Wall clock time and date at job start Tue Mar 31 2020 18:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47349 * 2 1 4 4 O 1.42902 * 109.46953 * 120.00035 * 2 1 3 5 5 C 1.35671 * 117.00165 * 269.99988 * 4 2 1 6 6 C 1.38923 * 119.68943 * 180.02562 * 5 4 2 7 7 C 1.38369 * 119.11247 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.49135 * 359.97438 * 7 6 5 9 9 C 1.38049 * 119.28513 * 0.02562 * 8 7 6 10 10 N 1.31967 * 120.83804 * 359.74240 * 9 8 7 11 11 C 1.50699 * 109.47120 * 239.99516 * 2 1 3 12 12 O 1.21277 * 120.00311 * 245.00244 * 11 2 1 13 13 N 1.34781 * 119.99755 * 65.00392 * 11 2 1 14 14 C 1.46501 * 120.00231 * 179.97438 * 13 11 2 15 15 H 1.08997 * 109.46643 * 324.99984 * 14 13 11 16 16 C 1.53002 * 109.47013 * 84.99743 * 14 13 11 17 17 C 1.52996 * 109.47049 * 204.99988 * 14 13 11 18 18 C 1.52997 * 109.47131 * 65.00110 * 17 14 13 19 19 C 1.53006 * 109.47127 * 179.97438 * 18 17 14 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 N 1.46496 * 109.47294 * 179.97438 * 20 19 18 22 22 C 1.36935 * 120.00627 * 179.97438 * 21 20 19 23 23 H 1.08012 * 119.99691 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00809 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99595 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00541 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47144 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47272 * 119.99947 * 26 24 22 29 29 H 1.48504 * 109.47033 * 240.00010 * 26 24 22 30 30 H 1.08995 * 109.47808 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47223 * 300.00529 * 1 2 3 32 32 H 1.09008 * 109.47222 * 59.99931 * 1 2 3 33 33 H 1.08003 * 120.43744 * 359.95434 * 6 5 4 34 34 H 1.08002 * 120.76036 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.36295 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.58233 * 179.97438 * 9 8 7 37 37 H 0.97003 * 120.00102 * 359.97438 * 13 11 2 38 38 H 1.08992 * 109.47133 * 300.00613 * 16 14 13 39 39 H 1.09001 * 109.46843 * 60.00279 * 16 14 13 40 40 H 1.08998 * 109.46646 * 179.97438 * 16 14 13 41 41 H 1.08996 * 109.47452 * 305.00111 * 17 14 13 42 42 H 1.09001 * 109.46997 * 184.99684 * 17 14 13 43 43 H 1.09001 * 109.47502 * 60.00153 * 18 17 14 44 44 H 1.09001 * 109.47289 * 299.99950 * 18 17 14 45 45 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 46 46 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 47 47 H 1.09001 * 109.47289 * 299.99953 * 20 19 18 48 48 H 1.09004 * 109.47261 * 59.99697 * 20 19 18 49 49 H 0.97006 * 119.99755 * 359.97438 * 21 20 19 50 50 H 0.97000 * 120.00324 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 0.0828 2.2742 6 6 2.6746 -0.5149 3.4396 7 6 2.8804 0.2681 4.5618 8 6 2.6149 1.6282 4.4782 9 6 2.1566 2.1547 3.2872 10 7 1.9743 1.3833 2.2321 11 6 2.0323 -0.7105 -1.2304 12 8 2.6529 -1.7468 -1.1214 13 7 1.7919 -0.1943 -2.4520 14 6 2.2807 -0.8846 -3.6481 15 1 3.2410 -1.3522 -3.4308 16 6 1.2733 -1.9582 -4.0648 17 6 2.4505 0.1244 -4.7857 18 6 3.5477 1.1258 -4.4195 19 6 3.7180 2.1344 -5.5574 20 6 4.8157 3.1355 -5.1916 21 7 4.9791 4.1009 -6.2812 22 6 5.9108 5.0991 -6.1778 23 1 6.5249 5.1749 -5.2924 24 6 6.0653 6.0141 -7.2100 25 7 5.3167 5.9220 -8.2886 26 14 7.3368 7.3754 -7.0690 27 1 8.0435 7.2598 -5.7681 28 1 8.3169 7.2540 -8.1779 29 1 6.6601 8.6949 -7.1487 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.8710 -1.5765 3.4694 34 1 3.2401 -0.1688 5.4817 35 1 2.7653 2.2674 5.3355 36 1 1.9482 3.2121 3.2169 37 1 1.2952 0.6344 -2.5392 38 1 1.1523 -2.6769 -3.2544 39 1 0.3130 -1.4906 -4.2821 40 1 1.6368 -2.4715 -4.9550 41 1 1.5118 0.6555 -4.9434 42 1 2.7285 -0.4014 -5.6991 43 1 4.4865 0.5948 -4.2618 44 1 3.2698 1.6515 -3.5060 45 1 3.9963 1.6084 -6.4706 46 1 2.7794 2.6655 -5.7155 47 1 4.5380 3.6616 -4.2782 48 1 5.7542 2.6040 -5.0336 49 1 4.4274 4.0330 -7.0762 50 1 5.4248 6.5612 -9.0102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176183443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:42 Heat of formation + Delta-G solvation = -44.623465 kcal Electronic energy + Delta-G solvation = -28010.261140 eV Core-core repulsion = 24037.705481 eV Total energy + Delta-G solvation = -3972.555658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14952 -40.09165 -38.24182 -36.84987 -35.25117 -33.48945 -32.89829 -32.65395 -31.22867 -30.42659 -29.96912 -27.44796 -25.38581 -24.30712 -23.96309 -23.33391 -22.14179 -21.03141 -20.70632 -20.58182 -18.89574 -17.87060 -16.99377 -16.89727 -16.33515 -16.30219 -16.03687 -15.22181 -15.09174 -14.88985 -14.71626 -14.34350 -14.00089 -13.78573 -13.68221 -13.52169 -13.36283 -13.16019 -12.95236 -12.89531 -12.71302 -12.39122 -12.36104 -12.15867 -11.76965 -11.54277 -11.42576 -11.26114 -10.99962 -10.81545 -10.70649 -10.40275 -10.34205 -10.30034 -10.02751 -9.95735 -9.89693 -9.66176 -9.27710 -8.88371 -8.85101 -6.88922 -5.74416 -3.02694 0.77388 0.87879 2.22416 2.35986 3.21236 3.40745 3.44540 3.50000 3.52490 3.88180 4.30183 4.47359 4.53052 4.53976 4.64454 4.66106 4.69735 4.80476 4.83640 4.89090 4.97563 5.19014 5.25437 5.30550 5.32836 5.39768 5.44820 5.55706 5.56628 5.61169 5.66603 5.69218 5.78315 5.80687 5.88890 5.95512 6.02157 6.10247 6.21032 6.31364 6.36252 6.39593 6.47747 6.83351 6.91082 6.94927 7.23509 7.45800 7.72618 7.96457 8.45065 9.55791 10.15109 10.49714 11.48785 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002136 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.799478 B =13105.232016 C =15489.335036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.116 0.884 4 O -0.277 6.277 5 C 0.323 3.677 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.214 4.214 9 C 0.142 3.858 10 N -0.542 5.542 11 C 0.518 3.482 12 O -0.522 6.522 13 N -0.716 5.716 14 C 0.142 3.858 15 H 0.089 0.911 16 C -0.163 4.163 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.152 3.848 21 N -0.735 5.735 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.402 0.598 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 -15.068 23.708 31.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.011 3.989 3 H 0.134 0.866 4 O -0.182 6.182 5 C 0.144 3.856 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.234 4.234 9 C -0.014 4.014 10 N -0.265 5.265 11 C 0.302 3.698 12 O -0.397 6.397 13 N -0.370 5.370 14 C 0.038 3.962 15 H 0.108 0.892 16 C -0.221 4.221 17 C -0.164 4.164 18 C -0.153 4.153 19 C -0.163 4.163 20 C 0.024 3.976 21 N -0.379 5.379 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.213 4.213 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.000 -15.668 23.013 30.726 hybrid contribution 0.530 1.080 0.397 1.267 sum -12.470 -14.588 23.410 30.271 Atomic orbital electron populations 1.22150 0.92321 1.03582 1.03937 1.22096 0.95782 0.98221 0.82808 0.86641 1.86379 1.79883 1.34374 1.17599 1.19899 0.91268 0.87447 0.86987 1.21095 1.06117 1.02298 0.91429 1.21435 0.94015 0.93461 0.97674 1.22010 1.05100 0.96223 1.00079 1.22463 0.92416 0.99299 0.87219 1.67268 1.21992 1.04633 1.32648 1.20179 0.79843 0.85461 0.84304 1.90733 1.39432 1.23086 1.86459 1.45987 1.57975 1.27864 1.05187 1.21084 0.98336 0.92926 0.83842 0.89245 1.22178 0.99328 0.98812 1.01829 1.21942 1.00112 0.96909 0.97483 1.21531 0.98254 0.96612 0.98908 1.21724 0.99877 0.96833 0.97882 1.20651 0.94879 0.90134 0.91894 1.42399 1.44908 1.31959 1.18639 1.19301 1.11668 1.04297 1.01555 0.91194 1.24755 1.00066 0.99767 0.96692 1.69674 1.42365 1.38674 1.07669 0.86105 0.80878 0.81978 0.77196 1.20563 1.21858 1.21867 0.91280 0.90740 0.90244 0.83968 0.84088 0.84456 0.82174 0.76331 0.92254 0.92392 0.91394 0.91231 0.90059 0.91969 0.92144 0.92035 0.92098 0.96619 0.96582 0.78350 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.49 37.16 0.35 -0.87 16 2 C 0.07 0.72 2.90 -27.88 -0.08 0.64 16 3 H 0.12 1.14 6.98 -51.93 -0.36 0.78 16 4 O -0.28 -3.35 9.30 -38.57 -0.36 -3.71 16 5 C 0.32 3.48 7.46 -17.11 -0.13 3.35 16 6 C -0.19 -1.63 10.04 -39.28 -0.39 -2.03 16 7 C -0.04 -0.26 10.17 -39.31 -0.40 -0.66 16 8 C -0.21 -1.31 10.11 -39.43 -0.40 -1.71 16 9 C 0.14 1.07 11.18 -17.56 -0.20 0.87 16 10 N -0.54 -5.44 8.65 -13.33 -0.12 -5.55 16 11 C 0.52 6.09 7.14 -10.98 -0.08 6.02 16 12 O -0.52 -8.26 16.17 -14.30 -0.23 -8.49 16 13 N -0.72 -6.66 4.49 -53.81 -0.24 -6.91 16 14 C 0.14 1.39 2.57 -67.93 -0.17 1.21 16 15 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 16 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 17 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16 18 C -0.11 -1.42 5.10 -26.73 -0.14 -1.56 16 19 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 20 C 0.15 3.16 6.26 -4.05 -0.03 3.13 16 21 N -0.74 -19.32 5.60 -59.91 -0.34 -19.65 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 24 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 25 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 26 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.44 7.92 -51.92 -0.41 0.03 16 33 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.40 2.83 8.38 -40.82 -0.34 2.49 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 50 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 417.97 15.07 6.30 6.30 Total: -1.00 -35.94 417.97 -9.64 -45.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.54 Total: 6.50 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.82 Total: -3.76 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.03 Total: -60.19 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.59 Total: -12.21 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.94 -9.64 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176183443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.959 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds