Wall clock time and date at job start Tue Mar 31 2020 18:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47349 * 2 1 4 4 O 1.42902 * 109.46953 * 120.00035 * 2 1 3 5 5 C 1.35671 * 117.00165 * 269.99988 * 4 2 1 6 6 C 1.38923 * 119.68943 * 180.02562 * 5 4 2 7 7 C 1.38369 * 119.11247 * 179.97438 * 6 5 4 8 8 C 1.38828 * 118.49135 * 359.97438 * 7 6 5 9 9 C 1.38049 * 119.28513 * 0.02562 * 8 7 6 10 10 N 1.31967 * 120.83804 * 359.74240 * 9 8 7 11 11 C 1.50699 * 109.47120 * 239.99516 * 2 1 3 12 12 O 1.21277 * 120.00311 * 245.00244 * 11 2 1 13 13 N 1.34781 * 119.99755 * 65.00392 * 11 2 1 14 14 C 1.46501 * 120.00231 * 179.97438 * 13 11 2 15 15 H 1.08997 * 109.46643 * 324.99984 * 14 13 11 16 16 C 1.53002 * 109.47013 * 84.99743 * 14 13 11 17 17 C 1.52996 * 109.47049 * 204.99988 * 14 13 11 18 18 C 1.52997 * 109.47131 * 65.00110 * 17 14 13 19 19 C 1.53006 * 109.47127 * 179.97438 * 18 17 14 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 17 21 21 N 1.46496 * 109.47294 * 179.97438 * 20 19 18 22 22 C 1.36935 * 120.00627 * 179.97438 * 21 20 19 23 23 H 1.08012 * 119.99691 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00809 * 180.02562 * 22 21 20 25 25 N 1.31623 * 119.99595 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00541 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47144 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47272 * 119.99947 * 26 24 22 29 29 H 1.48504 * 109.47033 * 240.00010 * 26 24 22 30 30 H 1.08995 * 109.47808 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47223 * 300.00529 * 1 2 3 32 32 H 1.09008 * 109.47222 * 59.99931 * 1 2 3 33 33 H 1.08003 * 120.43744 * 359.95434 * 6 5 4 34 34 H 1.08002 * 120.76036 * 180.02562 * 7 6 5 35 35 H 1.07997 * 120.36295 * 180.02562 * 8 7 6 36 36 H 1.08001 * 119.58233 * 179.97438 * 9 8 7 37 37 H 0.97003 * 120.00102 * 359.97438 * 13 11 2 38 38 H 1.08992 * 109.47133 * 300.00613 * 16 14 13 39 39 H 1.09001 * 109.46843 * 60.00279 * 16 14 13 40 40 H 1.08998 * 109.46646 * 179.97438 * 16 14 13 41 41 H 1.08996 * 109.47452 * 305.00111 * 17 14 13 42 42 H 1.09001 * 109.46997 * 184.99684 * 17 14 13 43 43 H 1.09001 * 109.47502 * 60.00153 * 18 17 14 44 44 H 1.09001 * 109.47289 * 299.99950 * 18 17 14 45 45 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 46 46 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 47 47 H 1.09001 * 109.47289 * 299.99953 * 20 19 18 48 48 H 1.09004 * 109.47261 * 59.99697 * 20 19 18 49 49 H 0.97006 * 119.99755 * 359.97438 * 21 20 19 50 50 H 0.97000 * 120.00324 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2116 0.0828 2.2742 6 6 2.6746 -0.5149 3.4396 7 6 2.8804 0.2681 4.5618 8 6 2.6149 1.6282 4.4782 9 6 2.1566 2.1547 3.2872 10 7 1.9743 1.3833 2.2321 11 6 2.0323 -0.7105 -1.2304 12 8 2.6529 -1.7468 -1.1214 13 7 1.7919 -0.1943 -2.4520 14 6 2.2807 -0.8846 -3.6481 15 1 3.2410 -1.3522 -3.4308 16 6 1.2733 -1.9582 -4.0648 17 6 2.4505 0.1244 -4.7857 18 6 3.5477 1.1258 -4.4195 19 6 3.7180 2.1344 -5.5574 20 6 4.8157 3.1355 -5.1916 21 7 4.9791 4.1009 -6.2812 22 6 5.9108 5.0991 -6.1778 23 1 6.5249 5.1749 -5.2924 24 6 6.0653 6.0141 -7.2100 25 7 5.3167 5.9220 -8.2886 26 14 7.3368 7.3754 -7.0690 27 1 8.0435 7.2598 -5.7681 28 1 8.3169 7.2540 -8.1779 29 1 6.6601 8.6949 -7.1487 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.8710 -1.5765 3.4694 34 1 3.2401 -0.1688 5.4817 35 1 2.7653 2.2674 5.3355 36 1 1.9482 3.2121 3.2169 37 1 1.2952 0.6344 -2.5392 38 1 1.1523 -2.6769 -3.2544 39 1 0.3130 -1.4906 -4.2821 40 1 1.6368 -2.4715 -4.9550 41 1 1.5118 0.6555 -4.9434 42 1 2.7285 -0.4014 -5.6991 43 1 4.4865 0.5948 -4.2618 44 1 3.2698 1.6515 -3.5060 45 1 3.9963 1.6084 -6.4706 46 1 2.7794 2.6655 -5.7155 47 1 4.5380 3.6616 -4.2782 48 1 5.7542 2.6040 -5.0336 49 1 4.4274 4.0330 -7.0762 50 1 5.4248 6.5612 -9.0102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176183443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:41 Heat of formation + Delta-G solvation = -68.683857 kcal Electronic energy + Delta-G solvation = -28011.304476 eV Core-core repulsion = 24037.705481 eV Total energy + Delta-G solvation = -3973.598995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85668 -40.90387 -38.97496 -37.94157 -36.82401 -34.86773 -33.80830 -33.41124 -32.59570 -31.48574 -30.74898 -28.82970 -26.17229 -25.85360 -24.64761 -24.12787 -23.52634 -22.08441 -21.89590 -21.46631 -19.59116 -19.14214 -18.63773 -17.66828 -17.07451 -16.96919 -16.73899 -16.66192 -16.26213 -16.06838 -15.51656 -15.42944 -15.30028 -15.16505 -14.61092 -14.46790 -14.38400 -14.16157 -14.03218 -13.91729 -13.40640 -13.27727 -13.05429 -12.94545 -12.89736 -12.86583 -12.78990 -12.47324 -12.29014 -12.20808 -12.12025 -11.90008 -11.82942 -11.50158 -11.41113 -10.96107 -10.94102 -10.84412 -10.59635 -10.15972 -9.50846 -9.02708 -7.97810 -5.27138 0.19123 0.31580 1.44808 1.45916 1.47103 1.49255 1.57436 2.46734 2.54266 2.81707 3.28109 3.35478 3.51367 3.63871 3.85633 3.97219 4.02242 4.04479 4.05488 4.11164 4.13482 4.22194 4.33835 4.36547 4.40421 4.59531 4.63968 4.64994 4.67349 4.76381 4.79516 4.86819 4.91862 4.98113 5.00681 5.04779 5.07362 5.10229 5.26222 5.28477 5.31715 5.41138 5.44933 5.50227 5.52099 5.55813 6.15613 6.25377 6.45310 6.84469 7.12101 7.30931 8.07295 8.31079 9.25971 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002136 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.799478 B =13105.232016 C =15489.335036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.073 3.927 3 H 0.117 0.883 4 O -0.303 6.303 5 C 0.293 3.707 6 C -0.205 4.205 7 C -0.037 4.037 8 C -0.205 4.205 9 C 0.125 3.875 10 N -0.560 5.560 11 C 0.516 3.484 12 O -0.570 6.570 13 N -0.703 5.703 14 C 0.144 3.856 15 H 0.066 0.934 16 C -0.157 4.157 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.112 4.112 20 C 0.147 3.853 21 N -0.749 5.749 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.976 3.024 27 H -0.268 1.268 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.144 0.856 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.416 0.584 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.017 0.983 48 H 0.011 0.989 49 H 0.375 0.625 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 -14.206 25.103 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.013 3.987 3 H 0.134 0.866 4 O -0.210 6.210 5 C 0.115 3.885 6 C -0.226 4.226 7 C -0.063 4.063 8 C -0.225 4.225 9 C -0.030 4.030 10 N -0.284 5.284 11 C 0.302 3.698 12 O -0.449 6.449 13 N -0.356 5.356 14 C 0.040 3.960 15 H 0.084 0.916 16 C -0.215 4.215 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.149 4.149 20 C 0.021 3.979 21 N -0.391 5.391 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.805 3.195 27 H -0.192 1.192 28 H -0.218 1.218 29 H -0.216 1.216 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.162 0.838 34 H 0.190 0.810 35 H 0.187 0.813 36 H 0.201 0.799 37 H 0.253 0.747 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.035 0.965 48 H 0.029 0.971 49 H 0.206 0.794 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.600 -14.796 24.433 31.636 hybrid contribution 0.734 0.828 0.057 1.108 sum -12.865 -13.967 24.490 30.990 Atomic orbital electron populations 1.22115 0.90371 1.03524 1.05063 1.22153 0.97169 0.97563 0.81787 0.86579 1.86334 1.80640 1.35596 1.18434 1.20173 0.93123 0.88042 0.87194 1.21347 1.06543 1.02894 0.91772 1.21858 0.92886 0.93586 0.97928 1.22407 1.03147 0.96464 1.00451 1.23010 0.92392 1.00249 0.87311 1.67228 1.22647 1.04546 1.33971 1.20550 0.79060 0.84891 0.85313 1.90704 1.41732 1.25270 1.87163 1.45916 1.57209 1.28045 1.04478 1.21026 0.97800 0.93304 0.83878 0.91603 1.22115 0.99751 0.98093 1.01547 1.21846 0.99826 0.96165 0.97458 1.21442 0.99079 0.96287 0.97686 1.21592 0.98103 0.96281 0.98962 1.20860 0.96423 0.90139 0.90478 1.42632 1.44338 1.32545 1.19634 1.19679 1.11951 1.04894 1.01547 0.90973 1.25621 1.02413 1.02399 0.96530 1.69822 1.44092 1.39676 1.08380 0.85038 0.78280 0.78713 0.77518 1.19194 1.21827 1.21643 0.91877 0.90743 0.87874 0.83786 0.80973 0.81299 0.79921 0.74705 0.93988 0.90686 0.90369 0.89319 0.89270 0.92841 0.91688 0.92333 0.91626 0.96478 0.97089 0.79354 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.49 71.98 0.68 -1.56 16 2 C 0.07 1.52 2.90 29.85 0.09 1.60 16 3 H 0.12 2.33 6.98 -2.39 -0.02 2.31 16 4 O -0.30 -7.76 9.30 -70.89 -0.66 -8.42 16 5 C 0.29 6.50 7.46 84.79 0.63 7.13 16 6 C -0.21 -3.57 10.04 22.47 0.23 -3.35 16 7 C -0.04 -0.41 10.17 22.44 0.23 -0.18 16 8 C -0.20 -2.03 10.11 22.37 0.23 -1.81 16 9 C 0.13 1.72 11.18 84.63 0.95 2.67 16 10 N -0.56 -11.16 8.65 -308.94 -2.67 -13.83 16 11 C 0.52 12.40 7.14 87.66 0.63 13.03 16 12 O -0.57 -18.94 16.17 15.97 0.26 -18.68 16 13 N -0.70 -12.49 4.49 -442.54 -1.99 -14.48 16 14 C 0.14 2.68 2.57 44.99 0.12 2.80 16 15 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 16 C -0.16 -2.53 9.48 71.98 0.68 -1.85 16 17 C -0.12 -1.98 4.75 30.59 0.15 -1.83 16 18 C -0.11 -2.50 5.10 30.60 0.16 -2.34 16 19 C -0.11 -3.42 5.33 30.60 0.16 -3.26 16 20 C 0.15 6.07 6.26 86.38 0.54 6.61 16 21 N -0.75 -39.47 5.60 -343.46 -1.92 -41.39 16 22 C -0.25 -14.38 9.99 84.03 0.84 -13.55 16 23 H 0.07 4.04 7.83 -2.90 -0.02 4.02 16 24 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 25 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 26 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 32 H 0.10 0.96 7.92 -2.38 -0.02 0.94 16 33 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.42 5.07 8.38 -92.71 -0.78 4.30 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.46 7.75 -2.39 -0.02 1.45 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.37 20.67 7.67 -92.70 -0.71 19.96 16 50 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -79.30 417.97 1.53 -77.77 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.56 Total: 29.97 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 6.76 Total: 0.04 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -6.30 Total: -129.49 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.40 Total: -27.10 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -79.30 1.53 -77.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176183443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.090 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds