 9 9 C 1.36946 * 119.99946 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99483 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00022 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00474 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99851 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47365 * 59.99751 * 13 11 9 15 15 H 1.48505 * 109.47031 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46767 * 299.99572 * 13 11 9 17 17 N 1.46500 * 109.46949 * 240.00294 * 2 1 3 18 18 C 1.34779 * 120.00169 * 85.00328 * 17 2 1 19 19 O 1.21282 * 119.99922 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00037 * 179.97438 * 18 17 2 21 21 O 1.42905 * 109.46972 * 179.97438 * 20 18 17 22 22 C 1.42899 * 113.99778 * 179.97438 * 21 20 18 23 23 C 1.50698 * 109.47163 * 180.02562 * 22 21 20 24 24 C 1.38653 * 120.78869 * 269.72447 * 23 22 21 25 25 C 1.38211 * 119.15990 * 179.79825 * 24 23 22 26 26 N 1.31874 * 120.76353 * 0.48207 * 25 24 23 27 27 C 1.31865 * 121.72578 * 359.74470 * 26 25 24 28 28 C 1.38207 * 120.76728 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46790 * 300.00241 * 1 2 3 31 31 H 1.09004 * 109.46622 * 59.99547 * 1 2 3 32 32 H 1.09005 * 109.47035 * 304.99823 * 4 2 1 33 33 H 1.09003 * 109.47343 * 64.99323 * 4 2 1 34 34 H 1.08996 * 109.47038 * 300.00271 * 5 4 2 35 35 H 1.09003 * 109.47012 * 60.00214 * 5 4 2 36 36 H 1.08993 * 109.47148 * 300.00044 * 6 5 4 37 37 H 1.09003 * 109.46665 * 60.00332 * 6 5 4 38 38 H 1.09002 * 109.47191 * 299.99734 * 7 6 5 39 39 H 1.08992 * 109.47053 * 60.00200 * 7 6 5 40 40 H 0.97000 * 120.00373 * 359.97438 * 8 7 6 41 41 H 0.96997 * 120.00199 * 180.02562 * 12 11 9 42 42 H 0.96996 * 119.99986 * 264.99730 * 17 2 1 43 43 H 1.09004 * 109.47103 * 59.99751 * 20 18 17 44 44 H 1.09000 * 109.47247 * 299.99628 * 20 18 17 45 45 H 1.08997 * 109.47442 * 300.00036 * 22 21 20 46 46 H 1.08997 * 109.47171 * 60.00232 * 22 21 20 47 47 H 1.07993 * 120.42265 * 359.97438 * 24 23 22 48 48 H 1.07992 * 119.61826 * 180.20519 * 25 24 23 49 49 H 1.07997 * 119.61889 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.41847 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3342 2.5631 7 6 5.5996 -1.2257 2.6278 8 7 6.0879 -1.9164 3.8240 9 6 7.4300 -1.9529 4.0937 10 1 8.1285 -1.4727 3.4243 11 6 7.8926 -2.6068 5.2272 12 7 7.0415 -3.1924 6.0427 13 14 9.7234 -2.6559 5.5955 14 1 10.2352 -1.2702 5.7467 15 1 9.9552 -3.4099 6.8537 16 1 10.4351 -3.3273 4.4784 17 7 2.0183 -0.6906 -1.1962 18 6 2.1471 -0.0182 -2.3572 19 8 1.8583 1.1585 -2.4117 20 6 2.6499 -0.7284 -3.5875 21 8 2.6973 0.1898 -4.6816 22 6 3.1639 -0.3858 -5.9035 23 6 3.1736 0.6660 -6.9827 24 6 2.0618 0.8691 -7.7858 25 6 2.1061 1.8459 -8.7626 26 7 3.1918 2.5729 -8.9409 27 6 4.2688 2.4042 -8.1990 28 6 4.2966 1.4497 -7.1998 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7516 -1.7716 1.2055 34 1 3.9994 -1.0728 0.4258 35 1 3.8533 0.4369 1.3573 36 1 3.6402 -0.8744 3.4506 37 1 3.7864 -2.3845 2.5198 38 1 6.0346 -1.6854 1.7403 39 1 5.8876 -0.1754 2.6713 40 1 5.4606 -2.3480 4.4249 41 1 7.3647 -3.6491 6.8350 42 1 2.2490 -1.6317 -1.1527 43 1 1.9777 -1.5507 -3.8326 44 1 3.6492 -1.1202 -3.3980 45 1 4.1741 -0.7698 -5.7619 46 1 2.5029 -1.2014 -6.1966 47 1 1.1715 0.2736 -7.6480 48 1 1.2432 2.0126 -9.3902 49 1 5.1395 3.0184 -8.3746 50 1 5.1819 1.3160 -6.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175874780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:07 Heat of formation + Delta-G solvation = -52.836351 kcal Electronic energy + Delta-G solvation = -27082.263869 eV Core-core repulsion = 23109.352073 eV Total energy + Delta-G solvation = -3972.911796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63217 -40.14054 -38.19638 -36.86567 -35.26852 -33.68194 -33.29949 -31.77428 -31.63805 -30.40524 -28.64427 -27.47277 -26.62347 -24.23164 -23.90459 -22.48291 -22.34498 -21.22324 -20.79651 -20.65417 -17.94077 -17.29454 -17.17675 -17.00781 -16.83716 -16.32311 -16.15142 -16.02411 -15.04991 -14.85493 -14.73542 -14.47875 -14.18126 -14.09312 -13.93507 -13.57887 -13.41046 -13.15801 -13.06761 -12.97465 -12.63256 -12.39793 -12.23818 -11.98709 -11.79504 -11.49018 -11.28737 -11.01958 -10.80650 -10.73218 -10.45535 -10.33191 -10.27799 -10.26797 -10.02531 -9.95456 -9.91330 -9.67422 -9.56949 -9.29512 -8.86169 -6.91176 -5.76080 -3.04627 0.67545 0.71791 2.36057 2.49170 3.31154 3.43959 3.48025 3.49344 3.67301 4.05315 4.20714 4.21529 4.40019 4.52221 4.58124 4.63436 4.65187 4.67685 4.73027 4.82944 4.85815 4.89406 4.94974 5.18000 5.22572 5.34970 5.37275 5.42240 5.50113 5.53366 5.58964 5.66396 5.75735 5.83910 5.86339 5.92805 6.07375 6.18018 6.24957 6.28237 6.31913 6.37006 6.44586 6.47574 6.88019 6.92040 7.23420 7.54173 7.69641 7.97798 8.43321 9.53970 10.13139 10.47683 11.46890 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.001627 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.640124 B =17209.875296 C =19057.618954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.721 5.721 18 C 0.514 3.486 19 O -0.519 6.519 20 C 0.042 3.958 21 O -0.355 6.355 22 C 0.099 3.901 23 C -0.045 4.045 24 C -0.151 4.151 25 C 0.096 3.904 26 N -0.482 5.482 27 C 0.097 3.903 28 C -0.150 4.150 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.401 0.599 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.136 0.864 48 H 0.158 0.842 49 H 0.159 0.841 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 3.868 -27.587 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.372 4.372 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.213 1.213 17 N -0.375 5.375 18 C 0.299 3.701 19 O -0.394 6.394 20 C -0.038 4.038 21 O -0.273 6.273 22 C 0.023 3.977 23 C -0.053 4.053 24 C -0.171 4.171 25 C -0.061 4.061 26 N -0.192 5.192 27 C -0.060 4.060 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.235 0.765 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.154 0.846 48 H 0.175 0.825 49 H 0.176 0.824 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.897 5.593 -28.265 32.436 hybrid contribution 1.025 -1.679 1.203 2.306 sum -13.872 3.914 -27.062 30.662 Atomic orbital electron populations 1.22179 0.95312 1.02098 1.02583 1.21059 0.93770 0.97766 0.83550 0.89264 1.21945 0.96899 1.00945 0.96680 1.21524 0.93927 1.01157 0.98619 1.21729 0.97263 1.00251 0.97115 1.20647 0.90999 0.95339 0.90551 1.42379 1.05314 1.64970 1.25210 1.19216 0.83937 1.28526 1.05499 0.91284 1.24743 0.97721 1.00929 0.97673 1.69650 1.32868 1.40736 1.15098 0.86256 0.85105 0.77491 0.77271 1.21259 1.21647 1.21301 1.45992 1.67871 1.14178 1.09454 1.20153 0.78254 0.87514 0.84171 1.90747 1.48394 1.15658 1.84591 1.22263 1.02129 0.92555 0.86861 1.88090 1.87070 1.35158 1.17016 1.21379 0.99820 0.93453 0.83088 1.19947 0.94013 0.96373 0.95015 1.22092 0.98629 0.99720 0.96666 1.22792 0.96161 0.91408 0.95761 1.67679 1.00154 1.25102 1.26240 1.22811 0.96363 0.95534 0.91293 1.22130 0.99324 0.96338 0.99155 0.92447 0.91408 0.92279 0.90099 0.91282 0.92177 0.91954 0.92028 0.92126 0.96682 0.96571 0.78350 0.93491 0.76453 0.90072 0.89773 0.91446 0.91600 0.84589 0.82511 0.82422 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.32 2.57 -67.93 -0.17 1.15 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C -0.13 -1.16 4.75 -26.73 -0.13 -1.29 16 5 C -0.11 -1.34 5.10 -26.73 -0.14 -1.48 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 8 N -0.73 -19.02 5.60 -59.91 -0.34 -19.36 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 13 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 N -0.72 -5.96 4.53 -53.81 -0.24 -6.20 16 18 C 0.51 5.39 7.87 -10.99 -0.09 5.31 16 19 O -0.52 -7.96 16.16 -14.35 -0.23 -8.19 16 20 C 0.04 0.30 6.42 36.01 0.23 0.53 16 21 O -0.36 -3.49 9.86 -55.14 -0.54 -4.03 16 22 C 0.10 0.64 6.11 36.00 0.22 0.86 16 23 C -0.05 -0.35 5.55 -104.32 -0.58 -0.93 16 24 C -0.15 -1.09 9.82 -39.44 -0.39 -1.47 16 25 C 0.10 0.74 11.18 -17.54 -0.20 0.54 16 26 N -0.48 -4.56 10.36 -13.25 -0.14 -4.70 16 27 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 28 C -0.15 -1.13 9.82 -39.44 -0.39 -1.52 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.40 2.27 8.60 -40.82 -0.35 1.92 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.33 8.10 -51.93 -0.42 -0.10 16 46 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 47 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 421.27 15.07 6.35 6.35 Total: -1.00 -37.16 421.27 -9.94 -47.10 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.61 Total: 4.61 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.88 Total: -5.33 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.01 Total: -58.02 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.78 Total: -12.23 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -37.16 -9.94 -47.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175874780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.739 kcal (2) G-P(sol) polarization free energy of solvation -37.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds