Wall clock time and date at job start Tue Mar 31 2020 19:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46613 * 2 1 4 4 C 1.52999 * 109.47074 * 120.00068 * 2 1 3 5 5 C 1.50697 * 109.47125 * 295.00144 * 4 2 1 6 6 O 1.21285 * 120.00121 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00019 * 180.02562 * 5 4 2 8 8 C 1.47503 * 118.75848 * 0.02562 * 7 5 4 9 9 C 1.53573 * 111.03106 * 221.62609 * 8 7 5 10 10 C 1.51534 * 109.58000 * 39.97757 * 9 8 7 11 11 O 1.42158 * 108.76478 * 268.60478 * 10 9 8 12 12 C 1.38013 * 119.44261 * 87.21486 * 11 10 9 13 13 H 1.09006 * 109.46188 * 56.58118 * 12 11 10 14 14 C 1.52992 * 109.47331 * 176.57427 * 12 11 10 15 15 N 1.46498 * 109.47364 * 300.00645 * 14 12 11 16 16 C 1.36935 * 120.00239 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72253 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72375 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72186 * 20 18 16 24 24 C 1.45128 * 118.76018 * 179.97438 * 7 5 4 25 25 N 1.46504 * 109.46850 * 240.00337 * 2 1 3 26 26 C 1.36338 * 125.63379 * 299.68796 * 25 2 1 27 27 C 1.34850 * 108.21718 * 179.83828 * 26 25 2 28 28 C 1.40893 * 107.41540 * 0.42300 * 27 26 25 29 29 C 1.34853 * 107.41930 * 359.73795 * 28 27 26 30 30 H 1.09008 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47315 * 299.99479 * 1 2 3 32 32 H 1.08997 * 109.46985 * 60.00374 * 1 2 3 33 33 H 1.08998 * 109.47037 * 174.99813 * 4 2 1 34 34 H 1.09000 * 109.47130 * 54.99892 * 4 2 1 35 35 H 1.09000 * 109.17026 * 101.22810 * 8 7 5 36 36 H 1.09005 * 109.12501 * 341.99865 * 8 7 5 37 37 H 1.08996 * 109.45317 * 279.94702 * 9 8 7 38 38 H 1.08998 * 109.43830 * 159.99622 * 9 8 7 39 39 H 1.08997 * 109.59307 * 148.82034 * 10 9 8 40 40 H 1.09005 * 109.59141 * 28.38382 * 10 9 8 41 41 H 1.09001 * 109.47602 * 180.02562 * 14 12 11 42 42 H 1.09001 * 109.46922 * 60.00663 * 14 12 11 43 43 H 0.97004 * 119.99747 * 0.02562 * 15 14 12 44 44 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 45 45 H 1.09004 * 109.45500 * 330.69024 * 24 7 5 46 46 H 1.09003 * 109.46183 * 210.73181 * 24 7 5 47 47 H 1.07997 * 125.89531 * 359.96286 * 26 25 2 48 48 H 1.07998 * 126.29447 * 180.16625 * 27 26 25 49 49 H 1.08002 * 126.29208 * 179.73684 * 28 27 26 50 50 H 1.07995 * 125.89573 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0109 1.0869 2.3633 7 7 1.9853 -0.3914 3.7001 8 6 2.7525 -1.6468 3.8060 9 6 2.2321 -2.5150 4.9609 10 6 0.7187 -2.4507 5.0025 11 8 0.3296 -1.3921 5.8678 12 6 0.2069 -0.1135 5.3630 13 1 -0.4998 -0.1170 4.5330 14 6 -0.3015 0.8221 6.4616 15 7 -1.6076 0.3561 6.9341 16 6 -2.2620 1.0405 7.9233 17 1 -1.8154 1.9241 8.3549 18 6 -3.4993 0.5988 8.3713 19 7 -4.0460 -0.4750 7.8415 20 14 -4.3923 1.5328 9.7202 21 1 -5.6866 0.8654 10.0111 22 1 -3.5566 1.5488 10.9478 23 1 -4.6434 2.9268 9.2741 24 6 1.5879 0.3796 4.8636 25 7 2.0183 -0.6906 -1.1963 26 6 1.7656 -1.9901 -1.5220 27 6 2.3800 -2.2586 -2.6920 28 6 3.0441 -1.0845 -3.0987 29 6 2.8055 -0.1415 -2.1647 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.8023 -1.4110 3.9805 36 1 2.6609 -2.2012 2.8720 37 1 2.6371 -2.1463 5.9033 38 1 2.5474 -3.5473 4.8093 39 1 0.3229 -3.3941 5.3785 40 1 0.3331 -2.2637 4.0002 41 1 -0.3989 1.8318 6.0628 42 1 0.4050 0.8255 7.2916 43 1 -2.0085 -0.4377 6.5467 44 1 -3.5825 -0.9598 7.1408 45 1 1.5227 1.4341 4.5954 46 1 2.3272 0.2512 5.6542 47 1 1.1737 -2.6842 -0.9439 48 1 2.3688 -3.2016 -3.2183 49 1 3.6356 -0.9621 -3.9940 50 1 3.1746 0.8733 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201891250.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:43 Heat of formation + Delta-G solvation = -27.318876 kcal Electronic energy + Delta-G solvation = -29868.162157 eV Core-core repulsion = 25896.356882 eV Total energy + Delta-G solvation = -3971.805275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29839 -41.64388 -39.91729 -37.17269 -36.51625 -36.08441 -34.46623 -32.61168 -31.31967 -30.25400 -29.60464 -29.00966 -27.61309 -26.42574 -24.85067 -23.68387 -22.84865 -22.40013 -21.39021 -20.62491 -19.85643 -19.42431 -18.89774 -18.01822 -17.73617 -17.65129 -17.10554 -16.74829 -16.16180 -15.77852 -15.63285 -15.60386 -15.25309 -14.98100 -14.93030 -14.64031 -14.39514 -14.16591 -14.06339 -13.73586 -13.63156 -13.40510 -13.13667 -12.99782 -12.93853 -12.83816 -12.67691 -12.59859 -12.49235 -12.33094 -12.24128 -12.01938 -11.88597 -11.60184 -11.31515 -10.99140 -10.95399 -10.65284 -9.74507 -9.52896 -9.15115 -9.03819 -8.43364 -5.36359 1.37749 1.40223 1.56745 1.66273 1.68035 1.84355 2.12783 2.18351 2.62005 2.70260 3.34587 3.37943 3.41745 3.50515 3.66807 3.77199 3.89253 3.97361 3.98838 4.05588 4.16132 4.20168 4.21226 4.35391 4.38269 4.40768 4.41157 4.43019 4.59864 4.63663 4.65688 4.70519 4.76500 4.78699 4.82522 4.89050 4.98164 5.05013 5.09221 5.14904 5.41796 5.43365 5.46578 5.53351 6.12540 6.15504 6.37193 6.45505 6.50224 6.65131 6.98342 7.05797 7.95790 8.08288 9.08489 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.002430 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.340731 B =11519.573574 C =12087.678416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.100 0.900 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.570 6.570 7 N -0.606 5.606 8 C 0.099 3.901 9 C -0.157 4.157 10 C 0.064 3.936 11 O -0.400 6.400 12 C 0.106 3.894 13 H 0.022 0.978 14 C 0.167 3.833 15 N -0.751 5.751 16 C -0.337 4.337 17 H 0.068 0.932 18 C -0.107 4.107 19 N -0.973 5.973 20 Si 1.132 2.868 21 H -0.291 1.291 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.095 3.905 25 N -0.443 5.443 26 C -0.020 4.020 27 C -0.220 4.220 28 C -0.219 4.219 29 C -0.027 4.027 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.046 0.954 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.361 0.639 44 H 0.242 0.758 45 H 0.082 0.918 46 H 0.100 0.900 47 H 0.174 0.826 48 H 0.143 0.857 49 H 0.143 0.857 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.110 -5.842 -18.640 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.118 0.882 4 C -0.178 4.178 5 C 0.297 3.703 6 O -0.450 6.450 7 N -0.338 5.338 8 C -0.021 4.021 9 C -0.195 4.195 10 C -0.012 4.012 11 O -0.319 6.319 12 C 0.046 3.954 13 H 0.040 0.960 14 C 0.040 3.960 15 N -0.395 5.395 16 C -0.468 4.468 17 H 0.086 0.914 18 C -0.298 4.298 19 N -0.621 5.621 20 Si 0.956 3.044 21 H -0.217 1.217 22 H -0.201 1.201 23 H -0.203 1.203 24 C -0.029 4.029 25 N -0.119 5.119 26 C -0.150 4.150 27 C -0.244 4.244 28 C -0.243 4.243 29 C -0.156 4.156 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.193 0.807 44 H 0.052 0.948 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.192 0.808 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 19.419 -4.909 -17.182 26.390 hybrid contribution 0.986 -0.164 -1.330 1.664 sum 20.405 -5.074 -18.512 28.014 Atomic orbital electron populations 1.22206 0.93671 1.03003 1.03189 1.20976 0.95231 0.96570 0.82060 0.88221 1.22014 1.05036 1.00736 0.89989 1.20978 0.78512 0.85395 0.85427 1.90725 1.41009 1.26477 1.86781 1.48022 1.55225 1.25391 1.05173 1.22364 0.95810 0.82820 1.01133 1.22431 0.94980 1.02656 0.99453 1.22428 0.95656 0.89484 0.93640 1.86362 1.88827 1.16095 1.40595 1.21887 0.95435 0.83523 0.94579 0.95996 1.20693 0.86541 0.94534 0.94217 1.42411 1.19681 1.32240 1.45206 1.20432 1.03279 1.08881 1.14254 0.91366 1.27371 0.96553 0.99877 1.05970 1.70981 1.41071 1.20374 1.29693 0.82593 0.74863 0.73990 0.72969 1.21702 1.20091 1.20291 1.22097 0.95704 0.96703 0.88420 1.44358 1.39272 1.10221 1.18040 1.22084 1.06699 0.86290 0.99911 1.21166 1.05031 0.99946 0.98262 1.21160 1.07220 0.94235 1.01715 1.22207 1.01223 1.00571 0.91627 0.91473 0.91062 0.92209 0.85817 0.86151 0.88802 0.87104 0.90877 0.86078 0.88799 0.93603 0.94933 0.95243 0.80747 0.94816 0.89934 0.88178 0.80841 0.83930 0.83960 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 8.98 71.98 0.65 -2.57 16 2 C 0.15 2.54 2.67 44.99 0.12 2.66 16 3 H 0.10 1.80 7.88 -2.39 -0.02 1.78 16 4 C -0.14 -1.83 3.49 29.85 0.10 -1.73 16 5 C 0.51 10.89 7.35 87.66 0.64 11.54 16 6 O -0.57 -17.24 13.39 -3.04 -0.04 -17.28 16 7 N -0.61 -12.07 2.19 -817.74 -1.79 -13.86 16 8 C 0.10 1.13 6.00 86.38 0.52 1.65 16 9 C -0.16 -2.23 5.79 30.31 0.18 -2.06 16 10 C 0.06 1.48 6.37 71.50 0.46 1.94 16 11 O -0.40 -13.82 9.18 -117.84 -1.08 -14.90 16 12 C 0.11 3.75 2.74 31.24 0.09 3.83 16 13 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 14 C 0.17 7.33 5.95 86.38 0.51 7.84 16 15 N -0.75 -41.37 5.49 -343.47 -1.88 -43.26 16 16 C -0.34 -20.15 9.99 84.03 0.84 -19.31 16 17 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.11 -6.51 5.50 84.86 0.47 -6.04 16 19 N -0.97 -63.66 13.70 21.65 0.30 -63.36 16 20 Si 1.13 53.65 29.92 68.60 2.05 55.71 16 21 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.10 2.52 4.87 87.29 0.43 2.95 16 25 N -0.44 -7.17 2.62 -501.99 -1.31 -8.48 16 26 C -0.02 -0.32 10.45 83.21 0.87 0.55 16 27 C -0.22 -3.68 10.86 22.14 0.24 -3.44 16 28 C -0.22 -3.73 10.86 22.14 0.24 -3.49 16 29 C -0.03 -0.44 11.39 83.21 0.95 0.51 16 30 H 0.07 1.17 7.92 -2.38 -0.02 1.16 16 31 H 0.07 1.82 5.95 -2.39 -0.01 1.80 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.12 1.15 8.04 -2.39 -0.02 1.13 16 34 H 0.12 1.17 7.32 -2.39 -0.02 1.15 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 0.68 5.87 -2.38 -0.01 0.66 16 37 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.05 1.05 7.40 -2.38 -0.02 1.03 16 41 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.36 20.88 6.36 -92.71 -0.59 20.29 16 44 H 0.24 15.92 6.77 -92.71 -0.63 15.30 16 45 H 0.08 2.40 7.27 -2.38 -0.02 2.38 16 46 H 0.10 2.33 8.11 -2.39 -0.02 2.31 16 47 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 49 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 50 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -80.14 395.04 4.01 -76.13 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.47 Total: 34.47 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 7.29 Total: -5.16 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -4.69 Total: -128.96 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.12 Total: -32.18 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 2.05 Total: 55.71 kcal Total: -80.14 4.01 -76.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201891250.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.813 kcal (2) G-P(sol) polarization free energy of solvation -80.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds