Wall clock time and date at job start Tue Mar 31 2020 18:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.53005 * 109.46982 * 120.00322 * 2 1 3 5 5 C 1.52996 * 109.46821 * 185.00141 * 4 2 1 6 6 C 1.53005 * 109.46821 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.47214 * 179.97438 * 6 5 4 8 8 N 1.46492 * 109.47140 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99901 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99955 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00117 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99987 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47415 * 89.99676 * 13 11 9 15 15 H 1.48501 * 109.47115 * 209.99777 * 13 11 9 16 16 H 1.48499 * 109.47260 * 329.99895 * 13 11 9 17 17 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 18 18 C 1.34771 * 119.99635 * 85.00546 * 17 2 1 19 19 O 1.21612 * 120.00278 * 359.97438 * 18 17 2 20 20 C 1.47426 * 119.99822 * 179.97438 * 18 17 2 21 21 C 1.36096 * 126.44696 * 179.68610 * 20 18 17 22 22 O 1.34257 * 106.94412 * 179.90028 * 21 20 18 23 23 C 1.34042 * 108.23078 * 0.36684 * 22 21 20 24 24 C 1.50704 * 125.38069 * 179.80819 * 23 22 21 25 25 C 1.53006 * 109.46715 * 269.95254 * 24 23 22 26 26 C 1.52994 * 117.50188 * 243.74316 * 25 24 23 27 27 C 1.52998 * 117.49489 * 175.08495 * 25 24 23 28 28 N 1.29938 * 109.24416 * 359.76730 * 23 22 21 29 29 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 30 30 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 32 32 H 1.09001 * 109.46455 * 304.99943 * 4 2 1 33 33 H 1.08998 * 109.47316 * 64.99505 * 4 2 1 34 34 H 1.09001 * 109.47445 * 299.99196 * 5 4 2 35 35 H 1.08998 * 109.47695 * 59.99596 * 5 4 2 36 36 H 1.09000 * 109.46735 * 299.99332 * 6 5 4 37 37 H 1.08998 * 109.47316 * 59.99364 * 6 5 4 38 38 H 1.09001 * 109.46827 * 299.99946 * 7 6 5 39 39 H 1.09006 * 109.46604 * 59.99545 * 7 6 5 40 40 H 0.97000 * 120.00426 * 0.02562 * 8 7 6 41 41 H 0.96998 * 120.00576 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99818 * 265.00273 * 17 2 1 43 43 H 1.07996 * 126.52491 * 0.03302 * 21 20 18 44 44 H 1.08995 * 109.47316 * 29.95040 * 24 23 22 45 45 H 1.08997 * 109.47447 * 149.95590 * 24 23 22 46 46 H 1.09000 * 115.54837 * 29.41992 * 25 24 23 47 47 H 1.09003 * 117.49656 * 0.02562 * 26 25 24 48 48 H 1.08995 * 117.50323 * 145.02006 * 26 25 24 49 49 H 1.09005 * 117.49739 * 214.98283 * 27 25 24 50 50 H 1.08996 * 117.50408 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0747 -1.3341 2.5633 7 6 5.5996 -1.2267 2.6275 8 7 6.0878 -1.9163 3.8242 9 6 7.4299 -1.9534 4.0935 10 1 8.1285 -1.4739 3.4238 11 6 7.8925 -2.6064 5.2278 12 7 9.1824 -2.6416 5.4869 13 14 6.6842 -3.4352 6.3864 14 1 6.4782 -4.8434 5.9625 15 1 7.2261 -3.4085 7.7687 16 1 5.3874 -2.7124 6.3491 17 7 2.0184 -0.6907 -1.1962 18 6 2.1471 -0.0183 -2.3571 19 8 1.8576 1.1616 -2.4118 20 6 2.6391 -0.7131 -3.5607 21 6 2.8131 -0.1671 -4.7951 22 8 3.2767 -1.1426 -5.5926 23 6 3.3776 -2.2651 -4.8669 24 6 3.8556 -3.5978 -5.3831 25 6 2.6626 -4.3987 -5.9089 26 6 2.3183 -5.7059 -5.1925 27 6 2.9548 -5.7401 -6.5842 28 7 2.9989 -2.0224 -3.6479 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6053 -0.2618 2.1369 33 1 1.7516 -1.7716 1.2056 34 1 3.9995 -1.0729 0.4260 35 1 3.8532 0.4369 1.3573 36 1 3.6401 -0.8742 3.4508 37 1 3.7863 -2.3844 2.5201 38 1 6.0339 -1.6869 1.7399 39 1 5.8883 -0.1765 2.6704 40 1 5.4604 -2.3473 4.4255 41 1 9.5057 -3.0982 6.2793 42 1 2.2490 -1.6318 -1.1526 43 1 2.6178 0.8565 -5.0785 44 1 4.5710 -3.4395 -6.1901 45 1 4.3357 -4.1495 -4.5749 46 1 1.8357 -3.8071 -6.3017 47 1 2.9415 -5.9953 -4.3463 48 1 1.2649 -5.9746 -5.1141 49 1 2.3198 -6.0313 -7.4209 50 1 3.9968 -6.0524 -6.6534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175928925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:49 Heat of formation + Delta-G solvation = -25.417660 kcal Electronic energy + Delta-G solvation = -27841.663877 eV Core-core repulsion = 23869.941045 eV Total energy + Delta-G solvation = -3971.722832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.51358 -40.83304 -38.49476 -38.13301 -36.97555 -35.98122 -34.78812 -33.28232 -32.84008 -31.74425 -29.09797 -28.94074 -26.02229 -25.35823 -23.51212 -23.22855 -22.99939 -22.24992 -22.02760 -21.56209 -21.27951 -19.64552 -19.26689 -17.88014 -17.71806 -17.30435 -16.71824 -16.64766 -16.32790 -15.97631 -15.88075 -15.50800 -15.18508 -14.90761 -14.87656 -14.63657 -14.50800 -14.30479 -14.18466 -13.78186 -13.58892 -13.11891 -12.98415 -12.93724 -12.78336 -12.48304 -12.36414 -12.32996 -12.27714 -12.07532 -11.94157 -11.89942 -11.80647 -11.56206 -11.47039 -11.34187 -11.26766 -10.98726 -10.90876 -10.26991 -9.98400 -9.32921 -8.05125 -5.39650 0.02323 0.88859 1.37018 1.41832 1.49455 1.51146 2.04935 2.18388 2.47494 2.75483 2.91242 3.25646 3.45491 3.63358 3.74263 3.79449 3.89087 3.99069 4.01390 4.05793 4.09714 4.25728 4.31040 4.35988 4.43879 4.54807 4.57457 4.61279 4.67808 4.73026 4.73790 4.84801 4.85835 4.88691 4.95517 4.97090 5.00146 5.07920 5.10220 5.22336 5.26152 5.29609 5.30171 5.38689 5.47410 5.52254 5.72301 6.19104 6.26458 6.55358 7.05414 7.05500 7.81290 8.02415 9.16568 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008981 B = 0.002238 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.965432 B =12507.833259 C =14294.714164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.150 3.850 8 N -0.760 5.760 9 C -0.243 4.243 10 H 0.051 0.949 11 C -0.068 4.068 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.249 1.249 17 N -0.698 5.698 18 C 0.601 3.399 19 O -0.570 6.570 20 C -0.102 4.102 21 C 0.024 3.976 22 O -0.194 6.194 23 C 0.206 3.794 24 C 0.007 3.993 25 C -0.162 4.162 26 C -0.183 4.183 27 C -0.161 4.161 28 N -0.475 5.475 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.368 0.632 41 H 0.259 0.741 42 H 0.413 0.587 43 H 0.255 0.745 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.279 -2.043 -26.763 34.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.146 4.146 6 C -0.153 4.153 7 C 0.024 3.976 8 N -0.406 5.406 9 C -0.374 4.374 10 H 0.069 0.931 11 C -0.259 4.259 12 N -0.635 5.635 13 Si 0.789 3.211 14 H -0.200 1.200 15 H -0.220 1.220 16 H -0.174 1.174 17 N -0.348 5.348 18 C 0.387 3.613 19 O -0.450 6.450 20 C -0.221 4.221 21 C -0.050 4.050 22 O -0.080 6.080 23 C -0.004 4.004 24 C -0.030 4.030 25 C -0.181 4.181 26 C -0.220 4.220 27 C -0.197 4.197 28 N -0.205 5.205 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.201 0.799 41 H 0.068 0.932 42 H 0.250 0.750 43 H 0.271 0.729 44 H 0.139 0.861 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.282 -1.605 -26.332 34.532 hybrid contribution 0.169 -0.101 0.407 0.452 sum -22.113 -1.707 -25.925 34.118 Atomic orbital electron populations 1.22119 0.93947 1.02820 1.02575 1.21134 0.94789 0.96914 0.83506 0.90706 1.21855 0.94582 1.01995 0.96922 1.21432 0.95952 1.00336 0.96917 1.21654 0.93156 1.01464 0.99017 1.20832 0.94449 0.94427 0.87871 1.42740 1.03508 1.66821 1.27525 1.19060 0.83986 1.28318 1.05996 0.93135 1.25633 0.97798 1.02047 1.00437 1.69900 1.14297 1.49828 1.29489 0.85294 0.79189 0.78892 0.77715 1.20043 1.22011 1.17355 1.45933 1.65235 1.14764 1.08849 1.16918 0.76827 0.85195 0.82351 1.90795 1.52865 1.15996 1.85337 1.21825 1.11955 0.91754 0.96555 1.25785 0.96111 0.95030 0.88095 1.84429 1.63571 1.18765 1.41248 1.26770 0.98769 0.89982 0.84833 1.19933 0.97282 0.82999 1.02811 1.22077 0.99527 0.90441 1.06037 1.23164 1.02202 0.99995 0.96647 1.23119 1.03053 0.97602 0.95968 1.70742 1.15898 1.13947 1.19921 0.93754 0.91439 0.89805 0.88570 0.89902 0.92465 0.92391 0.91261 0.91161 0.96463 0.96586 0.79879 0.93198 0.75012 0.72940 0.86050 0.86663 0.88263 0.88204 0.88773 0.87746 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 2 C 0.14 2.63 2.57 44.99 0.12 2.74 16 3 H 0.07 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.12 -1.95 4.75 30.59 0.15 -1.81 16 5 C -0.11 -2.48 5.10 30.59 0.16 -2.32 16 6 C -0.12 -3.24 5.33 30.60 0.16 -3.08 16 7 C 0.15 5.97 6.26 86.38 0.54 6.51 16 8 N -0.76 -37.06 5.41 -343.45 -1.86 -38.92 16 9 C -0.24 -14.49 10.47 84.03 0.88 -13.61 16 10 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 11 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 12 N -0.98 -64.58 13.97 21.65 0.30 -64.27 16 13 Si 0.96 45.98 27.73 68.60 1.90 47.88 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 17 N -0.70 -14.41 4.53 -445.78 -2.02 -16.43 16 18 C 0.60 14.69 7.78 86.66 0.67 15.36 16 19 O -0.57 -16.66 16.55 -4.07 -0.07 -16.72 16 20 C -0.10 -2.23 6.99 40.41 0.28 -1.94 16 21 C 0.02 0.41 11.95 67.32 0.80 1.21 16 22 O -0.19 -3.21 10.73 0.46 0.00 -3.20 16 23 C 0.21 3.46 7.51 88.39 0.66 4.12 16 24 C 0.01 0.07 6.12 29.85 0.18 0.26 16 25 C -0.16 -1.57 5.72 -10.79 -0.06 -1.63 16 26 C -0.18 -1.78 10.18 30.61 0.31 -1.47 16 27 C -0.16 -1.12 10.25 30.62 0.31 -0.81 16 28 N -0.48 -10.01 11.06 -293.03 -3.24 -13.25 16 29 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.37 16.70 5.53 -92.71 -0.51 16.18 16 41 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 42 H 0.41 7.90 8.33 -92.71 -0.77 7.13 16 43 H 0.25 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.12 1.10 7.88 -2.39 -0.02 1.08 16 46 H 0.10 1.11 8.07 -2.39 -0.02 1.09 16 47 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16 48 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -77.80 418.27 0.94 -76.86 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.41 Total: 29.99 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.32 Total: -1.93 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.81 Total: -132.87 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.93 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -77.80 0.94 -76.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175928925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.442 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds