Wall clock time and date at job start Tue Mar 31 2020 18:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46661 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99223 * 2 1 3 5 5 C 1.52997 * 109.47131 * 185.00232 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.46953 * 179.97438 * 7 6 5 9 9 C 1.36942 * 120.00106 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99638 * 0.02562 * 9 8 7 11 11 C 1.38805 * 120.00269 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00181 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47144 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47391 * 120.00172 * 13 11 9 16 16 H 1.48500 * 109.47521 * 240.00541 * 13 11 9 17 17 N 1.46493 * 109.47372 * 239.99771 * 2 1 3 18 18 C 1.34778 * 120.00226 * 85.00029 * 17 2 1 19 19 O 1.21281 * 119.99825 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 O 1.42899 * 109.46887 * 179.97438 * 20 18 17 22 22 C 1.42904 * 113.99873 * 179.97438 * 21 20 18 23 23 C 1.50707 * 109.46806 * 180.02562 * 22 21 20 24 24 C 1.38676 * 120.41865 * 269.71858 * 23 22 21 25 25 C 1.38621 * 118.41792 * 179.78361 * 24 23 22 26 26 C 1.38225 * 119.16406 * 0.51531 * 25 24 23 27 27 N 1.31852 * 120.76291 * 359.72627 * 26 25 24 28 28 C 1.31883 * 121.72737 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47849 * 300.00752 * 1 2 3 30 30 H 1.09002 * 109.47074 * 60.00645 * 1 2 3 31 31 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46993 * 65.00101 * 4 2 1 33 33 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 34 34 H 1.09001 * 109.46832 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47194 * 299.99846 * 5 4 2 36 36 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 37 37 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 38 38 H 1.08996 * 109.46952 * 300.00302 * 7 6 5 39 39 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 40 40 H 0.96999 * 120.00356 * 0.02562 * 8 7 6 41 41 H 0.97000 * 120.00516 * 179.97438 * 12 11 9 42 42 H 0.97003 * 119.99788 * 264.99268 * 17 2 1 43 43 H 1.09000 * 109.47305 * 299.99746 * 20 18 17 44 44 H 1.08993 * 109.47118 * 59.99813 * 20 18 17 45 45 H 1.08998 * 109.47243 * 300.00123 * 22 21 20 46 46 H 1.08994 * 109.46929 * 60.00606 * 22 21 20 47 47 H 1.08001 * 120.78763 * 0.02975 * 24 23 22 48 48 H 1.08009 * 120.41737 * 180.22334 * 25 24 23 49 49 H 1.08003 * 119.62043 * 179.74084 * 26 25 24 50 50 H 1.08001 * 119.62325 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 6 4.0748 -1.3347 2.5629 7 6 5.5996 -1.2262 2.6277 8 7 6.0878 -1.9166 3.8239 9 6 7.4299 -1.9529 4.0937 10 1 8.1284 -1.4722 3.4247 11 6 7.8925 -2.6067 5.2274 12 7 7.0414 -3.1921 6.0429 13 14 9.7232 -2.6556 5.5958 14 1 10.4617 -1.9278 4.5327 15 1 9.9815 -2.0100 6.9080 16 1 10.1818 -4.0673 5.6398 17 7 2.0184 -0.6906 -1.1961 18 6 2.1471 -0.0183 -2.3571 19 8 1.8583 1.1583 -2.4117 20 6 2.6501 -0.7287 -3.5873 21 8 2.6975 0.1892 -4.6814 22 6 3.1642 -0.3865 -5.9033 23 6 3.1739 0.6653 -6.9826 24 6 2.0576 0.8618 -7.7816 25 6 2.1102 1.8436 -8.7588 26 6 3.2691 2.5816 -8.9103 27 7 4.3134 2.3640 -8.1355 28 6 4.2974 1.4419 -7.1927 29 1 -0.3635 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7713 1.2058 33 1 1.6053 -0.2615 2.1370 34 1 3.8530 0.4372 1.3574 35 1 3.9994 -1.0727 0.4262 36 1 3.6401 -0.8755 3.4507 37 1 3.7865 -2.3850 2.5188 38 1 6.0345 -1.6850 1.7398 39 1 5.8874 -0.1758 2.6719 40 1 5.4606 -2.3487 4.4245 41 1 7.3646 -3.6493 6.8350 42 1 2.2492 -1.6318 -1.1524 43 1 3.6494 -1.1205 -3.3977 44 1 1.9780 -1.5510 -3.8323 45 1 4.1744 -0.7704 -5.7615 46 1 2.5032 -1.2021 -6.1963 47 1 1.1670 0.2666 -7.6432 48 1 1.2581 2.0264 -9.3968 49 1 3.3196 3.3456 -9.6721 50 1 5.1724 1.2920 -6.5776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176350293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:00 Heat of formation + Delta-G solvation = -78.279957 kcal Electronic energy + Delta-G solvation = -27091.407530 eV Core-core repulsion = 23117.392417 eV Total energy + Delta-G solvation = -3974.015113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19876 -40.87939 -38.76642 -37.86552 -36.78012 -34.77417 -33.96294 -33.07953 -32.69615 -31.80269 -29.03328 -28.78873 -26.91406 -25.90652 -24.55443 -23.76253 -22.99560 -22.18833 -21.96720 -21.50047 -19.12824 -18.48917 -17.94601 -17.85669 -17.68850 -17.01613 -16.81321 -16.68691 -16.31733 -16.12183 -15.50821 -15.42286 -15.23091 -15.06528 -14.76199 -14.55962 -14.33374 -14.17556 -14.05552 -13.99559 -13.35840 -13.24259 -13.05450 -12.98753 -12.89764 -12.85568 -12.45586 -12.35114 -12.25047 -12.11181 -11.88730 -11.80648 -11.47997 -11.38961 -10.95036 -10.91542 -10.79265 -10.74922 -10.41534 -10.07264 -10.05549 -9.01397 -7.97093 -5.26190 0.03680 0.30595 1.46697 1.47663 1.57918 1.61688 1.89172 2.54958 2.73468 3.19021 3.36538 3.54002 3.59842 3.76839 3.86294 3.91681 4.04153 4.04813 4.06501 4.07195 4.15223 4.25532 4.31735 4.36785 4.42553 4.43842 4.49410 4.61458 4.65768 4.70668 4.79414 4.82812 4.88660 4.93851 4.99940 5.03199 5.13398 5.14397 5.26700 5.27773 5.32720 5.45490 5.46446 5.54088 5.59518 5.73248 6.02252 6.26156 6.60578 6.97865 7.28799 7.31902 8.08718 8.32003 9.26678 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.001632 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.712670 B =17155.682538 C =19009.601331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.062 0.938 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.268 1.268 15 H -0.292 1.292 16 H -0.290 1.290 17 N -0.708 5.708 18 C 0.508 3.492 19 O -0.578 6.578 20 C 0.043 3.957 21 O -0.393 6.393 22 C 0.105 3.895 23 C -0.153 4.153 24 C -0.062 4.062 25 C -0.174 4.174 26 C 0.087 3.913 27 N -0.521 5.521 28 C 0.100 3.900 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.417 0.583 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.157 0.843 48 H 0.166 0.834 49 H 0.178 0.822 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 2.899 -30.114 34.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.217 1.217 17 N -0.363 5.363 18 C 0.295 3.705 19 O -0.457 6.457 20 C -0.036 4.036 21 O -0.313 6.313 22 C 0.029 3.971 23 C -0.156 4.156 24 C -0.088 4.088 25 C -0.193 4.193 26 C -0.069 4.069 27 N -0.230 5.230 28 C -0.057 4.057 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.254 0.746 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.175 0.825 48 H 0.184 0.816 49 H 0.195 0.805 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.526 4.487 -30.313 34.816 hybrid contribution 0.362 -1.081 0.948 1.482 sum -16.164 3.406 -29.365 33.693 Atomic orbital electron populations 1.22113 0.94382 1.02993 1.02028 1.20934 0.94434 0.96585 0.84035 0.91955 1.21837 0.94667 1.02136 0.96671 1.21431 0.95846 1.00013 0.97064 1.21601 0.93654 1.01046 0.98704 1.20869 0.94338 0.94189 0.88524 1.42631 1.04503 1.65345 1.26668 1.19705 0.85383 1.27700 1.05443 0.90872 1.25585 1.02190 1.01193 0.97767 1.69816 1.34607 1.41947 1.15575 0.85056 0.79918 0.77112 0.77564 1.19198 1.21928 1.21677 1.45911 1.66864 1.14820 1.08676 1.20877 0.77212 0.86966 0.85461 1.90719 1.51163 1.18275 1.85574 1.22391 1.04015 0.92287 0.84870 1.88046 1.87604 1.37135 1.18498 1.21436 1.01085 0.93202 0.81425 1.20805 0.95808 1.00381 0.98558 1.21915 0.97775 0.96253 0.92862 1.22517 1.00380 0.96623 0.99794 1.23328 0.88654 0.98097 0.96827 1.67719 1.31114 1.18056 1.06139 1.22944 0.98347 0.90310 0.94079 0.90736 0.94108 0.90733 0.89338 0.89748 0.92983 0.91206 0.92604 0.91601 0.96220 0.97133 0.79402 0.93901 0.74562 0.87459 0.86653 0.90123 0.89339 0.82521 0.81617 0.80534 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 71.98 0.68 -1.77 16 2 C 0.14 2.54 2.57 44.99 0.12 2.65 16 3 H 0.06 1.46 7.58 -2.38 -0.02 1.45 16 4 C -0.12 -1.88 4.75 30.59 0.15 -1.73 16 5 C -0.11 -2.32 5.10 30.60 0.16 -2.17 16 6 C -0.11 -3.33 5.33 30.60 0.16 -3.17 16 7 C 0.15 5.91 6.26 86.38 0.54 6.45 16 8 N -0.75 -38.90 5.60 -343.47 -1.92 -40.82 16 9 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 12 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 13 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 16 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 17 N -0.71 -10.57 4.53 -442.54 -2.00 -12.57 16 18 C 0.51 10.30 7.87 87.66 0.69 10.99 16 19 O -0.58 -18.32 16.16 16.00 0.26 -18.06 16 20 C 0.04 0.54 6.42 71.24 0.46 1.00 16 21 O -0.39 -7.37 9.86 -129.94 -1.28 -8.65 16 22 C 0.10 1.19 6.09 71.24 0.43 1.63 16 23 C -0.15 -2.35 5.53 -19.77 -0.11 -2.45 16 24 C -0.06 -0.77 9.86 22.47 0.22 -0.55 16 25 C -0.17 -1.94 10.11 22.36 0.23 -1.72 16 26 C 0.09 1.28 11.18 84.69 0.95 2.23 16 27 N -0.52 -10.65 10.36 -195.84 -2.03 -12.68 16 28 C 0.10 1.84 10.86 84.67 0.92 2.76 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.41 7.75 -2.39 -0.02 1.39 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.37 20.41 7.67 -92.71 -0.71 19.70 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.42 3.53 8.60 -92.71 -0.80 2.73 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 46 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 47 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 48 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 49 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -82.86 421.22 1.64 -81.22 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.58 Total: 25.66 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 6.90 Total: -3.24 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.68 Total: -125.39 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.02 Total: -26.71 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -82.86 1.64 -81.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176350293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.942 kcal (2) G-P(sol) polarization free energy of solvation -82.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds