Wall clock time and date at job start Tue Mar 31 2020 18:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47365 * 2 1 4 4 C 1.53002 * 109.47016 * 239.99680 * 2 1 3 5 5 C 1.53003 * 109.47090 * 174.99820 * 4 2 1 6 6 C 1.53002 * 109.47090 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47044 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47197 * 180.02562 * 7 6 5 9 9 C 1.36935 * 120.00235 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00237 * 179.97438 * 9 8 7 12 12 N 1.31620 * 119.99859 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00191 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46792 * 90.00860 * 13 11 9 15 15 H 1.48496 * 109.47479 * 210.00394 * 13 11 9 16 16 H 1.48500 * 109.47177 * 330.01207 * 13 11 9 17 17 N 1.46501 * 109.47161 * 119.99952 * 2 1 3 18 18 C 1.34768 * 119.99983 * 274.99736 * 17 2 1 19 19 O 1.21281 * 120.00280 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00036 * 179.97438 * 18 17 2 21 21 H 1.09001 * 109.47046 * 60.00508 * 20 18 17 22 22 C 1.52998 * 109.47574 * 300.00417 * 20 18 17 23 23 O 1.42900 * 109.47426 * 180.02562 * 20 18 17 24 24 C 1.35676 * 117.00228 * 210.00709 * 23 20 18 25 25 C 1.38922 * 119.68298 * 180.02562 * 24 23 20 26 26 C 1.38380 * 119.11001 * 179.97438 * 25 24 23 27 27 C 1.38829 * 118.48477 * 0.02562 * 26 25 24 28 28 C 1.38043 * 119.28775 * 0.25231 * 27 26 25 29 29 N 1.31968 * 120.83596 * 359.45492 * 28 27 26 30 30 H 1.09003 * 109.46696 * 300.00207 * 1 2 3 31 31 H 1.08999 * 109.47216 * 59.99928 * 1 2 3 32 32 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47106 * 295.00050 * 4 2 1 34 34 H 1.09004 * 109.46749 * 55.00421 * 4 2 1 35 35 H 1.08997 * 109.47333 * 300.00090 * 5 4 2 36 36 H 1.09004 * 109.46834 * 60.00653 * 5 4 2 37 37 H 1.08997 * 109.47232 * 300.00770 * 6 5 4 38 38 H 1.09004 * 109.46749 * 60.00601 * 6 5 4 39 39 H 1.09004 * 109.46867 * 300.00248 * 7 6 5 40 40 H 1.09000 * 109.47410 * 59.99855 * 7 6 5 41 41 H 0.97007 * 119.99977 * 359.97438 * 8 7 6 42 42 H 0.97001 * 120.00222 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00016 * 94.99510 * 17 2 1 44 44 H 1.09001 * 109.47008 * 300.00114 * 22 20 18 45 45 H 1.09000 * 109.46873 * 59.99492 * 22 20 18 46 46 H 1.08999 * 109.47334 * 179.97438 * 22 20 18 47 47 H 1.08002 * 120.44550 * 359.97438 * 25 24 23 48 48 H 1.08002 * 120.75560 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35145 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.57882 * 179.72181 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3341 -2.5633 7 6 5.5996 -1.2267 -2.6274 8 7 6.0878 -1.9163 -3.8242 9 6 7.4299 -1.9524 -4.0940 10 1 8.1284 -1.4729 -3.4243 11 6 7.8925 -2.6064 -5.2277 12 7 7.0412 -3.1912 -6.0436 13 14 9.7232 -2.6551 -5.5962 14 1 10.3240 -3.8558 -4.9617 15 1 9.9310 -2.7153 -7.0653 16 1 10.3699 -1.4330 -5.0544 17 7 2.0184 -0.6906 1.1962 18 6 2.1471 -0.0183 2.3571 19 8 1.8583 1.1584 2.4117 20 6 2.6489 -0.7288 3.5877 21 1 3.6481 -1.1213 3.3986 22 6 1.7045 -1.8824 3.9314 23 8 2.6966 0.1893 4.6817 24 6 3.6424 -0.0303 5.6294 25 6 3.7381 0.8279 6.7176 26 6 4.7068 0.5925 7.6774 27 6 5.5500 -0.4981 7.5136 28 6 5.4015 -1.3058 6.4040 29 7 4.4644 -1.0591 5.5082 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9995 -1.0729 -0.4260 37 1 3.7863 -2.3843 -2.5201 38 1 3.6401 -0.8741 -3.4508 39 1 5.8883 -0.1765 -2.6704 40 1 6.0340 -1.6868 -1.7399 41 1 5.4604 -2.3473 -4.4255 42 1 7.3644 -3.6478 -6.8360 43 1 2.2490 -1.6318 1.1527 44 1 0.7053 -1.4898 4.1206 45 1 1.6677 -2.5827 3.0971 46 1 2.0677 -2.3965 4.8213 47 1 3.0655 1.6674 6.8133 48 1 4.8046 1.2424 8.5344 49 1 6.3168 -0.7097 8.2441 50 1 6.0579 -2.1529 6.2695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176183442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:38 Heat of formation + Delta-G solvation = -68.425240 kcal Electronic energy + Delta-G solvation = -27996.943411 eV Core-core repulsion = 24023.355631 eV Total energy + Delta-G solvation = -3973.587781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85834 -40.90618 -38.97293 -37.93924 -36.82184 -34.87460 -33.82476 -33.41412 -32.58508 -31.48081 -30.72994 -28.82692 -26.16809 -25.85268 -24.64862 -24.12518 -23.52870 -22.08474 -21.90330 -21.45453 -19.59757 -19.13862 -18.63832 -17.66791 -17.07689 -16.97773 -16.73015 -16.65326 -16.26496 -16.06460 -15.51236 -15.43073 -15.29786 -15.16894 -14.60373 -14.47571 -14.37777 -14.16112 -14.03137 -13.91708 -13.41133 -13.27461 -13.05027 -12.93729 -12.87270 -12.87021 -12.78378 -12.46728 -12.28694 -12.20358 -12.16785 -11.89431 -11.82951 -11.49705 -11.41081 -10.94797 -10.93930 -10.84718 -10.59577 -10.15947 -9.50895 -9.02459 -7.97415 -5.26737 0.19113 0.31604 1.43520 1.45908 1.48099 1.51007 1.56759 2.46633 2.54555 2.81676 3.28046 3.35665 3.51274 3.63782 3.85167 3.97695 4.02319 4.04579 4.05412 4.11111 4.13764 4.22200 4.33893 4.36437 4.40567 4.59702 4.64170 4.65204 4.67541 4.76474 4.79493 4.86984 4.92004 4.98244 5.00887 5.05089 5.07429 5.10441 5.26368 5.28405 5.31728 5.41307 5.44972 5.50363 5.52275 5.55861 6.15697 6.25536 6.45191 6.84545 7.12103 7.31157 8.07667 8.31440 9.26109 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.002101 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.137823 B =13322.981394 C =15641.394480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.284 1.284 15 H -0.293 1.293 16 H -0.271 1.271 17 N -0.702 5.702 18 C 0.516 3.484 19 O -0.570 6.570 20 C 0.073 3.927 21 H 0.116 0.884 22 C -0.154 4.154 23 O -0.303 6.303 24 C 0.293 3.707 25 C -0.205 4.205 26 C -0.037 4.037 27 C -0.205 4.205 28 C 0.125 3.875 29 N -0.560 5.560 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.017 0.983 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.415 0.585 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.144 0.856 48 H 0.173 0.827 49 H 0.170 0.830 50 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.515 3.233 29.510 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.805 3.195 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.196 1.196 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.449 6.449 20 C 0.013 3.987 21 H 0.134 0.866 22 C -0.211 4.211 23 O -0.210 6.210 24 C 0.115 3.885 25 C -0.226 4.226 26 C -0.062 4.062 27 C -0.225 4.225 28 C -0.030 4.030 29 N -0.284 5.284 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.035 0.965 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.253 0.747 44 H 0.082 0.918 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.162 0.838 48 H 0.190 0.810 49 H 0.187 0.813 50 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.854 3.791 28.819 31.783 hybrid contribution 1.041 -0.074 -0.207 1.064 sum -11.814 3.717 28.612 31.178 Atomic orbital electron populations 1.22116 0.94024 1.03134 1.02232 1.21028 0.94704 0.96665 0.83618 0.91585 1.21850 0.94561 1.02206 0.96685 1.21443 0.95971 1.00090 0.96991 1.21593 0.93630 1.01048 0.98675 1.20859 0.94371 0.94194 0.88474 1.42624 1.04532 1.65436 1.26550 1.19645 0.85327 1.27825 1.05419 0.90978 1.25623 1.02332 1.01194 0.97787 1.69815 1.34680 1.41908 1.15520 0.85103 0.79754 0.78030 0.76655 1.21080 1.21897 1.19613 1.45915 1.66476 1.14735 1.08499 1.20550 0.77384 0.86808 0.85070 1.90706 1.51048 1.17674 1.85488 1.22154 1.03247 0.89489 0.83787 0.86598 1.22128 0.98585 0.95934 1.04483 1.86330 1.50475 1.52204 1.31970 1.20167 0.88027 0.91460 0.88855 1.21351 1.04097 1.02335 0.94769 1.21863 0.90887 0.96114 0.97383 1.22406 1.02693 0.96784 1.00580 1.23006 0.92448 0.98754 0.88769 1.67220 1.08303 1.19930 1.32984 0.94018 0.90360 0.90692 0.89323 0.89275 0.92829 0.91659 0.91635 0.92339 0.97101 0.96462 0.79356 0.93871 0.74703 0.91757 0.87872 0.90789 0.83770 0.80955 0.81291 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 71.98 0.68 -1.85 16 2 C 0.14 2.68 2.57 44.99 0.12 2.79 16 3 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 4 C -0.12 -1.98 4.75 30.60 0.15 -1.83 16 5 C -0.11 -2.49 5.10 30.60 0.16 -2.33 16 6 C -0.11 -3.42 5.33 30.59 0.16 -3.25 16 7 C 0.15 6.07 6.26 86.38 0.54 6.61 16 8 N -0.75 -39.45 5.60 -343.46 -1.92 -41.38 16 9 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 10 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 11 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 12 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 13 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 N -0.70 -12.47 4.42 -442.54 -1.96 -14.43 16 18 C 0.52 12.41 7.20 87.66 0.63 13.04 16 19 O -0.57 -18.97 16.16 16.00 0.26 -18.71 16 20 C 0.07 1.52 2.91 29.85 0.09 1.61 16 21 H 0.12 2.35 6.98 -2.39 -0.02 2.34 16 22 C -0.15 -2.23 9.43 71.98 0.68 -1.55 16 23 O -0.30 -7.74 9.29 -70.90 -0.66 -8.39 16 24 C 0.29 6.49 7.45 84.80 0.63 7.12 16 25 C -0.20 -3.55 10.04 22.47 0.23 -3.32 16 26 C -0.04 -0.41 10.17 22.45 0.23 -0.18 16 27 C -0.20 -2.02 10.11 22.37 0.23 -1.79 16 28 C 0.13 1.72 11.18 84.63 0.95 2.66 16 29 N -0.56 -11.18 8.65 -308.96 -2.67 -13.86 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.46 7.75 -2.38 -0.02 1.44 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.37 20.66 7.67 -92.70 -0.71 19.95 16 42 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 43 H 0.42 5.06 8.02 -92.71 -0.74 4.31 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.10 0.94 7.56 -2.39 -0.02 0.92 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 48 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 49 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 50 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -79.27 417.17 1.60 -77.67 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.53 Total: 30.02 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 6.76 Total: 0.03 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.27 Total: -129.40 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.40 Total: -27.11 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -79.27 1.60 -77.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176183442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.249 kcal (2) G-P(sol) polarization free energy of solvation -79.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds