Wall clock time and date at job start Tue Mar 31 2020 18:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47409 * 2 1 4 4 C 1.50700 * 109.47215 * 239.99832 * 2 1 3 5 5 O 1.21285 * 120.00368 * 239.99793 * 4 2 1 6 6 N 1.34779 * 120.00121 * 60.00174 * 4 2 1 7 7 C 1.47359 * 125.57134 * 359.69137 * 6 4 2 8 8 C 1.55069 * 104.67358 * 154.76459 * 7 6 4 9 9 C 1.54935 * 101.79357 * 37.39893 * 8 7 6 10 10 H 1.08997 * 112.82623 * 87.41276 * 9 8 7 11 11 C 1.53793 * 108.80917 * 214.03624 * 9 8 7 12 12 N 1.47866 * 107.12304 * 113.27712 * 11 9 8 13 13 C 1.46900 * 110.99837 * 212.90726 * 12 11 9 14 14 C 1.50700 * 109.46942 * 189.99942 * 13 12 11 15 15 O 1.21294 * 120.00199 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99899 * 179.97438 * 14 13 12 17 17 C 1.37090 * 119.99775 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00496 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99571 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99592 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47478 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46847 * 119.99817 * 21 19 17 24 24 H 1.48493 * 109.47275 * 239.99675 * 21 19 17 25 25 C 1.49837 * 106.45871 * 334.07057 * 12 11 9 26 26 C 1.46851 * 125.57832 * 179.97438 * 6 4 2 27 27 H 1.09002 * 112.02072 * 59.31001 * 26 6 4 28 28 C 1.53006 * 109.47150 * 120.00101 * 2 1 3 29 29 C 1.53000 * 117.49776 * 180.02562 * 28 2 1 30 30 C 1.52997 * 117.49537 * 248.62494 * 28 2 1 31 31 H 1.09000 * 109.47170 * 300.00100 * 1 2 3 32 32 H 1.09002 * 109.47071 * 60.00357 * 1 2 3 33 33 H 1.08998 * 109.47042 * 179.97438 * 1 2 3 34 34 H 1.09005 * 110.37888 * 273.68422 * 7 6 4 35 35 H 1.08998 * 110.37630 * 36.02939 * 7 6 4 36 36 H 1.09005 * 111.13931 * 279.21759 * 8 7 6 37 37 H 1.08994 * 110.84365 * 155.45252 * 8 7 6 38 38 H 1.09001 * 109.90895 * 232.64702 * 11 9 8 39 39 H 1.08998 * 109.90802 * 353.90850 * 11 9 8 40 40 H 1.09005 * 109.47081 * 310.00047 * 13 12 11 41 41 H 1.08999 * 109.47106 * 69.99962 * 13 12 11 42 42 H 0.96999 * 119.99412 * 0.02562 * 16 14 13 43 43 H 0.96993 * 119.99789 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.20764 * 279.76175 * 25 12 11 45 45 H 1.08996 * 111.60147 * 156.39792 * 25 12 11 46 46 H 1.09002 * 115.56020 * 34.30622 * 28 2 1 47 47 H 1.08990 * 117.49990 * 359.97438 * 29 28 2 48 48 H 1.09004 * 117.49237 * 214.97568 * 29 28 2 49 49 H 1.08999 * 117.49685 * 145.02116 * 30 28 2 50 50 H 1.08997 * 117.50044 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 0.8660 0.9280 -2.7317 8 6 1.3130 1.4079 -4.1369 9 6 1.5716 0.0640 -4.8631 10 1 0.6758 -0.3419 -5.3331 11 6 2.7426 0.2472 -5.8430 12 7 3.8623 -0.5790 -5.3427 13 6 5.1558 0.0457 -5.6503 14 6 6.2672 -0.9271 -5.3510 15 8 6.0073 -2.0323 -4.9239 16 7 7.5500 -0.5695 -5.5588 17 6 8.5609 -1.4547 -5.2870 18 1 8.3295 -2.4384 -4.9060 19 6 9.8834 -1.0858 -5.5008 20 7 10.1651 0.1113 -5.9640 21 14 11.2610 -2.2917 -5.1298 22 1 10.6835 -3.5624 -4.6228 23 1 12.0321 -2.5592 -6.3704 24 1 12.1626 -1.7123 -4.1019 25 6 3.6631 -0.7131 -3.8637 26 6 2.1272 -0.8436 -3.7303 27 1 1.7936 -1.8765 -3.8301 28 6 2.0400 -0.7213 1.2493 29 6 3.5550 -0.8276 1.4346 30 6 2.7418 0.1226 2.3151 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.1876 0.6486 -2.7409 35 1 1.0466 1.7061 -1.9901 36 1 2.2258 2.0008 -4.0778 37 1 0.5169 1.9686 -4.6266 38 1 2.4499 -0.0880 -6.8381 39 1 3.0400 1.2953 -5.8742 40 1 5.1859 0.3184 -6.7053 41 1 5.2816 0.9400 -5.0401 42 1 7.7577 0.3141 -5.9007 43 1 11.0882 0.3686 -6.1135 44 1 4.0172 0.1826 -3.3534 45 1 4.1589 -1.6007 -3.4709 46 1 1.4310 -1.5584 1.5906 47 1 4.1883 -0.3841 0.6664 48 1 3.9429 -1.7350 1.8977 49 1 2.5946 -0.1593 3.3577 50 1 2.8406 1.1916 2.1262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187455840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:01 Heat of formation + Delta-G solvation = -26.931404 kcal Electronic energy + Delta-G solvation = -30045.554916 eV Core-core repulsion = 26073.766443 eV Total energy + Delta-G solvation = -3971.788473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90798 -39.18686 -37.98690 -36.88742 -35.64253 -33.81934 -32.91412 -31.66055 -31.18274 -29.98564 -27.64961 -26.42124 -25.11188 -24.21462 -23.12463 -22.39862 -21.64008 -21.04790 -20.00565 -19.08635 -18.99278 -17.77654 -17.20962 -16.42013 -16.13150 -15.81593 -15.19954 -15.02694 -14.91186 -14.49916 -14.41937 -14.14104 -13.90892 -13.67773 -13.53041 -13.27615 -12.96355 -12.79543 -12.46048 -12.34860 -12.23205 -12.04824 -11.85218 -11.77642 -11.57230 -11.44496 -11.26720 -11.24064 -11.01026 -10.98126 -10.83170 -10.65196 -10.51385 -10.28791 -10.17679 -10.16000 -9.58480 -9.43791 -8.72311 -8.40878 -7.92350 -7.85801 -6.35577 -3.75680 2.65125 2.78399 3.21081 3.31076 3.39345 3.71743 3.97852 4.00117 4.18227 4.23461 4.33477 4.40530 4.52768 4.60041 4.70263 4.88447 4.92472 4.94794 4.96197 5.06978 5.09241 5.18447 5.26939 5.30284 5.30921 5.37030 5.43715 5.46985 5.53365 5.58934 5.60800 5.64788 5.76545 5.80848 5.81417 5.88429 5.92652 6.02125 6.04266 6.08896 6.15534 6.29444 6.33961 6.59078 7.12341 7.25878 7.47353 7.61908 8.13558 8.20343 8.69349 9.25538 9.61676 10.14479 10.82595 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003109 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.589667 B = 9003.486354 C =10787.248117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 H 0.093 0.907 4 C 0.527 3.473 5 O -0.515 6.515 6 N -0.617 5.617 7 C 0.100 3.900 8 C -0.131 4.131 9 C -0.105 4.105 10 H 0.101 0.899 11 C 0.044 3.956 12 N -0.495 5.495 13 C 0.040 3.960 14 C 0.445 3.555 15 O -0.572 6.572 16 N -0.568 5.568 17 C -0.295 4.295 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.905 5.905 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.048 3.952 26 C 0.137 3.863 27 H 0.094 0.906 28 C -0.137 4.137 29 C -0.154 4.154 30 C -0.184 4.184 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.038 0.962 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.723 8.505 8.579 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.112 0.888 4 C 0.315 3.685 5 O -0.389 6.389 6 N -0.353 5.353 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.124 4.124 10 H 0.119 0.881 11 C -0.085 4.085 12 N -0.220 5.220 13 C -0.092 4.092 14 C 0.230 3.770 15 O -0.455 6.455 16 N -0.205 5.205 17 C -0.424 4.424 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.755 3.245 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.080 4.080 26 C 0.033 3.967 27 H 0.112 0.888 28 C -0.155 4.155 29 C -0.191 4.191 30 C -0.221 4.221 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.285 6.748 8.731 24.867 hybrid contribution 0.970 1.006 0.200 1.411 sum -21.315 7.754 8.931 24.376 Atomic orbital electron populations 1.21878 0.92728 1.02940 1.02844 1.20840 0.97408 0.99745 0.91661 0.88849 1.20345 0.80281 0.84784 0.83047 1.90777 1.36667 1.25767 1.85704 1.48542 1.51712 1.29724 1.05316 1.22468 0.94774 0.87809 0.97251 1.23014 1.02423 0.96834 0.94599 1.22979 0.99026 0.95100 0.95310 0.88092 1.22887 0.90595 0.96216 0.98778 1.64517 1.00326 1.45088 1.12072 1.22032 0.89994 0.95567 1.01612 1.19720 0.83400 0.88956 0.84875 1.90533 1.83073 1.22450 1.49443 1.41856 1.04256 1.16340 1.58086 1.19753 0.84753 0.97651 1.40274 0.87900 1.25238 0.98505 0.96949 0.97353 1.69620 1.20229 1.18932 1.45866 0.85818 0.80393 0.80332 0.77934 1.19196 1.20797 1.20820 1.23667 0.94046 1.02518 0.87757 1.22467 0.95032 0.97602 0.81559 0.88835 1.21922 0.96485 1.01505 0.95624 1.22799 0.93312 1.01103 1.01872 1.23075 1.05326 0.97483 0.96192 0.91366 0.91552 0.92042 0.91005 0.90602 0.90449 0.89620 0.90093 0.93477 0.89284 0.93500 0.77618 0.92047 0.94386 0.87642 0.87575 0.88806 0.88687 0.88818 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.97 37.16 0.33 -0.70 16 2 C -0.08 -0.73 2.22 -91.77 -0.20 -0.93 16 3 H 0.09 0.80 7.59 -51.93 -0.39 0.41 16 4 C 0.53 7.13 6.88 -10.98 -0.08 7.05 16 5 O -0.52 -9.33 15.05 5.55 0.08 -9.25 16 6 N -0.62 -7.28 2.96 -161.41 -0.48 -7.76 16 7 C 0.10 0.76 5.13 -2.48 -0.01 0.75 16 8 C -0.13 -0.99 6.37 -24.62 -0.16 -1.15 16 9 C -0.10 -1.05 4.01 -87.90 -0.35 -1.40 16 10 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 11 C 0.04 0.53 6.23 -2.88 -0.02 0.51 16 12 N -0.50 -8.58 4.89 -231.04 -1.13 -9.71 16 13 C 0.04 0.74 5.22 -4.98 -0.03 0.72 16 14 C 0.45 11.03 7.61 -10.98 -0.08 10.95 16 15 O -0.57 -16.34 14.64 5.55 0.08 -16.26 16 16 N -0.57 -14.94 5.29 -10.96 -0.06 -15.00 16 17 C -0.29 -8.51 9.68 -14.94 -0.14 -8.65 16 18 H 0.10 3.14 7.16 -52.49 -0.38 2.76 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -25.21 13.05 55.50 0.72 -24.49 16 21 Si 0.93 21.75 29.55 -169.99 -5.02 16.72 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.05 0.85 5.03 -1.27 -0.01 0.85 16 26 C 0.14 1.87 3.79 -65.55 -0.25 1.62 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 28 C -0.14 -1.43 4.73 -90.62 -0.43 -1.86 16 29 C -0.15 -1.85 8.97 -26.75 -0.24 -2.09 16 30 C -0.18 -1.66 10.17 -26.75 -0.27 -1.94 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.38 4.99 -51.93 -0.26 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.43 7.14 -51.93 -0.37 0.06 16 35 H 0.08 0.47 7.25 -51.93 -0.38 0.10 16 36 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.52 6.95 -51.93 -0.36 0.16 16 40 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 41 H 0.05 0.81 7.86 -51.93 -0.41 0.40 16 42 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.04 0.68 7.77 -51.93 -0.40 0.28 16 45 H 0.11 2.38 7.17 -51.93 -0.37 2.01 16 46 H 0.11 1.09 8.11 -51.93 -0.42 0.67 16 47 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 LS Contribution 392.36 15.07 5.91 5.91 Total: -1.00 -34.87 392.36 -10.15 -45.02 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -8.23 Total: 10.60 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -2.03 Total: 4.20 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.94 Total: -56.94 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.16 Total: -25.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.87 -10.15 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187455840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.091 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds