Wall clock time and date at job start Tue Mar 31 2020 18:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9 16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 O 1.42899 * 109.46887 * 179.97438 * 20 18 17 22 22 C 1.42904 * 113.99873 * 179.97438 * 21 20 18 23 23 C 1.50707 * 109.46806 * 180.02562 * 22 21 20 24 24 C 1.38676 * 120.41865 * 269.71858 * 23 22 21 25 25 C 1.38621 * 118.41792 * 179.78361 * 24 23 22 26 26 C 1.38225 * 119.16406 * 0.51531 * 25 24 23 27 27 N 1.31852 * 120.76291 * 359.72627 * 26 25 24 28 28 C 1.31883 * 121.72737 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 30 30 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 31 31 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 33 33 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 43 43 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 44 44 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 45 45 H 1.08998 * 109.47243 * 300.00123 * 22 21 20 46 46 H 1.08994 * 109.46929 * 60.00606 * 22 21 20 47 47 H 1.08001 * 120.78763 * 0.02975 * 24 23 22 48 48 H 1.08009 * 120.41737 * 180.22334 * 25 24 23 49 49 H 1.08003 * 119.62043 * 179.74084 * 26 25 24 50 50 H 1.08001 * 119.62325 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.4617 -1.9278 4.5327 15 1 9.9815 -2.0100 6.9080 16 1 10.1818 -4.0673 5.6398 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 8 2.6975 0.1892 -4.6814 22 6 3.1642 -0.3865 -5.9033 23 6 3.1739 0.6653 -6.9826 24 6 2.0576 0.8618 -7.7816 25 6 2.1102 1.8436 -8.7588 26 6 3.2691 2.5816 -8.9103 27 7 4.3134 2.3640 -8.1355 28 6 4.2974 1.4419 -7.1927 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7713 1.2058 33 1 1.6053 -0.2615 2.1370 34 1 3.8530 0.4372 1.3574 35 1 3.9994 -1.0727 0.4262 36 1 3.6401 -0.8755 3.4507 37 1 3.7865 -2.3850 2.5188 38 1 6.0345 -1.6850 1.7398 39 1 5.8874 -0.1758 2.6719 40 1 5.4606 -2.3487 4.4245 41 1 7.3646 -3.6493 6.8350 42 1 2.2492 -1.6318 -1.1524 43 1 3.6494 -1.1205 -3.3977 44 1 1.9780 -1.5510 -3.8323 45 1 4.1744 -0.7704 -5.7615 46 1 2.5032 -1.2021 -6.1963 47 1 1.1670 0.2666 -7.6432 48 1 1.2581 2.0264 -9.3968 49 1 3.3196 3.3456 -9.6721 50 1 5.1724 1.2920 -6.5776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176350293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:01 Heat of formation + Delta-G solvation = -53.143230 kcal Electronic energy + Delta-G solvation = -27090.317520 eV Core-core repulsion = 23117.392417 eV Total energy + Delta-G solvation = -3972.925103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.64527 -40.11863 -38.13621 -36.84075 -35.25622 -33.42683 -33.27596 -32.23104 -31.71738 -30.38373 -28.41560 -27.46276 -26.37735 -24.22285 -24.01723 -22.48668 -22.33337 -21.20493 -20.77996 -20.63920 -17.86075 -17.38055 -17.24489 -17.15480 -16.97685 -16.31626 -16.15757 -15.72647 -15.02198 -14.81582 -14.69203 -14.41411 -14.17577 -13.93491 -13.72244 -13.56562 -13.50667 -13.16708 -13.06687 -12.96227 -12.67769 -12.51508 -12.35813 -11.86301 -11.78571 -11.47815 -11.27659 -11.01229 -10.82638 -10.72255 -10.41521 -10.32299 -10.30650 -10.26135 -10.00101 -9.96159 -9.85524 -9.67351 -9.51512 -9.27658 -8.86325 -6.90225 -5.75666 -3.04027 0.57019 0.83536 2.38519 2.51108 3.30422 3.43707 3.49364 3.51684 3.71530 4.04569 4.28543 4.29502 4.43508 4.49459 4.53481 4.55444 4.64779 4.68309 4.76022 4.84055 4.88097 4.90561 4.96282 5.16257 5.23701 5.31880 5.38513 5.43337 5.54356 5.60069 5.63657 5.67606 5.76869 5.76907 5.87574 5.93849 6.08536 6.19609 6.22768 6.29477 6.33871 6.37985 6.45882 6.52571 6.89218 6.93177 7.25646 7.53586 7.71579 8.00159 8.43766 9.54622 10.13843 10.48335 11.47495 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.001632 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.712670 B =17155.682538 C =19009.601331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 N -0.721 5.721 18 C 0.514 3.486 19 O -0.520 6.520 20 C 0.042 3.958 21 O -0.357 6.357 22 C 0.105 3.895 23 C -0.142 4.142 24 C -0.053 4.053 25 C -0.177 4.177 26 C 0.104 3.896 27 N -0.487 5.487 28 C 0.123 3.877 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.401 0.599 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.157 0.843 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.511 4.223 -28.936 33.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.375 5.375 18 C 0.299 3.701 19 O -0.394 6.394 20 C -0.038 4.038 21 O -0.275 6.275 22 C 0.028 3.972 23 C -0.144 4.144 24 C -0.079 4.079 25 C -0.197 4.197 26 C -0.053 4.053 27 N -0.195 5.195 28 C -0.034 4.034 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.064 0.936 42 H 0.235 0.765 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.153 0.847 48 H 0.155 0.845 49 H 0.174 0.826 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.832 5.837 -29.108 33.646 hybrid contribution 0.179 -1.526 0.628 1.660 sum -15.654 4.311 -28.480 32.783 Atomic orbital electron populations 1.22180 0.95341 1.02080 1.02562 1.21055 0.93746 0.97775 0.83577 0.89269 1.21943 0.96906 1.00936 0.96677 1.21523 0.93922 1.01160 0.98628 1.21729 0.97260 1.00240 0.97125 1.20649 0.91003 0.95356 0.90542 1.42395 1.05346 1.64947 1.25208 1.19311 0.83945 1.28301 1.05433 0.91161 1.24743 0.97730 1.00989 0.97686 1.69670 1.32685 1.40867 1.15125 0.86111 0.85077 0.77203 0.77792 1.20560 1.21850 1.21870 1.45994 1.67889 1.14178 1.09462 1.20174 0.78227 0.87514 0.84185 1.90745 1.48402 1.15673 1.84602 1.22248 1.02097 0.92559 0.86905 1.88098 1.87090 1.35220 1.17100 1.21276 0.99691 0.93298 0.82902 1.20559 0.95848 1.00118 0.97910 1.21532 0.97362 0.95940 0.93086 1.22170 1.00031 0.97534 0.99926 1.22870 0.88570 0.97288 0.96599 1.67758 1.29575 1.17100 1.05095 1.22756 0.97391 0.89628 0.93604 0.91430 0.92288 0.92460 0.91293 0.90118 0.91942 0.92160 0.92039 0.92131 0.96649 0.96552 0.78360 0.93600 0.76459 0.89773 0.90158 0.91501 0.91859 0.84668 0.84510 0.82572 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.34 2.57 -67.94 -0.17 1.16 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.13 -1.18 4.75 -26.73 -0.13 -1.30 16 5 C -0.11 -1.36 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.95 5.33 -26.73 -0.14 -2.09 16 7 C 0.15 3.10 6.26 -4.05 -0.03 3.07 16 8 N -0.74 -19.09 5.60 -59.91 -0.34 -19.43 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 10 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 13 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 N -0.72 -6.04 4.53 -53.81 -0.24 -6.29 16 18 C 0.51 5.45 7.87 -10.98 -0.09 5.37 16 19 O -0.52 -8.03 16.16 -14.35 -0.23 -8.27 16 20 C 0.04 0.31 6.42 36.01 0.23 0.54 16 21 O -0.36 -3.54 9.86 -55.14 -0.54 -4.08 16 22 C 0.11 0.69 6.09 36.01 0.22 0.91 16 23 C -0.14 -1.13 5.53 -104.48 -0.58 -1.70 16 24 C -0.05 -0.36 9.86 -39.28 -0.39 -0.75 16 25 C -0.18 -1.10 10.11 -39.44 -0.40 -1.50 16 26 C 0.10 0.78 11.18 -17.55 -0.20 0.58 16 27 N -0.49 -4.82 10.36 -13.25 -0.14 -4.96 16 28 C 0.12 1.10 10.86 -17.55 -0.19 0.91 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 41 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 46 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 47 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 48 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 49 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 50 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 421.22 15.07 6.35 6.35 Total: -1.00 -37.35 421.22 -9.94 -47.29 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.61 Total: 4.52 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.89 Total: -4.90 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.01 Total: -58.53 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.78 Total: -12.34 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -37.35 -9.94 -47.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176350293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.849 kcal (2) G-P(sol) polarization free energy of solvation -37.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds