Wall clock time and date at job start Tue Mar 31 2020 18:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.52995 * 109.47365 * 120.00409 * 2 1 3 5 5 C 1.53000 * 109.47504 * 184.99782 * 4 2 1 6 6 C 1.53004 * 109.47257 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46665 * 180.02562 * 7 6 5 9 9 C 1.36946 * 119.99946 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99483 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00022 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00474 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99851 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47365 * 59.99751 * 13 11 9 15 15 H 1.48505 * 109.47031 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46767 * 299.99572 * 13 11 9 17 17 N 1.46500 * 109.46949 * 240.00294 * 2 1 3 18 18 C 1.34779 * 120.00169 * 85.00328 * 17 2 1 19 19 O 1.21282 * 119.99922 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00037 * 179.97438 * 18 17 2 21 21 O 1.42905 * 109.46972 * 179.97438 * 20 18 17 22 22 C 1.42899 * 113.99778 * 179.97438 * 21 20 18 23 23 C 1.50698 * 109.47163 * 180.02562 * 22 21 20 24 24 C 1.38653 * 120.78869 * 269.72447 * 23 22 21 25 25 C 1.38211 * 119.15990 * 179.79825 * 24 23 22 26 26 N 1.31874 * 120.76353 * 0.48207 * 25 24 23 27 27 C 1.31865 * 121.72578 * 359.74470 * 26 25 24 28 28 C 1.38207 * 120.76728 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46790 * 300.00241 * 1 2 3 31 31 H 1.09004 * 109.46622 * 59.99547 * 1 2 3 32 32 H 1.09005 * 109.47035 * 304.99823 * 4 2 1 33 33 H 1.09003 * 109.47343 * 64.99323 * 4 2 1 34 34 H 1.08996 * 109.47038 * 300.00271 * 5 4 2 35 35 H 1.09003 * 109.47012 * 60.00214 * 5 4 2 36 36 H 1.08993 * 109.47148 * 300.00044 * 6 5 4 37 37 H 1.09003 * 109.46665 * 60.00332 * 6 5 4 38 38 H 1.09002 * 109.47191 * 299.99734 * 7 6 5 39 39 H 1.08992 * 109.47053 * 60.00200 * 7 6 5 40 40 H 0.97000 * 120.00373 * 359.97438 * 8 7 6 41 41 H 0.96997 * 120.00199 * 180.02562 * 12 11 9 42 42 H 0.96996 * 119.99986 * 264.99730 * 17 2 1 43 43 H 1.09004 * 109.47103 * 59.99751 * 20 18 17 44 44 H 1.09000 * 109.47247 * 299.99628 * 20 18 17 45 45 H 1.08997 * 109.47442 * 300.00036 * 22 21 20 46 46 H 1.08997 * 109.47171 * 60.00232 * 22 21 20 47 47 H 1.07993 * 120.42265 * 359.97438 * 24 23 22 48 48 H 1.07992 * 119.61826 * 180.20519 * 25 24 23 49 49 H 1.07997 * 119.61889 * 179.97438 * 27 26 25 50 50 H 1.08001 * 120.41847 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3342 2.5631 7 6 5.5996 -1.2257 2.6278 8 7 6.0879 -1.9164 3.8240 9 6 7.4300 -1.9529 4.0937 10 1 8.1285 -1.4727 3.4243 11 6 7.8926 -2.6068 5.2272 12 7 7.0415 -3.1924 6.0427 13 14 9.7234 -2.6559 5.5955 14 1 10.2352 -1.2702 5.7467 15 1 9.9552 -3.4099 6.8537 16 1 10.4351 -3.3273 4.4784 17 7 2.0183 -0.6906 -1.1962 18 6 2.1471 -0.0182 -2.3572 19 8 1.8583 1.1585 -2.4117 20 6 2.6499 -0.7284 -3.5875 21 8 2.6973 0.1898 -4.6816 22 6 3.1639 -0.3858 -5.9035 23 6 3.1736 0.6660 -6.9827 24 6 2.0618 0.8691 -7.7858 25 6 2.1061 1.8459 -8.7626 26 7 3.1918 2.5729 -8.9409 27 6 4.2688 2.4042 -8.1990 28 6 4.2966 1.4497 -7.1998 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7516 -1.7716 1.2055 34 1 3.9994 -1.0728 0.4258 35 1 3.8533 0.4369 1.3573 36 1 3.6402 -0.8744 3.4506 37 1 3.7864 -2.3845 2.5198 38 1 6.0346 -1.6854 1.7403 39 1 5.8876 -0.1754 2.6713 40 1 5.4606 -2.3480 4.4249 41 1 7.3647 -3.6491 6.8350 42 1 2.2490 -1.6317 -1.1527 43 1 1.9777 -1.5507 -3.8326 44 1 3.6492 -1.1202 -3.3980 45 1 4.1741 -0.7698 -5.7619 46 1 2.5029 -1.2014 -6.1966 47 1 1.1715 0.2736 -7.6480 48 1 1.2432 2.0126 -9.3902 49 1 5.1395 3.0184 -8.3746 50 1 5.1819 1.3160 -6.5958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175874780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:06 Heat of formation + Delta-G solvation = -77.671127 kcal Electronic energy + Delta-G solvation = -27083.340786 eV Core-core repulsion = 23109.352073 eV Total energy + Delta-G solvation = -3973.988712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.19053 -40.88561 -38.81338 -37.87890 -36.78152 -34.77425 -34.23147 -33.06240 -32.16339 -31.83061 -29.23343 -28.80199 -27.16927 -25.90407 -24.43932 -23.76213 -23.00060 -22.19418 -21.97016 -21.50804 -19.12276 -18.57001 -17.89307 -17.70616 -17.46659 -16.99014 -16.81589 -16.67863 -16.53001 -16.16741 -15.55448 -15.44987 -15.25494 -15.15858 -14.76793 -14.58855 -14.54205 -14.17961 -14.09462 -13.98056 -13.34731 -13.14208 -13.03315 -12.87964 -12.83653 -12.76348 -12.47742 -12.43768 -12.26347 -12.19669 -11.87837 -11.80943 -11.47996 -11.39167 -10.94404 -10.92860 -10.77310 -10.67786 -10.48454 -10.10797 -10.07787 -9.01183 -7.96400 -5.25694 0.12289 0.18015 1.46744 1.49990 1.56330 1.60665 1.88246 2.55474 2.74093 3.15082 3.36831 3.56537 3.59060 3.71507 3.77428 3.86958 4.03897 4.06954 4.11148 4.15317 4.18733 4.23837 4.29248 4.36296 4.42542 4.42620 4.45625 4.61306 4.65648 4.69060 4.79183 4.86917 4.88514 4.93668 4.97351 4.99715 5.03074 5.13112 5.27653 5.32336 5.32535 5.45283 5.46080 5.53919 5.58964 5.73905 5.98065 6.26361 6.59525 6.98566 7.27837 7.32197 8.09158 8.32405 9.26866 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012290 B = 0.001627 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.640124 B =17209.875296 C =19057.618954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.253 4.253 10 H 0.073 0.927 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.276 1.276 17 N -0.708 5.708 18 C 0.508 3.492 19 O -0.578 6.578 20 C 0.044 3.956 21 O -0.392 6.392 22 C 0.098 3.902 23 C -0.061 4.061 24 C -0.156 4.156 25 C 0.082 3.918 26 N -0.513 5.513 27 C 0.082 3.918 28 C -0.159 4.159 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.417 0.583 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.157 0.843 48 H 0.178 0.822 49 H 0.175 0.825 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 2.436 -28.342 32.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.385 4.385 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.202 1.202 17 N -0.363 5.363 18 C 0.295 3.705 19 O -0.457 6.457 20 C -0.035 4.035 21 O -0.311 6.311 22 C 0.023 3.977 23 C -0.069 4.069 24 C -0.175 4.175 25 C -0.074 4.074 26 N -0.223 5.223 27 C -0.074 4.074 28 C -0.179 4.179 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.174 0.826 48 H 0.195 0.805 49 H 0.192 0.808 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.943 4.137 -29.050 32.929 hybrid contribution 1.019 -1.211 1.410 2.119 sum -13.924 2.926 -27.641 31.088 Atomic orbital electron populations 1.22114 0.94410 1.02988 1.02032 1.20935 0.94413 0.96599 0.84016 0.91906 1.21838 0.94694 1.02126 0.96670 1.21430 0.95816 1.00030 0.97051 1.21601 0.93675 1.01039 0.98706 1.20866 0.94317 0.94183 0.88529 1.42618 1.04478 1.65380 1.26676 1.19636 0.85393 1.27933 1.05537 0.90877 1.25592 1.02215 1.01126 0.97751 1.69806 1.34760 1.41824 1.15506 0.85192 0.79852 0.77613 0.76978 1.20516 1.21875 1.20224 1.45909 1.66849 1.14819 1.08673 1.20858 0.77239 0.86967 0.85444 1.90722 1.51148 1.18263 1.85561 1.22404 1.04087 0.92250 0.84804 1.88037 1.87608 1.37057 1.18406 1.21538 1.01302 0.93299 0.81583 1.20307 0.94184 0.96867 0.95577 1.22371 0.99282 0.99659 0.96218 1.23212 0.96435 0.91419 0.96332 1.67685 1.01081 1.26195 1.27293 1.23161 0.96729 0.96092 0.91455 1.22366 1.00055 0.96241 0.99191 0.90747 0.90729 0.94120 0.89756 0.89356 0.91182 0.92959 0.92620 0.91628 0.96230 0.97127 0.79414 0.93901 0.74557 0.86649 0.87348 0.89826 0.89258 0.82570 0.80533 0.80826 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 2.50 2.57 44.99 0.12 2.61 16 3 H 0.06 1.45 7.58 -2.39 -0.02 1.43 16 4 C -0.12 -1.85 4.75 30.59 0.15 -1.70 16 5 C -0.11 -2.28 5.10 30.60 0.16 -2.12 16 6 C -0.11 -3.30 5.33 30.60 0.16 -3.14 16 7 C 0.15 5.87 6.26 86.38 0.54 6.41 16 8 N -0.75 -38.70 5.60 -343.46 -1.92 -40.62 16 9 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 10 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 11 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.97 -59.33 13.06 21.65 0.28 -59.04 16 13 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 17 N -0.71 -10.29 4.53 -442.54 -2.00 -12.30 16 18 C 0.51 10.07 7.87 87.66 0.69 10.76 16 19 O -0.58 -18.04 16.16 16.00 0.26 -17.78 16 20 C 0.04 0.52 6.42 71.24 0.46 0.98 16 21 O -0.39 -7.12 9.86 -129.94 -1.28 -8.40 16 22 C 0.10 1.06 6.11 71.24 0.44 1.50 16 23 C -0.06 -0.89 5.55 -19.67 -0.11 -1.00 16 24 C -0.16 -2.10 9.82 22.36 0.22 -1.88 16 25 C 0.08 1.25 11.18 84.68 0.95 2.19 16 26 N -0.51 -9.80 10.36 -195.84 -2.03 -11.83 16 27 C 0.08 1.32 11.18 84.68 0.95 2.26 16 28 C -0.16 -2.34 9.82 22.36 0.22 -2.12 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.38 7.75 -2.39 -0.02 1.37 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 41 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.42 3.37 8.60 -92.71 -0.80 2.57 16 43 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 46 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 47 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 50 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -81.92 421.27 1.66 -80.26 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.58 Total: 26.00 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.92 Total: -4.41 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -5.68 Total: -123.79 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.02 Total: -26.18 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -81.92 1.66 -80.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175874780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.587 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds