Wall clock time and date at job start Tue Mar 31 2020 18:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46774 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.46855 * 179.97438 * 7 6 5 9 9 C 1.36934 * 120.00299 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00555 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99515 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99993 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47454 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46994 * 119.99898 * 13 11 9 16 16 H 1.48498 * 109.47188 * 239.99605 * 13 11 9 17 17 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 18 18 C 1.34778 * 119.99771 * 274.99826 * 17 2 1 19 19 O 1.21612 * 120.00049 * 0.02562 * 18 17 2 20 20 C 1.47419 * 120.00043 * 180.02562 * 18 17 2 21 21 C 1.36095 * 126.45201 * 179.68570 * 20 18 17 22 22 O 1.34257 * 106.94932 * 179.89828 * 21 20 18 23 23 C 1.34052 * 108.22983 * 0.37184 * 22 21 20 24 24 C 1.50694 * 125.37741 * 179.80069 * 23 22 21 25 25 C 1.52999 * 109.47404 * 269.95580 * 24 23 22 26 26 C 1.52993 * 117.50096 * 243.75413 * 25 24 23 27 27 C 1.52990 * 117.50302 * 175.08995 * 25 24 23 28 28 N 1.29939 * 109.23797 * 359.76442 * 23 22 21 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 33 33 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 34 34 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 35 35 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 36 36 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 37 37 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 38 38 H 1.09001 * 109.46908 * 300.00434 * 7 6 5 39 39 H 1.08996 * 109.46687 * 59.99974 * 7 6 5 40 40 H 0.96999 * 120.00405 * 0.02562 * 8 7 6 41 41 H 0.97006 * 119.99411 * 179.97438 * 12 11 9 42 42 H 0.96998 * 120.00630 * 95.00428 * 17 2 1 43 43 H 1.07998 * 126.52195 * 0.04511 * 21 20 18 44 44 H 1.08999 * 109.47028 * 29.95870 * 24 23 22 45 45 H 1.08999 * 109.47109 * 149.95948 * 24 23 22 46 46 H 1.09000 * 115.54577 * 29.41677 * 25 24 23 47 47 H 1.09002 * 117.50045 * 359.97438 * 26 25 24 48 48 H 1.09008 * 117.50350 * 145.01943 * 26 25 24 49 49 H 1.09001 * 117.49900 * 214.98126 * 27 25 24 50 50 H 1.08996 * 117.49992 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 6 5.5998 -1.2267 -2.6272 8 7 6.0882 -1.9173 -3.8232 9 6 7.4303 -1.9546 -4.0924 10 1 8.1287 -1.4745 -3.4231 11 6 7.8930 -2.6086 -5.2260 12 7 7.0417 -3.1933 -6.0419 13 14 9.7238 -2.6588 -5.5934 14 1 10.4623 -1.9316 -4.5299 15 1 10.1813 -4.0709 -5.6374 16 1 9.9833 -2.0133 -6.9054 17 7 2.0183 -0.6906 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8573 1.1616 2.4118 20 6 2.6388 -0.7130 3.5607 21 6 2.8241 -0.1642 4.7922 22 8 3.2788 -1.1419 5.5921 23 6 3.3788 -2.2647 4.8666 24 6 3.8559 -3.5976 5.3831 25 6 5.3719 -3.7008 5.2046 26 6 5.9001 -4.7833 4.2613 27 6 6.0678 -4.9383 5.7748 28 7 2.9987 -2.0223 3.6479 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9995 -1.0728 -0.4258 36 1 3.7865 -2.3844 -2.5199 37 1 3.6403 -0.8743 -3.4507 38 1 5.8885 -0.1765 -2.6701 39 1 6.0340 -1.6868 -1.7396 40 1 5.4608 -2.3483 -4.4246 41 1 7.3651 -3.6500 -6.8343 42 1 2.2490 -1.6318 1.1527 43 1 2.6382 0.8619 5.0732 44 1 3.6076 -3.6874 6.4406 45 1 3.3692 -4.3983 4.8263 46 1 5.9149 -2.7564 5.2411 47 1 5.1675 -5.4223 3.7680 48 1 6.7909 -4.5513 3.6774 49 1 7.0687 -4.8081 6.1862 50 1 5.4456 -5.6787 6.2776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175928924.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:46 Heat of formation + Delta-G solvation = -28.434606 kcal Electronic energy + Delta-G solvation = -27937.876417 eV Core-core repulsion = 23966.022760 eV Total energy + Delta-G solvation = -3971.853657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.50523 -40.82922 -38.49792 -38.09039 -36.86223 -35.97406 -34.78324 -33.11788 -32.71143 -31.57394 -28.96512 -28.83175 -26.09135 -25.45850 -23.68418 -23.23107 -23.00401 -22.15013 -22.01639 -21.55491 -21.27513 -19.29319 -19.12516 -17.88313 -17.70414 -17.29795 -16.72261 -16.70109 -16.30584 -15.99708 -15.62738 -15.35079 -15.28030 -15.16634 -14.86950 -14.60429 -14.46648 -14.21039 -14.08787 -13.76586 -13.29076 -13.05972 -12.91396 -12.87864 -12.78007 -12.49001 -12.36345 -12.32603 -12.26294 -12.12513 -11.94428 -11.90241 -11.83838 -11.55395 -11.43020 -11.33850 -11.26831 -10.96818 -10.91001 -10.26487 -9.98078 -9.03623 -7.98204 -5.27736 0.02875 0.89332 1.45451 1.46846 1.51978 1.57202 2.04926 2.19146 2.53925 2.76230 2.91205 3.35099 3.53738 3.66918 3.75202 3.79394 3.99140 4.00783 4.02618 4.10213 4.12078 4.26025 4.32366 4.38626 4.44519 4.56691 4.59062 4.62094 4.67879 4.73783 4.75281 4.84550 4.85687 4.90391 4.96280 4.96986 5.00540 5.08254 5.10670 5.23801 5.25661 5.29722 5.29915 5.39731 5.43900 5.50102 5.52291 6.24865 6.27057 6.55883 7.05527 7.30399 8.06251 8.30575 9.25729 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.002496 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.588448 B =11217.356417 C =14139.135623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.111 4.111 7 C 0.149 3.851 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.289 1.289 16 H -0.290 1.290 17 N -0.698 5.698 18 C 0.601 3.399 19 O -0.569 6.569 20 C -0.102 4.102 21 C 0.025 3.975 22 O -0.194 6.194 23 C 0.206 3.794 24 C 0.011 3.989 25 C -0.163 4.163 26 C -0.189 4.189 27 C -0.156 4.156 28 N -0.476 5.476 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.413 0.587 43 H 0.255 0.745 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 0.326 28.532 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.143 4.143 6 C -0.149 4.149 7 C 0.023 3.977 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.217 1.217 17 N -0.348 5.348 18 C 0.387 3.613 19 O -0.450 6.450 20 C -0.221 4.221 21 C -0.049 4.049 22 O -0.080 6.080 23 C -0.004 4.004 24 C -0.027 4.027 25 C -0.182 4.182 26 C -0.226 4.226 27 C -0.193 4.193 28 N -0.206 5.206 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.206 0.794 41 H 0.062 0.938 42 H 0.249 0.751 43 H 0.271 0.729 44 H 0.144 0.856 45 H 0.137 0.863 46 H 0.112 0.888 47 H 0.121 0.879 48 H 0.102 0.898 49 H 0.119 0.881 50 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.334 0.753 28.104 31.116 hybrid contribution 1.042 0.086 -0.422 1.128 sum -12.292 0.839 27.682 30.300 Atomic orbital electron populations 1.22116 0.93881 1.02830 1.02616 1.21113 0.94832 0.96870 0.83396 0.90605 1.21852 0.94657 1.01893 0.97010 1.21420 0.95923 1.00242 0.96741 1.21591 0.93758 1.00868 0.98704 1.20830 0.94244 0.94269 0.88372 1.42624 1.04576 1.65388 1.26537 1.19683 0.85270 1.27814 1.05453 0.90990 1.25620 1.02367 1.01108 0.97727 1.69826 1.34671 1.41947 1.15547 0.85035 0.79714 0.77160 0.77620 1.19190 1.21623 1.21725 1.45938 1.65233 1.14761 1.08863 1.16924 0.76828 0.85206 0.82322 1.90793 1.52860 1.15966 1.85343 1.21814 1.11954 0.91718 0.96636 1.25782 0.96062 0.94988 0.88092 1.84431 1.63838 1.18664 1.41038 1.26796 0.98423 0.90287 0.84871 1.19924 0.93524 0.85135 1.04068 1.22095 0.93789 0.95044 1.07260 1.23156 1.03523 1.02145 0.93799 1.23114 1.02289 0.98402 0.95453 1.70747 1.15937 1.14165 1.19754 0.93550 0.89879 0.91475 0.90151 0.88786 0.92302 0.92456 0.92045 0.91992 0.96827 0.96875 0.79364 0.93832 0.75059 0.72906 0.85580 0.86277 0.88785 0.87878 0.89762 0.88109 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.48 71.98 0.68 -2.01 16 2 C 0.14 2.86 2.57 44.99 0.12 2.98 16 3 H 0.08 1.79 7.58 -2.39 -0.02 1.77 16 4 C -0.12 -2.26 4.75 30.60 0.15 -2.11 16 5 C -0.11 -2.68 5.10 30.60 0.16 -2.52 16 6 C -0.11 -3.61 5.33 30.60 0.16 -3.44 16 7 C 0.15 6.35 6.26 86.38 0.54 6.89 16 8 N -0.75 -40.19 5.60 -343.47 -1.92 -42.12 16 9 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 10 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 11 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 12 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 13 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 17 N -0.70 -15.19 4.53 -445.80 -2.02 -17.21 16 18 C 0.60 15.06 7.78 86.66 0.67 15.73 16 19 O -0.57 -16.91 16.55 -4.07 -0.07 -16.97 16 20 C -0.10 -2.27 6.99 40.41 0.28 -1.99 16 21 C 0.02 0.43 11.95 67.32 0.80 1.23 16 22 O -0.19 -3.19 10.73 0.36 0.00 -3.19 16 23 C 0.21 3.47 7.51 88.39 0.66 4.13 16 24 C 0.01 0.11 6.12 29.85 0.18 0.29 16 25 C -0.16 -1.96 5.72 -10.80 -0.06 -2.02 16 26 C -0.19 -2.56 10.18 30.62 0.31 -2.24 16 27 C -0.16 -1.41 10.25 30.61 0.31 -1.10 16 28 N -0.48 -10.21 11.06 -293.03 -3.24 -13.45 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 41 H 0.25 15.16 8.31 -92.70 -0.77 14.38 16 42 H 0.41 8.45 8.33 -92.71 -0.77 7.67 16 43 H 0.26 2.75 8.06 -2.91 -0.02 2.72 16 44 H 0.13 0.58 8.14 -2.39 -0.02 0.57 16 45 H 0.12 0.99 7.88 -2.39 -0.02 0.97 16 46 H 0.09 1.38 8.07 -2.39 -0.02 1.36 16 47 H 0.10 1.31 8.03 -2.39 -0.02 1.29 16 48 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -74.53 421.39 0.80 -73.72 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.55 Total: 34.41 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.28 Total: -4.03 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -6.90 Total: -133.08 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.16 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.53 0.80 -73.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175928924.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.290 kcal (2) G-P(sol) polarization free energy of solvation -74.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds