Wall clock time and date at job start Tue Mar 31 2020 18:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47219 * 2 1 4 4 C 1.52996 * 109.47413 * 239.99428 * 2 1 3 5 5 C 1.52997 * 109.47131 * 174.99889 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46941 * 60.00309 * 13 11 9 15 15 H 1.48494 * 109.47398 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47298 * 300.00594 * 13 11 9 17 17 N 1.46502 * 109.46680 * 119.99620 * 2 1 3 18 18 C 1.34781 * 120.00059 * 274.99983 * 17 2 1 19 19 O 1.21277 * 119.99934 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99755 * 180.02562 * 18 17 2 21 21 O 1.42908 * 109.46859 * 180.02562 * 20 18 17 22 22 C 1.42892 * 114.00036 * 180.02562 * 21 20 18 23 23 C 1.50699 * 109.47308 * 180.02562 * 22 21 20 24 24 C 1.38657 * 120.78806 * 269.72000 * 23 22 21 25 25 C 1.38208 * 119.15995 * 179.79562 * 24 23 22 26 26 N 1.31867 * 120.76204 * 0.48929 * 25 24 23 27 27 C 1.31872 * 121.72759 * 359.73738 * 26 25 24 28 28 C 1.38198 * 120.76588 * 0.02572 * 27 26 25 29 29 H 1.09010 * 109.47120 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47133 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.47095 * 60.00889 * 1 2 3 32 32 H 1.09001 * 109.46993 * 54.99758 * 4 2 1 33 33 H 1.09004 * 109.47298 * 295.00173 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99931 * 95.00625 * 17 2 1 43 43 H 1.08993 * 109.47546 * 299.99667 * 20 18 17 44 44 H 1.09000 * 109.47454 * 60.00643 * 20 18 17 45 45 H 1.08999 * 109.47068 * 300.00053 * 22 21 20 46 46 H 1.09000 * 109.47177 * 59.99935 * 22 21 20 47 47 H 1.08003 * 120.41631 * 359.97438 * 24 23 22 48 48 H 1.07993 * 119.61443 * 180.20491 * 25 24 23 49 49 H 1.08005 * 119.61214 * 180.02562 * 27 26 25 50 50 H 1.07997 * 120.41870 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0749 -1.3342 -2.5631 7 6 5.5998 -1.2267 -2.6271 8 7 6.0881 -1.9174 -3.8232 9 6 7.4302 -1.9538 -4.0929 10 1 8.1287 -1.4736 -3.4235 11 6 7.8930 -2.6087 -5.2258 12 7 7.0419 -3.1943 -6.0413 13 14 9.7238 -2.6589 -5.5933 14 1 10.4348 -3.3299 -4.4756 15 1 9.9557 -3.4126 -6.8516 16 1 10.2364 -1.2734 -5.7452 17 7 2.0183 -0.6906 1.1963 18 6 2.1469 -0.0181 2.3572 19 8 1.8581 1.1585 2.4117 20 6 2.6497 -0.7284 3.5876 21 8 2.6971 0.1898 4.6817 22 6 3.1635 -0.3857 5.9036 23 6 3.1720 0.6658 6.9831 24 6 4.2963 1.4465 7.2046 25 6 4.2656 2.4039 8.2009 26 7 3.1878 2.5721 8.9418 27 6 2.1025 1.8449 8.7623 28 6 2.0577 0.8717 7.7820 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.6054 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2054 34 1 3.9994 -1.0728 -0.4257 35 1 3.8532 0.4369 -1.3573 36 1 3.7865 -2.3844 -2.5197 37 1 3.6403 -0.8744 -3.4506 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6869 -1.7395 40 1 5.4608 -2.3484 -4.4245 41 1 7.3652 -3.6516 -6.8332 42 1 2.2490 -1.6317 1.1527 43 1 1.9775 -1.5506 3.8327 44 1 3.6491 -1.1201 3.3981 45 1 2.5025 -1.2014 6.1966 46 1 4.1738 -0.7697 5.7620 47 1 5.1837 1.3100 6.6044 48 1 5.1360 3.0183 8.3776 49 1 1.2386 2.0118 9.3886 50 1 1.1660 0.2791 7.6402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175874781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:09 Heat of formation + Delta-G solvation = -77.658173 kcal Electronic energy + Delta-G solvation = -27083.376147 eV Core-core repulsion = 23109.387996 eV Total energy + Delta-G solvation = -3973.988151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19095 -40.88612 -38.81376 -37.87941 -36.78186 -34.77458 -34.23115 -33.06269 -32.16381 -31.83065 -29.23376 -28.80214 -27.16914 -25.90395 -24.43905 -23.76217 -23.00068 -22.19408 -21.97022 -21.50800 -19.12292 -18.57018 -17.89280 -17.70703 -17.46670 -16.98883 -16.81706 -16.67895 -16.52968 -16.16762 -15.55412 -15.45005 -15.25491 -15.15927 -14.76800 -14.58820 -14.54248 -14.17982 -14.09447 -13.98072 -13.34751 -13.14222 -13.03316 -12.87940 -12.83679 -12.76322 -12.47729 -12.43776 -12.26301 -12.19666 -11.87835 -11.80966 -11.47962 -11.39199 -10.94393 -10.92862 -10.77344 -10.67764 -10.48444 -10.10828 -10.07778 -9.01204 -7.96398 -5.25674 0.12281 0.18038 1.46743 1.49988 1.56343 1.60683 1.88244 2.55492 2.74095 3.15071 3.36841 3.56533 3.59062 3.71512 3.77409 3.86950 4.03900 4.06956 4.11146 4.15335 4.18740 4.23870 4.29256 4.36268 4.42549 4.42613 4.45626 4.61306 4.65650 4.69041 4.79204 4.86906 4.88505 4.93667 4.97359 4.99713 5.03078 5.13121 5.27658 5.32335 5.32533 5.45276 5.46099 5.53921 5.58971 5.73900 5.98081 6.26344 6.59527 6.98574 7.27838 7.32188 8.09173 8.32423 9.26878 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.001626 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.075294 B =17210.773313 C =19058.459555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.253 4.253 10 H 0.073 0.927 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.276 1.276 15 H -0.293 1.293 16 H -0.279 1.279 17 N -0.708 5.708 18 C 0.508 3.492 19 O -0.578 6.578 20 C 0.044 3.956 21 O -0.392 6.392 22 C 0.098 3.902 23 C -0.061 4.061 24 C -0.159 4.159 25 C 0.082 3.918 26 N -0.513 5.513 27 C 0.082 3.918 28 C -0.156 4.156 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.011 0.989 39 H 0.020 0.980 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.417 0.583 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.152 0.848 48 H 0.175 0.825 49 H 0.178 0.822 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 2.441 28.337 32.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.385 4.385 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.202 1.202 15 H -0.219 1.219 16 H -0.205 1.205 17 N -0.363 5.363 18 C 0.295 3.705 19 O -0.457 6.457 20 C -0.035 4.035 21 O -0.311 6.311 22 C 0.023 3.977 23 C -0.069 4.069 24 C -0.179 4.179 25 C -0.074 4.074 26 N -0.223 5.223 27 C -0.074 4.074 28 C -0.175 4.175 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.254 0.746 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.169 0.831 48 H 0.192 0.808 49 H 0.195 0.805 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.944 4.142 29.045 32.926 hybrid contribution 1.019 -1.211 -1.409 2.119 sum -13.925 2.931 27.636 31.084 Atomic orbital electron populations 1.22115 0.94411 1.02989 1.02031 1.20935 0.94412 0.96599 0.84016 0.91906 1.21838 0.94694 1.02126 0.96670 1.21430 0.95817 1.00030 0.97051 1.21602 0.93673 1.01039 0.98708 1.20865 0.94315 0.94180 0.88533 1.42617 1.04475 1.65405 1.26654 1.19635 0.85392 1.27908 1.05569 0.90880 1.25591 1.02217 1.01116 0.97761 1.69803 1.34763 1.41793 1.15534 0.85191 0.79849 0.77611 0.76979 1.20215 1.21873 1.20528 1.45911 1.66853 1.14820 1.08671 1.20856 0.77239 0.86966 0.85443 1.90721 1.51144 1.18265 1.85560 1.22404 1.04087 0.92249 0.84804 1.88036 1.87611 1.37061 1.18403 1.21538 1.01304 0.93302 0.81578 1.20307 0.94169 0.96875 0.95583 1.22368 1.00054 0.96241 0.99189 1.23162 0.96713 0.96083 0.91479 1.67685 1.01093 1.26178 1.27300 1.23210 0.96443 0.91436 0.96308 1.22367 0.99280 0.99665 0.96223 0.90749 0.94119 0.90728 0.89756 0.89356 0.91183 0.92958 0.91635 0.92615 0.97131 0.96228 0.79414 0.93900 0.74557 0.86651 0.87348 0.89271 0.89818 0.83069 0.80824 0.80532 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.14 2.50 2.57 44.99 0.12 2.61 16 3 H 0.06 1.45 7.58 -2.39 -0.02 1.43 16 4 C -0.12 -1.85 4.75 30.59 0.15 -1.70 16 5 C -0.11 -2.28 5.10 30.60 0.16 -2.12 16 6 C -0.11 -3.30 5.33 30.60 0.16 -3.14 16 7 C 0.15 5.87 6.26 86.38 0.54 6.41 16 8 N -0.75 -38.70 5.60 -343.47 -1.92 -40.62 16 9 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 10 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 11 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 13 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 N -0.71 -10.29 4.53 -442.53 -2.00 -12.30 16 18 C 0.51 10.07 7.87 87.66 0.69 10.76 16 19 O -0.58 -18.04 16.16 16.02 0.26 -17.78 16 20 C 0.04 0.52 6.42 71.24 0.46 0.98 16 21 O -0.39 -7.12 9.86 -129.94 -1.28 -8.40 16 22 C 0.10 1.06 6.11 71.24 0.44 1.50 16 23 C -0.06 -0.89 5.55 -19.67 -0.11 -1.00 16 24 C -0.16 -2.34 9.82 22.36 0.22 -2.12 16 25 C 0.08 1.32 11.18 84.68 0.95 2.26 16 26 N -0.51 -9.80 10.36 -195.85 -2.03 -11.83 16 27 C 0.08 1.25 11.18 84.68 0.95 2.19 16 28 C -0.16 -2.10 9.82 22.36 0.22 -1.88 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.07 1.38 7.75 -2.39 -0.02 1.37 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 41 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.42 3.37 8.60 -92.71 -0.80 2.57 16 43 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.09 0.51 8.10 -2.39 -0.02 0.49 16 46 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 47 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 49 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 50 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -81.92 421.27 1.66 -80.25 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.58 Total: 26.00 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.92 Total: -4.41 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -5.68 Total: -123.79 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.02 Total: -26.18 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -81.92 1.66 -80.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175874781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.594 kcal (2) G-P(sol) polarization free energy of solvation -81.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds