Wall clock time and date at job start Tue Mar 31 2020 18:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9 16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21612 * 120.00049 * 0.02562 * 18 17 2 20 20 C 1.47419 * 120.00043 * 180.02562 * 18 17 2 21 21 C 1.36095 * 126.45201 * 179.68570 * 20 18 17 22 22 O 1.34257 * 106.94932 * 179.89828 * 21 20 18 23 23 C 1.34052 * 108.22983 * 0.37184 * 22 21 20 24 24 C 1.50694 * 125.37741 * 179.80069 * 23 22 21 25 25 C 1.52999 * 109.47404 * 269.95580 * 24 23 22 26 26 C 1.52993 * 117.50096 * 243.75413 * 25 24 23 27 27 C 1.52990 * 117.50302 * 175.08995 * 25 24 23 28 28 N 1.29939 * 109.23797 * 359.76442 * 23 22 21 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 36 36 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 37 37 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 38 38 H 1.09001 * 109.46908 * 300.00434 * 7 6 5 39 39 H 1.08996 * 109.46687 * 59.99974 * 7 6 5 40 40 H 0.96999 * 120.00405 * 0.02562 * 8 7 6 41 41 H 0.97006 * 119.99411 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 43 43 H 1.07998 * 126.52195 * 0.04511 * 21 20 18 44 44 H 1.08999 * 109.47028 * 29.95870 * 24 23 22 45 45 H 1.08999 * 109.47109 * 149.95948 * 24 23 22 46 46 H 1.09000 * 115.54577 * 29.41677 * 25 24 23 47 47 H 1.09002 * 117.50045 * 359.97438 * 26 25 24 48 48 H 1.09008 * 117.50350 * 145.01943 * 26 25 24 49 49 H 1.09001 * 117.49900 * 214.98126 * 27 25 24 50 50 H 1.08996 * 117.49992 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 6 5.5998 -1.2267 -2.6272 8 7 6.0882 -1.9173 -3.8232 9 6 7.4303 -1.9546 -4.0924 10 1 8.1287 -1.4745 -3.4231 11 6 7.8930 -2.6086 -5.2260 12 7 7.0417 -3.1933 -6.0419 13 14 9.7238 -2.6588 -5.5934 14 1 10.4623 -1.9316 -4.5299 15 1 10.1813 -4.0709 -5.6374 16 1 9.9833 -2.0133 -6.9054 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8573 1.1616 2.4118 20 6 2.6388 -0.7130 3.5607 21 6 2.8241 -0.1642 4.7922 22 8 3.2788 -1.1419 5.5921 23 6 3.3788 -2.2647 4.8666 24 6 3.8559 -3.5976 5.3831 25 6 5.3719 -3.7008 5.2046 26 6 5.9001 -4.7833 4.2613 27 6 6.0678 -4.9383 5.7748 28 7 2.9987 -2.0223 3.6479 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9995 -1.0728 -0.4258 36 1 3.7865 -2.3844 -2.5199 37 1 3.6403 -0.8743 -3.4507 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6868 -1.7396 40 1 5.4608 -2.3483 -4.4246 41 1 7.3651 -3.6500 -6.8343 42 1 2.2490 -1.6318 1.1527 43 1 2.6382 0.8619 5.0732 44 1 3.6076 -3.6874 6.4406 45 1 3.3692 -4.3983 4.8263 46 1 5.9149 -2.7564 5.2411 47 1 5.1675 -5.4223 3.7680 48 1 6.7909 -4.5513 3.6774 49 1 7.0687 -4.8081 6.1862 50 1 5.4456 -5.6787 6.2776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175928924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:47 Heat of formation + Delta-G solvation = -4.839786 kcal Electronic energy + Delta-G solvation = -27936.853269 eV Core-core repulsion = 23966.022760 eV Total energy + Delta-G solvation = -3970.830508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.78873 -39.89514 -38.00564 -36.97931 -35.25575 -35.19089 -33.19967 -32.27661 -31.38401 -30.22064 -28.32541 -27.41658 -24.91709 -24.01629 -22.74160 -22.44987 -22.05833 -21.30130 -20.74158 -20.59868 -20.56001 -18.48346 -17.16306 -16.98579 -16.93548 -16.41885 -16.14399 -15.13860 -15.00762 -14.84042 -14.69472 -14.58910 -14.01909 -13.95366 -13.83213 -13.50234 -13.30535 -13.11772 -12.91897 -12.89455 -12.33930 -12.22241 -11.87038 -11.73678 -11.59600 -11.41742 -11.23942 -11.16840 -10.97022 -10.81142 -10.79961 -10.66905 -10.47119 -10.38874 -10.33966 -10.24034 -9.93684 -9.64218 -9.42186 -9.16392 -8.83193 -6.86804 -5.72671 -3.00713 0.77570 1.65759 2.17393 2.87969 3.07575 3.35974 3.45600 3.47001 3.50975 3.53527 4.25526 4.36565 4.39816 4.52284 4.57646 4.59800 4.68358 4.79723 4.92561 5.00180 5.02953 5.11771 5.22001 5.29165 5.29521 5.32009 5.43630 5.48152 5.57856 5.58597 5.63668 5.69156 5.73540 5.74487 5.78801 5.82413 5.92997 5.99020 6.14358 6.25425 6.35714 6.40399 6.43102 6.51787 6.94573 6.98471 7.06287 7.38988 7.74337 7.96617 8.46918 9.57604 10.17296 10.52014 11.50633 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.002496 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.588448 B =11217.356417 C =14139.135623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 N -0.702 5.702 18 C 0.604 3.396 19 O -0.540 6.540 20 C -0.072 4.072 21 C 0.011 3.989 22 O -0.196 6.196 23 C 0.204 3.796 24 C 0.008 3.992 25 C -0.159 4.159 26 C -0.170 4.170 27 C -0.174 4.174 28 N -0.453 5.453 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.410 0.590 43 H 0.230 0.770 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.102 0.694 27.087 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.353 5.353 18 C 0.389 3.611 19 O -0.418 6.418 20 C -0.192 4.192 21 C -0.063 4.063 22 O -0.082 6.082 23 C -0.005 4.005 24 C -0.030 4.030 25 C -0.178 4.178 26 C -0.207 4.207 27 C -0.211 4.211 28 N -0.183 5.183 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.246 0.754 43 H 0.247 0.753 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.146 1.119 26.638 29.727 hybrid contribution 0.969 -0.037 -0.027 0.970 sum -12.177 1.082 26.612 29.285 Atomic orbital electron populations 1.22179 0.95188 1.02216 1.02535 1.21128 0.93886 0.97746 0.83661 0.89135 1.21938 0.96933 1.01038 0.96536 1.21529 0.93949 1.01067 0.98756 1.21721 0.97216 1.00306 0.97036 1.20644 0.91055 0.95275 0.90522 1.42397 1.05325 1.64974 1.25195 1.19304 0.83942 1.28185 1.05358 0.91210 1.24747 0.97711 1.01056 0.97733 1.69677 1.32647 1.40974 1.15102 0.86111 0.85125 0.77208 0.77758 1.20569 1.21867 1.21874 1.45915 1.65737 1.14683 1.08963 1.16723 0.77231 0.85462 0.81704 1.90821 1.51318 1.14834 1.84792 1.21834 1.09977 0.91099 0.96253 1.25291 0.97975 0.94207 0.88825 1.84399 1.63981 1.18615 1.41158 1.26160 0.99545 0.89511 0.85307 1.19729 0.94238 0.86616 1.02423 1.22136 0.93318 0.95320 1.07041 1.23130 1.03720 1.01191 0.92641 1.23027 1.01979 0.99111 0.96935 1.70782 1.14828 1.14129 1.18587 0.92271 0.91329 0.92390 0.91228 0.90047 0.92013 0.92058 0.92102 0.92055 0.96609 0.96629 0.78352 0.93618 0.75425 0.75336 0.88233 0.87167 0.87469 0.88115 0.88288 0.88423 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.14 1.47 2.57 -67.93 -0.17 1.30 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C -0.13 -1.33 4.75 -26.73 -0.13 -1.46 16 5 C -0.11 -1.52 5.10 -26.72 -0.14 -1.65 16 6 C -0.12 -2.07 5.33 -26.72 -0.14 -2.21 16 7 C 0.15 3.24 6.26 -4.04 -0.03 3.22 16 8 N -0.74 -19.56 5.60 -59.91 -0.34 -19.90 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 12 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 13 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 N -0.70 -7.77 4.53 -54.88 -0.25 -8.02 16 18 C 0.60 7.55 7.78 -12.52 -0.10 7.45 16 19 O -0.54 -7.95 16.55 5.27 0.09 -7.86 16 20 C -0.07 -0.81 6.99 -83.02 -0.58 -1.39 16 21 C 0.01 0.10 11.95 29.96 0.36 0.46 16 22 O -0.20 -1.74 10.73 6.51 0.07 -1.67 16 23 C 0.20 1.83 7.51 -13.08 -0.10 1.73 16 24 C 0.01 0.05 6.12 -27.89 -0.17 -0.13 16 25 C -0.16 -1.04 5.72 -90.63 -0.52 -1.56 16 26 C -0.17 -1.18 10.18 -26.70 -0.27 -1.45 16 27 C -0.17 -0.93 10.25 -26.70 -0.27 -1.21 16 28 N -0.45 -4.96 11.06 -7.65 -0.08 -5.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.83 7.75 -51.93 -0.40 0.42 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.41 4.28 8.33 -40.82 -0.34 3.94 16 43 H 0.23 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.11 0.56 7.88 -51.93 -0.41 0.15 16 46 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 47 H 0.10 0.66 8.03 -51.93 -0.42 0.25 16 48 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 421.39 15.07 6.35 6.35 Total: -1.00 -34.68 421.39 -9.20 -43.87 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.58 Total: 8.34 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.15 Total: -5.70 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.06 Total: -61.23 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.16 Total: -9.53 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.68 -9.20 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175928924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.034 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds