Wall clock time and date at job start Tue Mar 31 2020 18:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.53002 * 109.47016 * 239.99680 * 2 1 3 5 5 C 1.53003 * 109.47090 * 174.99820 * 4 2 1 6 6 C 1.53002 * 109.47090 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47044 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47197 * 180.02562 * 7 6 5 9 9 C 1.36935 * 120.00235 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00237 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99859 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46792 * 90.00860 * 13 11 9 15 15 H 1.48496 * 109.47479 * 210.00394 * 13 11 9 16 16 H 1.48500 * 109.47177 * 330.01207 * 13 11 9 17 17 N 1.46501 * 109.47161 * 119.99952 * 2 1 3 18 18 C 1.34768 * 119.99983 * 274.99736 * 17 2 1 19 19 O 1.21281 * 120.00280 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00036 * 179.97438 * 18 17 2 21 21 H 1.09001 * 109.47046 * 60.00508 * 20 18 17 22 22 C 1.52998 * 109.47574 * 300.00417 * 20 18 17 23 23 O 1.42900 * 109.47426 * 180.02562 * 20 18 17 24 24 C 1.35676 * 117.00228 * 210.00709 * 23 20 18 25 25 C 1.38922 * 119.68298 * 180.02562 * 24 23 20 26 26 C 1.38380 * 119.11001 * 179.97438 * 25 24 23 27 27 C 1.38829 * 118.48477 * 0.02562 * 26 25 24 28 28 C 1.38043 * 119.28775 * 0.25231 * 27 26 25 29 29 N 1.31968 * 120.83596 * 359.45492 * 28 27 26 30 30 H 1.09003 * 109.46696 * 300.00207 * 1 2 3 31 31 H 1.08999 * 109.47216 * 59.99928 * 1 2 3 32 32 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47106 * 295.00050 * 4 2 1 34 34 H 1.09004 * 109.46749 * 55.00421 * 4 2 1 35 35 H 1.08997 * 109.47333 * 300.00090 * 5 4 2 36 36 H 1.09004 * 109.46834 * 60.00653 * 5 4 2 37 37 H 1.08997 * 109.47232 * 300.00770 * 6 5 4 38 38 H 1.09004 * 109.46749 * 60.00601 * 6 5 4 39 39 H 1.09004 * 109.46867 * 300.00248 * 7 6 5 40 40 H 1.09000 * 109.47410 * 59.99855 * 7 6 5 41 41 H 0.97007 * 119.99977 * 359.97438 * 8 7 6 42 42 H 0.97001 * 120.00222 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00016 * 94.99510 * 17 2 1 44 44 H 1.09001 * 109.47008 * 300.00114 * 22 20 18 45 45 H 1.09000 * 109.46873 * 59.99492 * 22 20 18 46 46 H 1.08999 * 109.47334 * 179.97438 * 22 20 18 47 47 H 1.08002 * 120.44550 * 359.97438 * 25 24 23 48 48 H 1.08002 * 120.75560 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35145 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.57882 * 179.72181 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3341 -2.5633 7 6 5.5996 -1.2267 -2.6274 8 7 6.0878 -1.9163 -3.8242 9 6 7.4299 -1.9524 -4.0940 10 1 8.1284 -1.4729 -3.4243 11 6 7.8925 -2.6064 -5.2277 12 7 7.0412 -3.1912 -6.0436 13 14 9.7232 -2.6551 -5.5962 14 1 10.3240 -3.8558 -4.9617 15 1 9.9310 -2.7153 -7.0653 16 1 10.3699 -1.4330 -5.0544 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0183 2.3571 19 8 1.8583 1.1584 2.4117 20 6 2.6489 -0.7288 3.5877 21 1 3.6481 -1.1213 3.3986 22 6 1.7045 -1.8824 3.9314 23 8 2.6966 0.1893 4.6817 24 6 3.6424 -0.0303 5.6294 25 6 3.7381 0.8279 6.7176 26 6 4.7068 0.5925 7.6774 27 6 5.5500 -0.4981 7.5136 28 6 5.4015 -1.3058 6.4040 29 7 4.4644 -1.0591 5.5082 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9995 -1.0729 -0.4260 37 1 3.7863 -2.3843 -2.5201 38 1 3.6401 -0.8741 -3.4508 39 1 5.8883 -0.1765 -2.6704 40 1 6.0340 -1.6868 -1.7399 41 1 5.4604 -2.3473 -4.4255 42 1 7.3644 -3.6478 -6.8360 43 1 2.2490 -1.6318 1.1527 44 1 0.7053 -1.4898 4.1206 45 1 1.6677 -2.5827 3.0971 46 1 2.0677 -2.3965 4.8213 47 1 3.0655 1.6674 6.8133 48 1 4.8046 1.2424 8.5344 49 1 6.3168 -0.7097 8.2441 50 1 6.0579 -2.1529 6.2695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176183442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:39 Heat of formation + Delta-G solvation = -44.435915 kcal Electronic energy + Delta-G solvation = -27995.903156 eV Core-core repulsion = 24023.355631 eV Total energy + Delta-G solvation = -3972.547525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15338 -40.09509 -38.24204 -36.84810 -35.25101 -33.50986 -32.90022 -32.66013 -31.21791 -30.42962 -29.94923 -27.44628 -25.38595 -24.30682 -23.96590 -23.33529 -22.14568 -21.03878 -20.70372 -20.57259 -18.90460 -17.87392 -16.99162 -16.89420 -16.35527 -16.30046 -16.02721 -15.21963 -15.09730 -14.88828 -14.71385 -14.34895 -13.99470 -13.79621 -13.67592 -13.52646 -13.36569 -13.15532 -12.95024 -12.89303 -12.72557 -12.39352 -12.36129 -12.15076 -11.76663 -11.54267 -11.42598 -11.25849 -10.99833 -10.79868 -10.70547 -10.41632 -10.34517 -10.29881 -10.03197 -9.97830 -9.89714 -9.65587 -9.27661 -8.88731 -8.84416 -6.88852 -5.74131 -3.02412 0.77038 0.87577 2.21579 2.37311 3.21033 3.40410 3.44991 3.49845 3.51930 3.87868 4.29937 4.46983 4.52663 4.53611 4.64062 4.66064 4.69902 4.80305 4.83159 4.89097 4.97569 5.18731 5.25565 5.30492 5.32531 5.39853 5.44883 5.55743 5.56357 5.61181 5.66581 5.69318 5.78386 5.80271 5.88989 5.95631 6.01914 6.10316 6.21089 6.31415 6.36293 6.39735 6.47803 6.83199 6.91164 6.95033 7.23460 7.45589 7.72320 7.96491 8.45323 9.55980 10.15334 10.49952 11.48979 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.002101 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.137823 B =13322.981394 C =15641.394480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.716 5.716 18 C 0.518 3.482 19 O -0.523 6.523 20 C 0.071 3.929 21 H 0.117 0.883 22 C -0.163 4.163 23 O -0.277 6.277 24 C 0.323 3.677 25 C -0.189 4.189 26 C -0.040 4.040 27 C -0.214 4.214 28 C 0.142 3.858 29 N -0.542 5.542 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.402 0.598 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.095 4.051 28.091 31.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.370 5.370 18 C 0.302 3.698 19 O -0.397 6.397 20 C 0.011 3.989 21 H 0.135 0.865 22 C -0.221 4.221 23 O -0.182 6.182 24 C 0.144 3.856 25 C -0.210 4.210 26 C -0.066 4.066 27 C -0.234 4.234 28 C -0.014 4.014 29 N -0.265 5.265 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.237 0.763 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.160 0.840 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.436 4.627 27.372 30.841 hybrid contribution 1.170 -0.347 0.148 1.229 sum -12.267 4.280 27.520 30.432 Atomic orbital electron populations 1.22179 0.95233 1.02158 1.02576 1.21085 0.93830 0.97767 0.83510 0.89241 1.21946 0.96895 1.00981 0.96631 1.21531 0.93944 1.01155 0.98675 1.21724 0.97247 1.00268 0.97080 1.20650 0.91023 0.95340 0.90542 1.42390 1.05333 1.65037 1.25130 1.19255 0.83928 1.28347 1.05383 0.91248 1.24755 0.97744 1.01025 0.97722 1.69663 1.32743 1.40875 1.15100 0.86174 0.85108 0.77667 0.77178 1.21730 1.21756 1.20775 1.45987 1.67554 1.14199 1.09260 1.20177 0.78123 0.87332 0.84149 1.90735 1.48696 1.15609 1.84704 1.22102 1.02854 0.89332 0.84627 0.86547 1.22163 0.99671 0.96644 1.03580 1.86375 1.49492 1.51130 1.31243 1.19890 0.87293 0.90148 0.88228 1.21097 1.03065 1.02292 0.94495 1.21438 0.92083 0.95768 0.97297 1.22009 1.02755 0.97838 1.00825 1.22462 0.92646 0.97689 0.88593 1.67261 1.07629 1.19817 1.31840 0.92257 0.91392 0.92390 0.91234 0.90058 0.91965 0.92142 0.92106 0.92031 0.96584 0.96625 0.78347 0.93558 0.76329 0.91278 0.90245 0.90741 0.83973 0.84090 0.84458 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.07 16 2 C 0.14 1.39 2.57 -67.93 -0.17 1.21 16 3 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 4 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16 5 C -0.11 -1.42 5.10 -26.73 -0.14 -1.55 16 6 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 7 C 0.15 3.16 6.26 -4.05 -0.03 3.13 16 8 N -0.73 -19.31 5.60 -59.91 -0.34 -19.64 16 9 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 13 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 N -0.72 -6.66 4.42 -53.81 -0.24 -6.89 16 18 C 0.52 6.10 7.20 -10.99 -0.08 6.02 16 19 O -0.52 -8.27 16.16 -14.35 -0.23 -8.51 16 20 C 0.07 0.72 2.91 -27.88 -0.08 0.64 16 21 H 0.12 1.16 6.98 -51.93 -0.36 0.80 16 22 C -0.16 -1.22 9.43 37.16 0.35 -0.87 16 23 O -0.28 -3.34 9.29 -38.64 -0.36 -3.70 16 24 C 0.32 3.47 7.45 -17.12 -0.13 3.34 16 25 C -0.19 -1.63 10.04 -39.28 -0.39 -2.02 16 26 C -0.04 -0.26 10.17 -39.31 -0.40 -0.66 16 27 C -0.21 -1.30 10.11 -39.43 -0.40 -1.70 16 28 C 0.14 1.06 11.18 -17.56 -0.20 0.87 16 29 N -0.54 -5.43 8.65 -13.33 -0.12 -5.55 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.47 7.67 -40.82 -0.31 10.15 16 42 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.40 2.83 8.02 -40.82 -0.33 2.50 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.43 7.56 -51.93 -0.39 0.04 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 48 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 49 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 50 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 417.17 15.07 6.29 6.29 Total: -1.00 -35.90 417.17 -9.62 -45.53 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.50 Total: 6.53 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.83 Total: -3.76 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.04 Total: -60.15 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.59 Total: -12.21 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.90 -9.62 -45.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176183442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.090 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds