Wall clock time and date at job start Tue Mar 31 2020 18:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 5 5 C 1.52996 * 109.46821 * 185.00141 * 4 2 1 6 6 C 1.53005 * 109.46821 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47214 * 179.97438 * 6 5 4 8 8 N 1.46492 * 109.47140 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99901 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99955 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00117 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99987 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47415 * 89.99676 * 13 11 9 15 15 H 1.48501 * 109.47115 * 209.99777 * 13 11 9 16 16 H 1.48499 * 109.47260 * 329.99895 * 13 11 9 17 17 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 18 18 C 1.34771 * 119.99635 * 85.00546 * 17 2 1 19 19 O 1.21612 * 120.00278 * 359.97438 * 18 17 2 20 20 C 1.47426 * 119.99822 * 179.97438 * 18 17 2 21 21 C 1.36096 * 126.44696 * 179.68610 * 20 18 17 22 22 O 1.34257 * 106.94412 * 179.90028 * 21 20 18 23 23 C 1.34042 * 108.23078 * 0.36684 * 22 21 20 24 24 C 1.50704 * 125.38069 * 179.80819 * 23 22 21 25 25 C 1.53006 * 109.46715 * 269.95254 * 24 23 22 26 26 C 1.52994 * 117.50188 * 243.74316 * 25 24 23 27 27 C 1.52998 * 117.49489 * 175.08495 * 25 24 23 28 28 N 1.29938 * 109.24416 * 359.76730 * 23 22 21 29 29 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 32 32 H 1.09001 * 109.46455 * 304.99943 * 4 2 1 33 33 H 1.08998 * 109.47316 * 64.99505 * 4 2 1 34 34 H 1.09001 * 109.47445 * 299.99196 * 5 4 2 35 35 H 1.08998 * 109.47695 * 59.99596 * 5 4 2 36 36 H 1.09000 * 109.46735 * 299.99332 * 6 5 4 37 37 H 1.08998 * 109.47316 * 59.99364 * 6 5 4 38 38 H 1.09001 * 109.46827 * 299.99946 * 7 6 5 39 39 H 1.09006 * 109.46604 * 59.99545 * 7 6 5 40 40 H 0.97000 * 120.00426 * 0.02562 * 8 7 6 41 41 H 0.96998 * 120.00576 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99818 * 265.00273 * 17 2 1 43 43 H 1.07996 * 126.52491 * 0.03302 * 21 20 18 44 44 H 1.08995 * 109.47316 * 29.95040 * 24 23 22 45 45 H 1.08997 * 109.47447 * 149.95590 * 24 23 22 46 46 H 1.09000 * 115.54837 * 29.41992 * 25 24 23 47 47 H 1.09003 * 117.49656 * 0.02562 * 26 25 24 48 48 H 1.08995 * 117.50323 * 145.02006 * 26 25 24 49 49 H 1.09005 * 117.49739 * 214.98283 * 27 25 24 50 50 H 1.08996 * 117.50408 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0747 -1.3341 2.5633 7 6 5.5996 -1.2267 2.6275 8 7 6.0878 -1.9163 3.8242 9 6 7.4299 -1.9534 4.0935 10 1 8.1285 -1.4739 3.4238 11 6 7.8925 -2.6064 5.2278 12 7 9.1824 -2.6416 5.4869 13 14 6.6842 -3.4352 6.3864 14 1 6.4782 -4.8434 5.9625 15 1 7.2261 -3.4085 7.7687 16 1 5.3874 -2.7124 6.3491 17 7 2.0184 -0.6907 -1.1962 18 6 2.1471 -0.0183 -2.3571 19 8 1.8576 1.1616 -2.4118 20 6 2.6391 -0.7131 -3.5607 21 6 2.8131 -0.1671 -4.7951 22 8 3.2767 -1.1426 -5.5926 23 6 3.3776 -2.2651 -4.8669 24 6 3.8556 -3.5978 -5.3831 25 6 2.6626 -4.3987 -5.9089 26 6 2.3183 -5.7059 -5.1925 27 6 2.9548 -5.7401 -6.5842 28 7 2.9989 -2.0224 -3.6479 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6053 -0.2618 2.1369 33 1 1.7516 -1.7716 1.2056 34 1 3.9995 -1.0729 0.4260 35 1 3.8532 0.4369 1.3573 36 1 3.6401 -0.8742 3.4508 37 1 3.7863 -2.3844 2.5201 38 1 6.0339 -1.6869 1.7399 39 1 5.8883 -0.1765 2.6704 40 1 5.4604 -2.3473 4.4255 41 1 9.5057 -3.0982 6.2793 42 1 2.2490 -1.6318 -1.1526 43 1 2.6178 0.8565 -5.0785 44 1 4.5710 -3.4395 -6.1901 45 1 4.3357 -4.1495 -4.5749 46 1 1.8357 -3.8071 -6.3017 47 1 2.9415 -5.9953 -4.3463 48 1 1.2649 -5.9746 -5.1141 49 1 2.3198 -6.0313 -7.4209 50 1 3.9968 -6.0524 -6.6534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175928925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:50 Heat of formation + Delta-G solvation = -0.578580 kcal Electronic energy + Delta-G solvation = -27840.586774 eV Core-core repulsion = 23869.941045 eV Total energy + Delta-G solvation = -3970.645729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.80918 -39.93404 -38.09209 -37.05974 -35.41473 -35.23324 -33.25805 -32.30925 -31.48501 -30.52740 -28.35897 -27.74582 -24.96901 -23.99883 -22.85397 -22.45034 -21.87578 -21.30006 -20.88206 -20.69745 -20.61162 -18.52128 -17.47004 -17.18096 -16.98255 -16.47037 -16.22346 -15.20343 -15.06692 -14.86036 -14.76757 -14.56263 -14.13819 -14.03662 -13.92924 -13.54268 -13.33066 -13.32004 -13.00890 -12.70816 -12.42302 -12.29304 -11.98048 -11.89801 -11.69208 -11.56435 -11.43804 -11.21130 -11.13040 -10.91034 -10.85307 -10.81797 -10.55357 -10.42457 -10.35232 -10.29067 -10.07218 -9.55903 -9.45214 -9.20466 -8.85547 -7.18692 -5.73512 -3.08473 0.75658 1.63555 2.15366 2.84458 3.04557 3.26968 3.39564 3.42385 3.43537 3.46952 4.18415 4.31600 4.34826 4.45602 4.51191 4.55359 4.62167 4.74390 4.85735 4.94924 4.97869 5.07730 5.19683 5.19766 5.21945 5.29665 5.33378 5.37235 5.44189 5.51689 5.57490 5.59867 5.62897 5.65601 5.68603 5.71072 5.84314 5.89547 6.05137 6.10801 6.17299 6.22407 6.33792 6.40814 6.82035 6.85812 7.03688 7.35495 7.93158 8.03864 8.45910 9.25554 9.98075 10.18629 11.45145 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008981 B = 0.002238 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.965432 B =12507.833259 C =14294.714164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.243 4.243 10 H 0.089 0.911 11 C 0.001 3.999 12 N -0.936 5.936 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.703 5.703 18 C 0.604 3.396 19 O -0.539 6.539 20 C -0.072 4.072 21 C 0.012 3.988 22 O -0.195 6.195 23 C 0.205 3.795 24 C 0.006 3.994 25 C -0.157 4.157 26 C -0.172 4.172 27 C -0.173 4.173 28 N -0.454 5.454 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.410 0.590 43 H 0.231 0.769 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.957 -0.968 -26.522 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.373 4.373 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.584 5.584 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.354 5.354 18 C 0.389 3.611 19 O -0.417 6.417 20 C -0.192 4.192 21 C -0.062 4.062 22 O -0.081 6.081 23 C -0.005 4.005 24 C -0.032 4.032 25 C -0.176 4.176 26 C -0.209 4.209 27 C -0.210 4.210 28 N -0.184 5.184 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.246 0.754 43 H 0.247 0.753 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.919 -0.528 -26.071 32.814 hybrid contribution -0.642 -0.473 0.444 0.913 sum -20.561 -1.001 -25.627 32.871 Atomic orbital electron populations 1.22180 0.95186 1.02201 1.02564 1.21120 0.93891 0.97773 0.83628 0.89077 1.21939 0.96877 1.01026 0.96626 1.21519 0.93986 1.01216 0.98611 1.21772 0.97259 1.00309 0.97338 1.20629 0.90812 0.95677 0.89966 1.42739 1.05228 1.66376 1.26017 1.19093 0.82283 1.29204 1.06676 0.89297 1.24692 0.95649 1.00829 0.98267 1.69704 1.11719 1.48394 1.28606 0.86509 0.80951 0.79787 0.81074 1.21094 1.21736 1.20350 1.45908 1.65829 1.14669 1.08969 1.16722 0.77195 0.85455 0.81697 1.90823 1.51275 1.14826 1.84775 1.21823 1.10083 0.91157 0.96152 1.25296 0.97884 0.94271 0.88776 1.84399 1.63679 1.18701 1.41333 1.26143 0.99854 0.89234 0.85237 1.19749 0.96843 0.84518 1.02094 1.22134 0.99730 0.90264 1.05473 1.23114 1.02110 0.99765 0.95910 1.23038 1.02406 0.99081 0.96498 1.70778 1.14832 1.13941 1.18799 0.92228 0.92412 0.91345 0.90085 0.91258 0.91855 0.91790 0.92107 0.92152 0.95735 0.95762 0.80740 0.93105 0.75435 0.75324 0.88083 0.86988 0.87556 0.88042 0.88614 0.88454 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.48 37.16 0.35 -1.09 16 2 C 0.14 1.40 2.57 -67.92 -0.17 1.22 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 4 C -0.13 -1.24 4.75 -26.73 -0.13 -1.36 16 5 C -0.12 -1.42 5.10 -26.73 -0.14 -1.56 16 6 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 7 C 0.16 3.15 6.26 -4.04 -0.03 3.13 16 8 N -0.76 -18.85 5.41 -59.91 -0.32 -19.17 16 9 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 10 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 11 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 12 N -0.94 -30.07 13.97 55.49 0.78 -29.29 16 13 Si 0.89 22.58 27.73 -169.99 -4.71 17.87 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 16 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 17 N -0.70 -7.46 4.53 -54.87 -0.25 -7.71 16 18 C 0.60 7.36 7.78 -12.52 -0.10 7.26 16 19 O -0.54 -7.79 16.55 5.27 0.09 -7.70 16 20 C -0.07 -0.79 6.99 -83.02 -0.58 -1.37 16 21 C 0.01 0.10 11.95 29.96 0.36 0.46 16 22 O -0.20 -1.71 10.73 6.53 0.07 -1.64 16 23 C 0.20 1.80 7.51 -13.08 -0.10 1.70 16 24 C 0.01 0.03 6.12 -27.88 -0.17 -0.14 16 25 C -0.16 -0.85 5.72 -90.62 -0.52 -1.37 16 26 C -0.17 -0.92 10.18 -26.70 -0.27 -1.19 16 27 C -0.17 -0.75 10.25 -26.70 -0.27 -1.02 16 28 N -0.45 -4.85 11.06 -7.65 -0.08 -4.93 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.36 8.65 5.53 -40.82 -0.23 8.42 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.41 4.08 8.33 -40.82 -0.34 3.74 16 43 H 0.23 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.11 0.60 7.88 -51.93 -0.41 0.19 16 46 H 0.11 0.63 8.07 -51.93 -0.42 0.21 16 47 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 48 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 418.27 15.07 6.30 6.30 Total: -1.00 -35.45 418.27 -8.84 -44.29 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.54 Total: 6.79 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.16 Total: -4.80 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.12 Total: -61.11 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.16 Total: -9.34 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.45 -8.84 -44.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175928925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.710 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds