Wall clock time and date at job start Tue Mar 31 2020 18:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47409 * 2 1 4 4 C 1.50700 * 109.47215 * 239.99832 * 2 1 3 5 5 O 1.21285 * 120.00368 * 239.99793 * 4 2 1 6 6 N 1.34779 * 120.00121 * 60.00174 * 4 2 1 7 7 C 1.47359 * 125.57134 * 359.69137 * 6 4 2 8 8 C 1.55069 * 104.67358 * 154.76459 * 7 6 4 9 9 C 1.54935 * 101.79357 * 37.39893 * 8 7 6 10 10 H 1.08997 * 112.82623 * 87.41276 * 9 8 7 11 11 C 1.53793 * 108.80917 * 214.03624 * 9 8 7 12 12 N 1.47866 * 107.12304 * 113.27712 * 11 9 8 13 13 C 1.46900 * 110.99837 * 212.90726 * 12 11 9 14 14 C 1.50700 * 109.46942 * 189.99942 * 13 12 11 15 15 O 1.21294 * 120.00199 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99899 * 179.97438 * 14 13 12 17 17 C 1.37090 * 119.99775 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00496 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99571 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00351 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99592 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47478 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46847 * 119.99817 * 21 19 17 24 24 H 1.48493 * 109.47275 * 239.99675 * 21 19 17 25 25 C 1.49837 * 106.45871 * 334.07057 * 12 11 9 26 26 C 1.46851 * 125.57832 * 179.97438 * 6 4 2 27 27 H 1.09002 * 112.02072 * 59.31001 * 26 6 4 28 28 C 1.53006 * 109.47150 * 120.00101 * 2 1 3 29 29 C 1.53000 * 117.49776 * 180.02562 * 28 2 1 30 30 C 1.52997 * 117.49537 * 248.62494 * 28 2 1 31 31 H 1.09000 * 109.47170 * 300.00100 * 1 2 3 32 32 H 1.09002 * 109.47071 * 60.00357 * 1 2 3 33 33 H 1.08998 * 109.47042 * 179.97438 * 1 2 3 34 34 H 1.09005 * 110.37888 * 273.68422 * 7 6 4 35 35 H 1.08998 * 110.37630 * 36.02939 * 7 6 4 36 36 H 1.09005 * 111.13931 * 279.21759 * 8 7 6 37 37 H 1.08994 * 110.84365 * 155.45252 * 8 7 6 38 38 H 1.09001 * 109.90895 * 232.64702 * 11 9 8 39 39 H 1.08998 * 109.90802 * 353.90850 * 11 9 8 40 40 H 1.09005 * 109.47081 * 310.00047 * 13 12 11 41 41 H 1.08999 * 109.47106 * 69.99962 * 13 12 11 42 42 H 0.96999 * 119.99412 * 0.02562 * 16 14 13 43 43 H 0.96993 * 119.99789 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.20764 * 279.76175 * 25 12 11 45 45 H 1.08996 * 111.60147 * 156.39792 * 25 12 11 46 46 H 1.09002 * 115.56020 * 34.30622 * 28 2 1 47 47 H 1.08990 * 117.49990 * 359.97438 * 29 28 2 48 48 H 1.09004 * 117.49237 * 214.97568 * 29 28 2 49 49 H 1.08999 * 117.49685 * 145.02116 * 30 28 2 50 50 H 1.08997 * 117.50044 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 0.8660 0.9280 -2.7317 8 6 1.3130 1.4079 -4.1369 9 6 1.5716 0.0640 -4.8631 10 1 0.6758 -0.3419 -5.3331 11 6 2.7426 0.2472 -5.8430 12 7 3.8623 -0.5790 -5.3427 13 6 5.1558 0.0457 -5.6503 14 6 6.2672 -0.9271 -5.3510 15 8 6.0073 -2.0323 -4.9239 16 7 7.5500 -0.5695 -5.5588 17 6 8.5609 -1.4547 -5.2870 18 1 8.3295 -2.4384 -4.9060 19 6 9.8834 -1.0858 -5.5008 20 7 10.1651 0.1113 -5.9640 21 14 11.2610 -2.2917 -5.1298 22 1 10.6835 -3.5624 -4.6228 23 1 12.0321 -2.5592 -6.3704 24 1 12.1626 -1.7123 -4.1019 25 6 3.6631 -0.7131 -3.8637 26 6 2.1272 -0.8436 -3.7303 27 1 1.7936 -1.8765 -3.8301 28 6 2.0400 -0.7213 1.2493 29 6 3.5550 -0.8276 1.4346 30 6 2.7418 0.1226 2.3151 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.1876 0.6486 -2.7409 35 1 1.0466 1.7061 -1.9901 36 1 2.2258 2.0008 -4.0778 37 1 0.5169 1.9686 -4.6266 38 1 2.4499 -0.0880 -6.8381 39 1 3.0400 1.2953 -5.8742 40 1 5.1859 0.3184 -6.7053 41 1 5.2816 0.9400 -5.0401 42 1 7.7577 0.3141 -5.9007 43 1 11.0882 0.3686 -6.1135 44 1 4.0172 0.1826 -3.3534 45 1 4.1589 -1.6007 -3.4709 46 1 1.4310 -1.5584 1.5906 47 1 4.1883 -0.3841 0.6664 48 1 3.9429 -1.7350 1.8977 49 1 2.5946 -0.1593 3.3577 50 1 2.8406 1.1916 2.1262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187455840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:00 Heat of formation + Delta-G solvation = -52.593706 kcal Electronic energy + Delta-G solvation = -30046.667717 eV Core-core repulsion = 26073.766443 eV Total energy + Delta-G solvation = -3972.901274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.90235 -40.45707 -39.66122 -37.88023 -36.86412 -35.91183 -33.84774 -33.30203 -32.52801 -31.15953 -28.73926 -27.97714 -26.07258 -25.83502 -23.98086 -23.27018 -22.64672 -22.11870 -21.09920 -20.77999 -20.01525 -19.86910 -18.20518 -17.73895 -17.30537 -17.06153 -16.64187 -16.36911 -16.09361 -15.94444 -15.66253 -15.53074 -15.12394 -15.02650 -14.66023 -14.34150 -14.23945 -13.88012 -13.68246 -13.53137 -13.22325 -13.18457 -13.02707 -12.97317 -12.89982 -12.64408 -12.50514 -12.45071 -12.39861 -12.16448 -12.03332 -11.82557 -11.77440 -11.61537 -11.52755 -11.39523 -11.01217 -10.60495 -10.36592 -10.04437 -9.73317 -9.29113 -8.50555 -5.99197 1.32436 1.37021 1.51866 1.64031 1.86212 2.01640 2.25708 2.77848 2.89058 3.14958 3.28280 3.36015 3.52728 3.58488 3.66336 3.78014 3.88300 4.06440 4.11741 4.14304 4.19131 4.23266 4.30037 4.34357 4.37912 4.41220 4.46910 4.54379 4.58600 4.68396 4.71213 4.76459 4.87360 4.89865 4.93556 5.01258 5.02914 5.08080 5.12852 5.18213 5.20880 5.26372 5.34624 5.36819 5.41249 5.74818 5.90790 6.08038 6.54657 6.57564 7.09813 7.20339 7.52122 8.09982 8.67304 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003109 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.589667 B = 9003.486354 C =10787.248117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 H 0.112 0.888 4 C 0.515 3.485 5 O -0.579 6.579 6 N -0.615 5.615 7 C 0.092 3.908 8 C -0.121 4.121 9 C -0.090 4.090 10 H 0.130 0.870 11 C 0.042 3.958 12 N -0.521 5.521 13 C 0.054 3.946 14 C 0.437 3.563 15 O -0.619 6.619 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.278 1.278 23 H -0.266 1.266 24 H -0.268 1.268 25 C 0.058 3.942 26 C 0.136 3.864 27 H 0.068 0.932 28 C -0.141 4.141 29 C -0.189 4.189 30 C -0.150 4.150 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.065 0.935 42 H 0.397 0.603 43 H 0.279 0.721 44 H 0.029 0.971 45 H 0.038 0.962 46 H 0.105 0.895 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.112 0.888 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.408 11.843 8.277 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 H 0.130 0.870 4 C 0.305 3.695 5 O -0.458 6.458 6 N -0.349 5.349 7 C -0.028 4.028 8 C -0.159 4.159 9 C -0.109 4.109 10 H 0.148 0.852 11 C -0.085 4.085 12 N -0.246 5.246 13 C -0.078 4.078 14 C 0.224 3.776 15 O -0.505 6.505 16 N -0.212 5.212 17 C -0.464 4.464 18 H 0.090 0.910 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.203 1.203 23 H -0.191 1.191 24 H -0.194 1.194 25 C -0.071 4.071 26 C 0.031 3.969 27 H 0.086 0.914 28 C -0.159 4.159 29 C -0.227 4.227 30 C -0.186 4.186 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.136 0.864 41 H 0.083 0.917 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.123 0.877 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.130 0.870 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.009 10.167 8.397 28.272 hybrid contribution 1.833 -0.074 0.269 1.855 sum -23.176 10.093 8.666 26.722 Atomic orbital electron populations 1.21882 0.89973 1.02875 1.04931 1.20901 0.99455 0.99609 0.88898 0.87036 1.21235 0.79347 0.84262 0.84635 1.90755 1.39521 1.28792 1.86732 1.48663 1.51511 1.30653 1.04101 1.22875 0.95410 0.86482 0.98075 1.23054 1.03450 0.95269 0.94116 1.23031 0.98867 0.95802 0.93196 0.85239 1.23073 0.89185 0.96563 0.99711 1.64390 1.01252 1.47362 1.11628 1.21893 0.88459 0.93907 1.03504 1.20909 0.84243 0.89423 0.83000 1.90510 1.83891 1.25022 1.51077 1.41907 1.04612 1.16220 1.58491 1.19647 0.86481 0.97486 1.42773 0.90968 1.26010 0.99974 0.98730 0.96364 1.69666 1.21324 1.19758 1.45240 0.84902 0.77405 0.77685 0.78512 1.20296 1.19074 1.19352 1.23312 0.96758 0.98859 0.88145 1.22309 0.92222 0.97894 0.84481 0.91406 1.22053 0.94813 1.02212 0.96834 1.22677 0.94595 1.02192 1.03195 1.23159 1.01470 0.97602 0.96395 0.89074 0.89601 0.93217 0.88073 0.88421 0.91400 0.85582 0.88650 0.91314 0.86396 0.91687 0.76955 0.91195 0.95281 0.94363 0.87693 0.91737 0.89902 0.87005 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.97 71.98 0.65 -0.88 16 2 C -0.07 -1.23 2.22 -11.54 -0.03 -1.26 16 3 H 0.11 1.63 7.59 -2.39 -0.02 1.61 16 4 C 0.52 14.47 6.88 87.66 0.60 15.07 16 5 O -0.58 -23.29 15.05 -3.05 -0.05 -23.33 16 6 N -0.62 -14.16 2.96 -782.96 -2.32 -16.48 16 7 C 0.09 1.02 5.13 86.92 0.45 1.47 16 8 C -0.12 -1.26 6.37 31.96 0.20 -1.06 16 9 C -0.09 -1.53 4.01 -9.03 -0.04 -1.57 16 10 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 11 C 0.04 0.91 6.23 86.38 0.54 1.44 16 12 N -0.52 -18.34 4.89 -884.86 -4.33 -22.67 16 13 C 0.05 2.02 5.22 85.56 0.45 2.47 16 14 C 0.44 22.83 7.61 87.66 0.67 23.49 16 15 O -0.62 -38.25 14.64 -3.07 -0.04 -38.29 16 16 N -0.57 -31.56 5.29 -306.98 -1.62 -33.18 16 17 C -0.33 -20.26 9.68 84.04 0.81 -19.44 16 18 H 0.07 4.74 7.16 -2.91 -0.02 4.72 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -51.23 13.05 21.66 0.28 -50.95 16 21 Si 0.99 45.23 29.55 68.60 2.03 47.25 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 25 C 0.06 2.20 5.03 86.32 0.43 2.64 16 26 C 0.14 3.79 3.79 46.34 0.18 3.96 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 C -0.14 -2.94 4.73 -10.79 -0.05 -2.99 16 29 C -0.19 -4.97 8.97 30.58 0.27 -4.69 16 30 C -0.15 -2.52 10.17 30.58 0.31 -2.21 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.60 4.99 -2.39 -0.01 0.59 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.62 7.14 -2.38 -0.02 0.61 16 35 H 0.10 0.73 7.25 -2.39 -0.02 0.71 16 36 H 0.07 0.89 7.53 -2.38 -0.02 0.87 16 37 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.24 6.95 -2.39 -0.02 1.22 16 40 H 0.12 3.73 8.08 -2.38 -0.02 3.71 16 41 H 0.07 2.21 7.86 -2.39 -0.02 2.19 16 42 H 0.40 20.39 7.90 -92.71 -0.73 19.65 16 43 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.03 1.11 7.77 -2.39 -0.02 1.09 16 45 H 0.04 1.95 7.17 -2.39 -0.02 1.93 16 46 H 0.10 2.18 8.11 -2.39 -0.02 2.16 16 47 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 48 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 50 H 0.11 1.48 8.05 -2.39 -0.02 1.46 16 Total: -1.00 -86.25 392.36 0.07 -86.18 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: 0.21 Total: 35.16 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.91 Total: 16.30 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -7.99 Total: -123.28 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -0.09 Total: -61.62 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -86.25 0.07 -86.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187455840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.590 kcal (2) G-P(sol) polarization free energy of solvation -86.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds