Wall clock time and date at job start Tue Mar 31 2020 18:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46877 * 2 1 4 4 C 1.52995 * 109.46956 * 240.00205 * 2 1 3 5 5 C 1.53002 * 109.47090 * 175.00016 * 4 2 1 6 6 C 1.52998 * 109.47443 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47467 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47249 * 179.97438 * 7 6 5 9 9 C 1.36944 * 120.00047 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99906 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00036 * 180.02562 * 9 8 7 12 12 N 1.31614 * 119.99871 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00025 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47003 * 90.00136 * 13 11 9 15 15 H 1.48497 * 109.47404 * 209.99955 * 13 11 9 16 16 H 1.48503 * 109.47357 * 330.00384 * 13 11 9 17 17 N 1.46495 * 109.47010 * 120.00161 * 2 1 3 18 18 C 1.34780 * 120.00137 * 274.99907 * 17 2 1 19 19 O 1.21281 * 119.99783 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99781 * 179.97438 * 18 17 2 21 21 H 1.08996 * 109.47394 * 304.99621 * 20 18 17 22 22 C 1.52999 * 109.47175 * 65.00195 * 20 18 17 23 23 O 1.42911 * 109.46972 * 185.00088 * 20 18 17 24 24 C 1.35669 * 116.99989 * 149.99817 * 23 20 18 25 25 C 1.38920 * 119.68578 * 180.02562 * 24 23 20 26 26 C 1.38380 * 119.11274 * 179.77040 * 25 24 23 27 27 C 1.38822 * 118.48565 * 0.45491 * 26 25 24 28 28 C 1.38049 * 119.28822 * 359.52021 * 27 26 25 29 29 N 1.31963 * 120.83798 * 0.25915 * 28 27 26 30 30 H 1.08993 * 109.46882 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46958 * 300.00413 * 1 2 3 32 32 H 1.09003 * 109.46431 * 59.99406 * 1 2 3 33 33 H 1.09000 * 109.47011 * 295.00088 * 4 2 1 34 34 H 1.08999 * 109.47042 * 55.00119 * 4 2 1 35 35 H 1.09000 * 109.47252 * 299.99924 * 5 4 2 36 36 H 1.08999 * 109.47094 * 60.00135 * 5 4 2 37 37 H 1.09000 * 109.46903 * 300.00221 * 6 5 4 38 38 H 1.08999 * 109.46797 * 60.00036 * 6 5 4 39 39 H 1.08995 * 109.47282 * 300.00539 * 7 6 5 40 40 H 1.09008 * 109.46738 * 60.00230 * 7 6 5 41 41 H 0.96994 * 120.00220 * 0.02562 * 8 7 6 42 42 H 0.97003 * 120.00064 * 179.97438 * 12 11 9 43 43 H 0.97002 * 119.99916 * 95.00093 * 17 2 1 44 44 H 1.09007 * 109.46938 * 179.97438 * 22 20 18 45 45 H 1.08995 * 109.46897 * 299.99492 * 22 20 18 46 46 H 1.09002 * 109.47136 * 59.99737 * 22 20 18 47 47 H 1.08007 * 120.44034 * 359.97438 * 25 24 23 48 48 H 1.08004 * 120.75375 * 180.24643 * 26 25 24 49 49 H 1.08002 * 120.35805 * 179.80589 * 27 26 25 50 50 H 1.08004 * 119.58517 * 180.23492 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0750 -1.3350 -2.5626 7 6 5.5997 -1.2265 -2.6274 8 7 6.0881 -1.9181 -3.8229 9 6 7.4302 -1.9546 -4.0925 10 1 8.1286 -1.4732 -3.4240 11 6 7.8930 -2.6095 -5.2257 12 7 9.1829 -2.6442 -5.4850 13 14 6.6850 -3.4415 -6.3823 14 1 6.2495 -2.4749 -7.4221 15 1 7.3420 -4.6042 -7.0316 16 1 5.5032 -3.9068 -5.6129 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3572 19 8 1.8583 1.1583 2.4117 20 6 2.6489 -0.7290 3.5877 21 1 2.0274 -1.6032 3.7812 22 6 4.0967 -1.1713 3.3664 23 8 2.5872 0.1566 4.7076 24 6 2.3849 -0.4045 5.9262 25 6 2.3150 0.4046 7.0532 26 6 2.1036 -0.1798 8.2896 27 6 1.9785 -1.5608 8.3564 28 6 2.0580 -2.3031 7.1952 29 7 2.2558 -1.7167 6.0297 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5140 -0.8900 33 1 1.7516 -1.7714 -1.2056 34 1 1.6054 -0.2616 -2.1369 35 1 3.8533 0.4370 -1.3573 36 1 3.9995 -1.0728 -0.4260 37 1 3.7866 -2.3852 -2.5185 38 1 3.6404 -0.8758 -3.4505 39 1 5.8877 -0.1762 -2.6716 40 1 6.0346 -1.6854 -1.7395 41 1 5.4609 -2.3501 -4.4236 42 1 9.5063 -3.1021 -6.2766 43 1 2.2491 -1.6318 1.1525 44 1 4.4598 -1.6849 4.2567 45 1 4.1437 -1.8468 2.5123 46 1 4.7182 -0.2970 3.1729 47 1 2.4210 1.4759 6.9651 48 1 2.0408 0.4244 9.1826 49 1 1.8160 -2.0488 9.3061 50 1 1.9575 -3.3774 7.2412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176183445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:45 Heat of formation + Delta-G solvation = -40.398851 kcal Electronic energy + Delta-G solvation = -27997.508714 eV Core-core repulsion = 24025.136249 eV Total energy + Delta-G solvation = -3972.372465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19373 -40.13556 -38.28600 -36.93236 -35.42624 -33.53196 -32.95168 -32.69302 -31.34921 -30.64939 -30.04637 -27.78115 -25.40710 -24.34904 -23.99597 -23.34891 -21.90566 -21.02473 -20.89402 -20.65509 -18.92253 -17.94088 -17.47027 -16.92704 -16.46738 -16.30473 -16.09043 -15.25645 -15.08097 -14.87813 -14.63358 -14.60527 -14.16610 -13.85746 -13.60916 -13.56896 -13.54571 -13.20861 -13.05693 -12.74711 -12.65684 -12.45443 -12.40167 -12.15742 -11.92845 -11.69905 -11.49975 -11.47382 -11.17275 -10.89514 -10.84524 -10.42200 -10.39664 -10.34520 -10.10287 -10.07993 -9.93026 -9.57804 -9.32949 -8.93050 -8.87731 -7.20990 -5.75403 -3.10597 0.71747 0.82367 2.18754 2.32768 3.17179 3.35386 3.37674 3.40485 3.45428 3.82493 4.27179 4.41719 4.49597 4.55372 4.60228 4.60683 4.63901 4.76844 4.78252 4.83740 4.89729 5.17378 5.23576 5.28774 5.29705 5.33128 5.35942 5.48222 5.51629 5.53521 5.57770 5.64532 5.75330 5.77104 5.79922 5.85764 5.97274 6.01371 6.06747 6.12327 6.17787 6.29339 6.35945 6.78090 6.79523 6.81992 7.19253 7.39895 7.92832 8.01755 8.43920 9.23475 9.95934 10.16192 11.43162 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.001854 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.666646 B =15100.890260 C =16191.712844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.717 5.717 18 C 0.518 3.482 19 O -0.522 6.522 20 C 0.073 3.927 21 H 0.113 0.887 22 C -0.165 4.165 23 O -0.276 6.276 24 C 0.324 3.676 25 C -0.188 4.188 26 C -0.040 4.040 27 C -0.215 4.215 28 C 0.140 3.860 29 N -0.543 5.543 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.402 0.598 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.143 0.857 48 H 0.142 0.858 49 H 0.137 0.863 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.174 1.999 27.727 34.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.167 4.167 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.371 5.371 18 C 0.302 3.698 19 O -0.396 6.396 20 C 0.013 3.987 21 H 0.131 0.869 22 C -0.223 4.223 23 O -0.182 6.182 24 C 0.145 3.855 25 C -0.209 4.209 26 C -0.065 4.065 27 C -0.235 4.235 28 C -0.015 4.015 29 N -0.267 5.267 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.237 0.763 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.161 0.839 48 H 0.159 0.841 49 H 0.155 0.845 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.045 2.701 26.930 34.284 hybrid contribution -0.640 -0.861 -0.232 1.098 sum -21.685 1.839 26.698 34.444 Atomic orbital electron populations 1.22186 0.95287 1.02143 1.02595 1.21072 0.93797 0.97815 0.83485 0.89141 1.21945 0.96866 1.00967 0.96708 1.21521 0.93951 1.01301 0.98527 1.21777 0.97296 1.00269 0.97402 1.20629 0.90762 0.95718 0.89996 1.42735 1.05263 1.66046 1.26308 1.19093 0.82339 1.29218 1.06747 0.89276 1.24691 0.95639 1.00751 0.98283 1.69706 1.11718 1.48311 1.28593 0.86512 0.80869 0.79444 0.81491 1.21097 1.21729 1.20381 1.45979 1.67598 1.14196 1.09299 1.20195 0.77908 0.87418 0.84263 1.90737 1.48731 1.15552 1.84628 1.22102 0.99748 0.93152 0.83715 0.86912 1.22178 0.93658 1.02697 1.03727 1.86393 1.85378 1.34380 1.12020 1.19903 0.91188 0.88374 0.86033 1.21118 1.07575 1.01603 0.90605 1.21442 0.93129 0.94946 0.97031 1.22000 1.06417 0.94794 1.00278 1.22439 0.92402 1.00241 0.86440 1.67262 1.19189 1.10376 1.29860 0.92421 0.92256 0.91387 0.91281 0.90099 0.91716 0.91924 0.92168 0.92090 0.95681 0.95797 0.80747 0.93091 0.76339 0.90714 0.90020 0.90946 0.83899 0.84065 0.84484 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.31 2.57 -67.93 -0.17 1.14 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.13 -1.11 4.75 -26.73 -0.13 -1.24 16 5 C -0.11 -1.29 5.10 -26.73 -0.14 -1.43 16 6 C -0.13 -1.87 5.33 -26.74 -0.14 -2.01 16 7 C 0.16 3.03 6.26 -4.05 -0.03 3.01 16 8 N -0.76 -18.46 5.41 -59.91 -0.32 -18.78 16 9 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 10 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 11 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 12 N -0.94 -29.80 13.97 55.49 0.78 -29.02 16 13 Si 0.89 22.35 27.74 -169.99 -4.71 17.63 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 17 N -0.72 -6.34 4.49 -53.81 -0.24 -6.58 16 18 C 0.52 5.92 7.14 -10.98 -0.08 5.84 16 19 O -0.52 -8.10 16.17 -14.30 -0.23 -8.33 16 20 C 0.07 0.72 2.90 -27.88 -0.08 0.64 16 21 H 0.11 1.00 6.98 -51.93 -0.36 0.63 16 22 C -0.16 -1.42 9.49 37.16 0.35 -1.06 16 23 O -0.28 -3.28 9.30 -38.57 -0.36 -3.64 16 24 C 0.32 3.32 7.45 -17.12 -0.13 3.19 16 25 C -0.19 -1.54 10.04 -39.28 -0.39 -1.94 16 26 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 27 C -0.21 -1.14 10.11 -39.43 -0.40 -1.54 16 28 C 0.14 0.93 11.18 -17.56 -0.20 0.73 16 29 N -0.54 -5.02 8.65 -13.33 -0.12 -5.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 7.75 -51.93 -0.40 0.27 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.36 8.48 5.53 -40.82 -0.23 8.25 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 43 H 0.40 2.63 8.38 -40.82 -0.34 2.29 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 48 H 0.14 0.42 8.06 -52.48 -0.42 0.00 16 49 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 50 H 0.16 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 414.86 15.07 6.25 6.25 Total: -1.00 -36.53 414.86 -9.28 -45.81 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.49 Total: 5.40 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.83 Total: -3.62 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.09 Total: -59.52 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.59 Total: -11.97 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.53 -9.28 -45.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176183445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.414 kcal (2) G-P(sol) polarization free energy of solvation -36.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds