Wall clock time and date at job start Tue Mar 31 2020 18:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46877 * 2 1 4 4 C 1.52995 * 109.46956 * 240.00205 * 2 1 3 5 5 C 1.53002 * 109.47090 * 175.00016 * 4 2 1 6 6 C 1.52998 * 109.47443 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47467 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47249 * 179.97438 * 7 6 5 9 9 C 1.36944 * 120.00047 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99906 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00036 * 180.02562 * 9 8 7 12 12 N 1.31614 * 119.99871 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00025 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47003 * 90.00136 * 13 11 9 15 15 H 1.48497 * 109.47404 * 209.99955 * 13 11 9 16 16 H 1.48503 * 109.47357 * 330.00384 * 13 11 9 17 17 N 1.46495 * 109.47010 * 120.00161 * 2 1 3 18 18 C 1.34780 * 120.00137 * 274.99907 * 17 2 1 19 19 O 1.21281 * 119.99783 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99781 * 179.97438 * 18 17 2 21 21 H 1.08996 * 109.47394 * 304.99621 * 20 18 17 22 22 C 1.52999 * 109.47175 * 65.00195 * 20 18 17 23 23 O 1.42911 * 109.46972 * 185.00088 * 20 18 17 24 24 C 1.35669 * 116.99989 * 149.99817 * 23 20 18 25 25 C 1.38920 * 119.68578 * 180.02562 * 24 23 20 26 26 C 1.38380 * 119.11274 * 179.77040 * 25 24 23 27 27 C 1.38822 * 118.48565 * 0.45491 * 26 25 24 28 28 C 1.38049 * 119.28822 * 359.52021 * 27 26 25 29 29 N 1.31963 * 120.83798 * 0.25915 * 28 27 26 30 30 H 1.08993 * 109.46882 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46958 * 300.00413 * 1 2 3 32 32 H 1.09003 * 109.46431 * 59.99406 * 1 2 3 33 33 H 1.09000 * 109.47011 * 295.00088 * 4 2 1 34 34 H 1.08999 * 109.47042 * 55.00119 * 4 2 1 35 35 H 1.09000 * 109.47252 * 299.99924 * 5 4 2 36 36 H 1.08999 * 109.47094 * 60.00135 * 5 4 2 37 37 H 1.09000 * 109.46903 * 300.00221 * 6 5 4 38 38 H 1.08999 * 109.46797 * 60.00036 * 6 5 4 39 39 H 1.08995 * 109.47282 * 300.00539 * 7 6 5 40 40 H 1.09008 * 109.46738 * 60.00230 * 7 6 5 41 41 H 0.96994 * 120.00220 * 0.02562 * 8 7 6 42 42 H 0.97003 * 120.00064 * 179.97438 * 12 11 9 43 43 H 0.97002 * 119.99916 * 95.00093 * 17 2 1 44 44 H 1.09007 * 109.46938 * 179.97438 * 22 20 18 45 45 H 1.08995 * 109.46897 * 299.99492 * 22 20 18 46 46 H 1.09002 * 109.47136 * 59.99737 * 22 20 18 47 47 H 1.08007 * 120.44034 * 359.97438 * 25 24 23 48 48 H 1.08004 * 120.75375 * 180.24643 * 26 25 24 49 49 H 1.08002 * 120.35805 * 179.80589 * 27 26 25 50 50 H 1.08004 * 119.58517 * 180.23492 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0750 -1.3350 -2.5626 7 6 5.5997 -1.2265 -2.6274 8 7 6.0881 -1.9181 -3.8229 9 6 7.4302 -1.9546 -4.0925 10 1 8.1286 -1.4732 -3.4240 11 6 7.8930 -2.6095 -5.2257 12 7 9.1829 -2.6442 -5.4850 13 14 6.6850 -3.4415 -6.3823 14 1 6.2495 -2.4749 -7.4221 15 1 7.3420 -4.6042 -7.0316 16 1 5.5032 -3.9068 -5.6129 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3572 19 8 1.8583 1.1583 2.4117 20 6 2.6489 -0.7290 3.5877 21 1 2.0274 -1.6032 3.7812 22 6 4.0967 -1.1713 3.3664 23 8 2.5872 0.1566 4.7076 24 6 2.3849 -0.4045 5.9262 25 6 2.3150 0.4046 7.0532 26 6 2.1036 -0.1798 8.2896 27 6 1.9785 -1.5608 8.3564 28 6 2.0580 -2.3031 7.1952 29 7 2.2558 -1.7167 6.0297 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5140 -0.8900 33 1 1.7516 -1.7714 -1.2056 34 1 1.6054 -0.2616 -2.1369 35 1 3.8533 0.4370 -1.3573 36 1 3.9995 -1.0728 -0.4260 37 1 3.7866 -2.3852 -2.5185 38 1 3.6404 -0.8758 -3.4505 39 1 5.8877 -0.1762 -2.6716 40 1 6.0346 -1.6854 -1.7395 41 1 5.4609 -2.3501 -4.4236 42 1 9.5063 -3.1021 -6.2766 43 1 2.2491 -1.6318 1.1525 44 1 4.4598 -1.6849 4.2567 45 1 4.1437 -1.8468 2.5123 46 1 4.7182 -0.2970 3.1729 47 1 2.4210 1.4759 6.9651 48 1 2.0408 0.4244 9.1826 49 1 1.8160 -2.0488 9.3061 50 1 1.9575 -3.3774 7.2412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176183445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:44 Heat of formation + Delta-G solvation = -65.653006 kcal Electronic energy + Delta-G solvation = -27998.603816 eV Core-core repulsion = 24025.136249 eV Total energy + Delta-G solvation = -3973.467568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.86252 -40.90732 -38.98054 -37.98458 -36.92496 -34.86028 -33.85759 -33.42196 -32.89811 -31.58351 -30.76206 -29.05542 -26.19836 -25.70254 -24.62774 -24.07883 -23.37675 -22.20933 -21.84968 -21.49464 -19.63072 -19.57337 -18.65217 -17.66797 -17.14494 -16.92699 -16.72904 -16.63418 -16.31132 -15.92161 -15.72056 -15.48431 -15.43398 -14.88224 -14.68834 -14.53352 -14.33487 -14.16011 -14.14126 -13.99400 -13.55668 -13.40985 -13.11184 -12.97199 -12.94115 -12.93105 -12.79437 -12.48412 -12.29030 -12.20905 -12.07655 -11.88472 -11.77667 -11.51012 -11.44166 -10.97422 -10.94298 -10.85128 -10.60027 -10.16513 -9.50922 -9.31100 -8.04155 -5.38393 0.19167 0.31242 1.37469 1.42402 1.43747 1.49246 1.49969 2.46326 2.48253 2.81742 3.26907 3.27381 3.46398 3.58075 3.84518 3.90640 3.94657 4.01555 4.05343 4.08644 4.11269 4.22047 4.33087 4.35800 4.38216 4.57463 4.62624 4.64208 4.65702 4.74523 4.79529 4.87406 4.90369 4.97861 5.01802 5.05384 5.07744 5.10194 5.25129 5.28677 5.30389 5.40872 5.50473 5.51130 5.56164 5.73829 6.15759 6.20126 6.45061 6.84012 7.06967 7.11935 7.83191 8.03663 9.17483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.001854 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.666646 B =15100.890260 C =16191.712844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.116 4.116 7 C 0.149 3.851 8 N -0.760 5.760 9 C -0.242 4.242 10 H 0.051 0.949 11 C -0.068 4.068 12 N -0.985 5.985 13 Si 0.963 3.037 14 H -0.277 1.277 15 H -0.294 1.294 16 H -0.247 1.247 17 N -0.702 5.702 18 C 0.516 3.484 19 O -0.570 6.570 20 C 0.077 3.923 21 H 0.124 0.876 22 C -0.158 4.158 23 O -0.304 6.304 24 C 0.293 3.707 25 C -0.207 4.207 26 C -0.037 4.037 27 C -0.205 4.205 28 C 0.127 3.873 29 N -0.559 5.559 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.015 0.985 40 H 0.021 0.979 41 H 0.368 0.632 42 H 0.259 0.741 43 H 0.416 0.584 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.056 0.944 47 H 0.142 0.858 48 H 0.172 0.828 49 H 0.171 0.829 50 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.961 -0.054 28.506 37.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.153 4.153 7 C 0.023 3.977 8 N -0.406 5.406 9 C -0.373 4.373 10 H 0.069 0.931 11 C -0.259 4.259 12 N -0.635 5.635 13 Si 0.789 3.211 14 H -0.204 1.204 15 H -0.221 1.221 16 H -0.171 1.171 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.449 6.449 20 C 0.017 3.983 21 H 0.141 0.859 22 C -0.216 4.216 23 O -0.211 6.211 24 C 0.115 3.885 25 C -0.227 4.227 26 C -0.063 4.063 27 C -0.224 4.224 28 C -0.028 4.028 29 N -0.283 5.283 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.075 0.925 47 H 0.160 0.840 48 H 0.189 0.811 49 H 0.188 0.812 50 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -23.870 0.625 27.737 36.599 hybrid contribution 0.289 -0.192 -0.313 0.467 sum -23.580 0.433 27.424 36.171 Atomic orbital electron populations 1.22128 0.94296 1.03031 1.02160 1.21044 0.94509 0.96808 0.83757 0.91519 1.21848 0.94631 1.02219 0.96546 1.21457 0.95854 1.00254 0.97212 1.21657 0.93064 1.01550 0.99069 1.20858 0.94525 0.94366 0.87965 1.42742 1.03460 1.66498 1.27901 1.19072 0.84119 1.28160 1.05980 0.93089 1.25625 0.97748 1.02077 1.00466 1.69904 1.14320 1.49827 1.29482 0.85300 0.79004 0.77923 0.78895 1.20357 1.22070 1.17115 1.45909 1.66443 1.14744 1.08535 1.20548 0.77189 0.86894 0.85217 1.90708 1.51078 1.17665 1.85441 1.22122 1.00413 0.92913 0.82814 0.85872 1.22142 0.92590 1.02307 1.04517 1.86349 1.86093 1.35660 1.13037 1.20164 0.93241 0.89268 0.85840 1.21350 1.08393 1.01737 0.91258 1.21856 0.91713 0.95719 0.96975 1.22414 1.04247 0.94568 1.01213 1.23036 0.91896 1.01697 0.86189 1.67226 1.19772 1.09968 1.31366 0.90795 0.94360 0.90203 0.89202 0.89082 0.92798 0.91480 0.90923 0.91575 0.96724 0.96101 0.79913 0.93262 0.74656 0.90668 0.88070 0.92505 0.84017 0.81071 0.81197 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.48 71.99 0.68 -1.73 16 2 C 0.14 2.45 2.57 44.99 0.12 2.57 16 3 H 0.07 1.50 7.58 -2.39 -0.02 1.49 16 4 C -0.11 -1.67 4.75 30.59 0.15 -1.52 16 5 C -0.11 -2.22 5.10 30.59 0.16 -2.07 16 6 C -0.12 -3.02 5.33 30.59 0.16 -2.86 16 7 C 0.15 5.65 6.26 86.38 0.54 6.19 16 8 N -0.76 -36.13 5.41 -343.46 -1.86 -37.99 16 9 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 10 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 11 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 12 N -0.99 -64.15 13.97 21.65 0.30 -63.85 16 13 Si 0.96 45.47 27.74 68.60 1.90 47.37 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 15 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 16 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 17 N -0.70 -11.71 4.49 -442.54 -1.99 -13.70 16 18 C 0.52 12.07 7.14 87.66 0.63 12.70 16 19 O -0.57 -18.69 16.17 15.96 0.26 -18.43 16 20 C 0.08 1.57 2.90 29.85 0.09 1.66 16 21 H 0.12 2.17 6.98 -2.39 -0.02 2.15 16 22 C -0.16 -2.72 9.49 71.98 0.68 -2.04 16 23 O -0.30 -7.70 9.30 -70.87 -0.66 -8.36 16 24 C 0.29 6.20 7.45 84.79 0.63 6.83 16 25 C -0.21 -3.44 10.04 22.47 0.23 -3.22 16 26 C -0.04 -0.37 10.17 22.44 0.23 -0.14 16 27 C -0.20 -1.65 10.11 22.36 0.23 -1.43 16 28 C 0.13 1.45 11.18 84.63 0.95 2.40 16 29 N -0.56 -10.10 8.65 -308.95 -2.67 -12.78 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.30 7.75 -2.39 -0.02 1.29 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.37 16.27 5.53 -92.71 -0.51 15.75 16 42 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 43 H 0.42 4.53 8.38 -92.71 -0.78 3.75 16 44 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.10 1.27 7.92 -2.39 -0.02 1.25 16 46 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 49 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 50 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -82.92 414.86 1.67 -81.24 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.42 Total: 26.14 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.80 Total: 0.35 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -6.21 Total: -128.31 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.40 Total: -26.79 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.90 Total: 47.37 kcal Total: -82.92 1.67 -81.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176183445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.592 kcal (2) G-P(sol) polarization free energy of solvation -82.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds