Wall clock time and date at job start Tue Mar 31 2020 19:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46613 * 2 1 4 4 C 1.52999 * 109.47074 * 120.00068 * 2 1 3 5 5 C 1.50697 * 109.47125 * 295.00144 * 4 2 1 6 6 O 1.21285 * 120.00121 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00019 * 180.02562 * 5 4 2 8 8 C 1.47503 * 118.75848 * 0.02562 * 7 5 4 9 9 C 1.53573 * 111.03106 * 221.62609 * 8 7 5 10 10 C 1.51534 * 109.58000 * 39.97757 * 9 8 7 11 11 O 1.42158 * 108.76478 * 268.60478 * 10 9 8 12 12 C 1.38013 * 119.44261 * 87.21486 * 11 10 9 13 13 H 1.09006 * 109.46188 * 56.58118 * 12 11 10 14 14 C 1.52992 * 109.47331 * 176.57427 * 12 11 10 15 15 N 1.46498 * 109.47364 * 300.00645 * 14 12 11 16 16 C 1.36935 * 120.00239 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72253 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72375 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72186 * 20 18 16 24 24 C 1.45128 * 118.76018 * 179.97438 * 7 5 4 25 25 N 1.46504 * 109.46850 * 240.00337 * 2 1 3 26 26 C 1.36338 * 125.63379 * 299.68796 * 25 2 1 27 27 C 1.34850 * 108.21718 * 179.83828 * 26 25 2 28 28 C 1.40893 * 107.41540 * 0.42300 * 27 26 25 29 29 C 1.34853 * 107.41930 * 359.73795 * 28 27 26 30 30 H 1.09008 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47315 * 299.99479 * 1 2 3 32 32 H 1.08997 * 109.46985 * 60.00374 * 1 2 3 33 33 H 1.08998 * 109.47037 * 174.99813 * 4 2 1 34 34 H 1.09000 * 109.47130 * 54.99892 * 4 2 1 35 35 H 1.09000 * 109.17026 * 101.22810 * 8 7 5 36 36 H 1.09005 * 109.12501 * 341.99865 * 8 7 5 37 37 H 1.08996 * 109.45317 * 279.94702 * 9 8 7 38 38 H 1.08998 * 109.43830 * 159.99622 * 9 8 7 39 39 H 1.08997 * 109.59307 * 148.82034 * 10 9 8 40 40 H 1.09005 * 109.59141 * 28.38382 * 10 9 8 41 41 H 1.09001 * 109.47602 * 180.02562 * 14 12 11 42 42 H 1.09001 * 109.46922 * 60.00663 * 14 12 11 43 43 H 0.97004 * 119.99747 * 0.02562 * 15 14 12 44 44 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 45 45 H 1.09004 * 109.45500 * 330.69024 * 24 7 5 46 46 H 1.09003 * 109.46183 * 210.73181 * 24 7 5 47 47 H 1.07997 * 125.89531 * 359.96286 * 26 25 2 48 48 H 1.07998 * 126.29447 * 180.16625 * 27 26 25 49 49 H 1.08002 * 126.29208 * 179.73684 * 28 27 26 50 50 H 1.07995 * 125.89573 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0869 2.3633 7 7 1.9853 -0.3914 3.7001 8 6 2.7525 -1.6468 3.8060 9 6 2.2321 -2.5150 4.9609 10 6 0.7187 -2.4507 5.0025 11 8 0.3296 -1.3921 5.8678 12 6 0.2069 -0.1135 5.3630 13 1 -0.4998 -0.1170 4.5330 14 6 -0.3015 0.8221 6.4616 15 7 -1.6076 0.3561 6.9341 16 6 -2.2620 1.0405 7.9233 17 1 -1.8154 1.9241 8.3549 18 6 -3.4993 0.5988 8.3713 19 7 -4.0460 -0.4750 7.8415 20 14 -4.3923 1.5328 9.7202 21 1 -5.6866 0.8654 10.0111 22 1 -3.5566 1.5488 10.9478 23 1 -4.6434 2.9268 9.2741 24 6 1.5879 0.3796 4.8636 25 7 2.0183 -0.6906 -1.1963 26 6 1.7656 -1.9901 -1.5220 27 6 2.3800 -2.2586 -2.6920 28 6 3.0441 -1.0845 -3.0987 29 6 2.8055 -0.1415 -2.1647 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.8023 -1.4110 3.9805 36 1 2.6609 -2.2012 2.8720 37 1 2.6371 -2.1463 5.9033 38 1 2.5474 -3.5473 4.8093 39 1 0.3229 -3.3941 5.3785 40 1 0.3331 -2.2637 4.0002 41 1 -0.3989 1.8318 6.0628 42 1 0.4050 0.8255 7.2916 43 1 -2.0085 -0.4377 6.5467 44 1 -3.5825 -0.9598 7.1408 45 1 1.5227 1.4341 4.5954 46 1 2.3272 0.2512 5.6542 47 1 1.1737 -2.6842 -0.9439 48 1 2.3688 -3.2016 -3.2183 49 1 3.6356 -0.9621 -3.9940 50 1 3.1746 0.8733 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201891250.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:44 Heat of formation + Delta-G solvation = -5.408834 kcal Electronic energy + Delta-G solvation = -29867.212066 eV Core-core repulsion = 25896.356882 eV Total energy + Delta-G solvation = -3970.855184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58128 -40.72625 -38.80335 -35.92814 -35.39345 -34.81034 -33.07956 -30.96364 -30.43547 -29.25651 -28.92268 -27.85463 -26.68650 -24.90271 -23.27474 -22.48648 -21.88269 -21.11898 -20.72007 -19.91074 -19.03918 -18.13856 -17.33540 -16.98131 -16.70117 -16.50876 -16.13195 -15.47468 -15.14203 -14.86771 -14.52560 -14.16438 -14.04016 -13.84062 -13.66059 -13.62394 -13.29097 -13.15308 -12.95219 -12.77027 -12.62134 -12.49886 -12.30136 -12.20964 -11.99610 -11.82549 -11.67677 -11.54315 -11.37432 -11.09544 -10.68653 -10.53887 -10.38771 -10.03112 -9.94053 -9.55807 -9.16802 -8.84947 -8.84164 -8.71149 -8.37711 -6.93397 -6.04378 -3.02759 2.04892 2.26541 2.44648 2.85382 2.87234 3.54937 3.59203 3.76386 3.81466 4.07889 4.12972 4.33476 4.44739 4.56025 4.70418 4.73367 4.78601 4.81567 4.97194 5.00107 5.06901 5.10488 5.17467 5.20135 5.31087 5.31815 5.36648 5.39873 5.46417 5.53105 5.60650 5.66467 5.70207 5.81225 5.85466 5.96271 5.96477 6.07472 6.11156 6.11866 6.32047 6.55288 6.67325 6.78232 6.98676 7.03859 7.15871 7.83140 7.84372 7.88507 8.82786 9.30116 10.16690 10.32465 11.44572 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002430 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.340731 B =11519.573574 C =12087.678416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.106 0.894 4 C -0.151 4.151 5 C 0.512 3.488 6 O -0.528 6.528 7 N -0.607 5.607 8 C 0.104 3.896 9 C -0.167 4.167 10 C 0.073 3.927 11 O -0.369 6.369 12 C 0.089 3.911 13 H 0.050 0.950 14 C 0.172 3.828 15 N -0.736 5.736 16 C -0.330 4.330 17 H 0.064 0.936 18 C -0.047 4.047 19 N -0.944 5.944 20 Si 1.081 2.919 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.081 3.919 25 N -0.442 5.442 26 C -0.015 4.015 27 C -0.204 4.204 28 C -0.205 4.205 29 C -0.015 4.015 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.027 0.973 43 H 0.370 0.630 44 H 0.255 0.745 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.157 0.843 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.936 -4.983 -18.214 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.124 0.876 4 C -0.191 4.191 5 C 0.299 3.701 6 O -0.405 6.405 7 N -0.340 5.340 8 C -0.019 4.019 9 C -0.205 4.205 10 C -0.004 4.004 11 O -0.287 6.287 12 C 0.029 3.971 13 H 0.068 0.932 14 C 0.044 3.956 15 N -0.382 5.382 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.244 4.244 19 N -0.590 5.590 20 Si 0.912 3.088 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.043 4.043 25 N -0.118 5.118 26 C -0.144 4.144 27 C -0.228 4.228 28 C -0.229 4.229 29 C -0.145 4.145 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.174 0.826 48 H 0.150 0.850 49 H 0.150 0.850 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 17.168 -4.036 -16.727 24.307 hybrid contribution 1.628 -0.389 -1.399 2.182 sum 18.796 -4.425 -18.126 26.485 Atomic orbital electron populations 1.22300 0.92530 1.02984 1.04710 1.21116 0.96229 0.96567 0.81440 0.87555 1.22065 1.03635 1.00848 0.92589 1.20375 0.79462 0.85748 0.84503 1.90731 1.39169 1.24409 1.86158 1.47935 1.55314 1.24499 1.06206 1.22046 0.95273 0.84388 1.00171 1.22508 0.98263 1.00353 0.99407 1.22127 0.92750 0.91073 0.94402 1.86445 1.88031 1.15546 1.38657 1.22300 0.93901 0.83516 0.97417 0.93238 1.20546 0.88667 0.93520 0.92909 1.42198 1.17896 1.32632 1.45491 1.20028 1.03002 1.08870 1.14163 0.91803 1.25780 0.95203 0.99580 1.03848 1.70858 1.40483 1.18868 1.28809 0.83230 0.76129 0.74518 0.74920 1.21060 1.22297 1.22296 1.22463 0.97728 0.97132 0.86935 1.44368 1.39212 1.10111 1.18117 1.21739 1.06777 0.86181 0.99743 1.20886 1.04765 0.99371 0.97812 1.20884 1.06891 0.93995 1.01167 1.21861 1.01178 0.99781 0.91661 0.92287 0.88512 0.91773 0.88155 0.88134 0.91210 0.89952 0.89795 0.89505 0.89165 0.93650 0.94712 0.95527 0.79640 0.93368 0.88688 0.89730 0.82602 0.84963 0.84956 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 8.98 37.16 0.33 -1.34 16 2 C 0.15 1.33 2.67 -67.93 -0.18 1.15 16 3 H 0.11 1.00 7.88 -51.93 -0.41 0.59 16 4 C -0.15 -1.21 3.49 -27.88 -0.10 -1.31 16 5 C 0.51 5.82 7.35 -10.99 -0.08 5.74 16 6 O -0.53 -7.86 13.39 5.55 0.07 -7.79 16 7 N -0.61 -6.61 2.19 -172.40 -0.38 -6.99 16 8 C 0.10 0.79 6.00 -3.20 -0.02 0.77 16 9 C -0.17 -1.45 5.79 -27.18 -0.16 -1.61 16 10 C 0.07 0.90 6.37 36.42 0.23 1.13 16 11 O -0.37 -6.32 9.18 -26.53 -0.24 -6.56 16 12 C 0.09 1.53 2.74 -25.73 -0.07 1.46 16 13 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 14 C 0.17 3.65 5.95 -4.05 -0.02 3.63 16 15 N -0.74 -19.64 5.49 -59.91 -0.33 -19.97 16 16 C -0.33 -9.69 9.99 -15.06 -0.15 -9.84 16 17 H 0.06 1.83 7.83 -52.48 -0.41 1.42 16 18 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16 19 N -0.94 -30.17 13.70 55.49 0.76 -29.41 16 20 Si 1.08 26.62 29.92 -169.99 -5.09 21.53 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.08 1.09 4.87 -3.77 -0.02 1.07 16 25 N -0.44 -4.02 2.62 -110.02 -0.29 -4.30 16 26 C -0.01 -0.13 10.45 -16.75 -0.18 -0.31 16 27 C -0.20 -1.90 10.86 -39.78 -0.43 -2.33 16 28 C -0.20 -1.91 10.86 -39.78 -0.43 -2.34 16 29 C -0.02 -0.14 11.39 -16.75 -0.19 -0.33 16 30 H 0.06 0.55 7.92 -51.92 -0.41 0.13 16 31 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.10 0.69 7.32 -51.93 -0.38 0.31 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.47 5.87 -51.93 -0.31 0.16 16 37 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.55 7.40 -51.93 -0.38 0.16 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.37 10.23 6.36 -40.82 -0.26 9.97 16 44 H 0.26 8.09 6.77 -40.82 -0.28 7.81 16 45 H 0.09 1.36 7.27 -51.93 -0.38 0.99 16 46 H 0.08 1.05 8.11 -51.93 -0.42 0.62 16 47 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 48 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -35.65 395.04 -9.32 -44.97 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.22 Total: 8.51 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.56 Total: -5.95 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.23 Total: -60.67 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.17 Total: -14.35 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -5.09 Total: 21.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.65 -9.32 -44.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201891250.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.562 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds