Wall clock time and date at job start Tue Mar 31 2020 19:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46564 * 2 1 4 4 C 1.53002 * 109.47375 * 119.99883 * 2 1 3 5 5 C 1.50698 * 109.46926 * 295.00226 * 4 2 1 6 6 O 1.21272 * 120.00568 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99326 * 179.97438 * 5 4 2 8 8 C 1.47511 * 118.76159 * 0.02562 * 7 5 4 9 9 C 1.53567 * 111.02722 * 138.34720 * 8 7 5 10 10 C 1.51534 * 109.58523 * 320.02078 * 9 8 7 11 11 O 1.42162 * 108.75359 * 91.40172 * 10 9 8 12 12 C 1.38013 * 119.43638 * 272.76802 * 11 10 9 13 13 H 1.09000 * 109.46918 * 303.43183 * 12 11 10 14 14 C 1.52996 * 109.46674 * 183.43147 * 12 11 10 15 15 N 1.46506 * 109.46857 * 65.00404 * 14 12 11 16 16 C 1.36942 * 119.99593 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00101 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99416 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99553 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00134 * 359.97438 * 18 16 15 21 21 H 1.48510 * 109.46874 * 90.00177 * 20 18 16 22 22 H 1.48502 * 109.47073 * 209.99409 * 20 18 16 23 23 H 1.48494 * 109.47213 * 330.00154 * 20 18 16 24 24 C 1.45124 * 118.75473 * 179.73170 * 7 5 4 25 25 N 1.46500 * 109.47156 * 240.00325 * 2 1 3 26 26 C 1.36341 * 125.63430 * 299.69157 * 25 2 1 27 27 C 1.34856 * 108.21893 * 180.26273 * 26 25 2 28 28 C 1.40893 * 107.41387 * 359.97438 * 27 26 25 29 29 C 1.34845 * 107.42021 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.47148 * 299.99551 * 1 2 3 31 31 H 1.08997 * 109.47373 * 60.00089 * 1 2 3 32 32 H 1.09000 * 109.46564 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46969 * 55.00094 * 4 2 1 34 34 H 1.08993 * 109.47104 * 175.00099 * 4 2 1 35 35 H 1.08997 * 109.16674 * 258.74743 * 8 7 5 36 36 H 1.08999 * 109.16455 * 17.95127 * 8 7 5 37 37 H 1.09004 * 109.45527 * 80.05935 * 9 8 7 38 38 H 1.09008 * 109.45123 * 200.01021 * 9 8 7 39 39 H 1.09001 * 109.59308 * 211.18152 * 10 9 8 40 40 H 1.08996 * 109.58810 * 331.62043 * 10 9 8 41 41 H 1.09000 * 109.47319 * 184.99747 * 14 12 11 42 42 H 1.08999 * 109.47653 * 305.00312 * 14 12 11 43 43 H 0.96992 * 120.00146 * 359.97438 * 15 14 12 44 44 H 0.96996 * 120.00241 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.46034 * 29.32651 * 24 7 5 46 46 H 1.08992 * 109.46146 * 149.28644 * 24 7 5 47 47 H 1.07998 * 125.89441 * 0.22555 * 26 25 2 48 48 H 1.07999 * 126.28963 * 179.97438 * 27 26 25 49 49 H 1.07995 * 126.28880 * 179.97438 * 28 27 26 50 50 H 1.08006 * 125.89233 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4765 6 8 1.0110 1.0869 2.3634 7 7 1.9846 -0.3920 3.7001 8 6 2.7510 -1.6479 3.8061 9 6 3.8569 -1.5309 4.8650 10 6 4.4991 -0.1610 4.7796 11 8 3.8165 0.7196 5.6625 12 6 2.6992 1.3959 5.2162 13 1 2.9557 1.9758 4.3295 14 6 2.2003 2.3370 6.3144 15 7 3.2062 3.3725 6.5642 16 6 2.9780 4.3342 7.5121 17 1 2.0567 4.3290 8.0757 18 6 3.9313 5.3150 7.7491 19 7 3.7117 6.2396 8.6598 20 14 5.5255 5.3226 6.7757 21 1 5.3516 6.1389 5.5474 22 1 6.6102 5.9041 7.6068 23 1 5.8822 3.9313 6.3991 24 6 1.5918 0.3819 4.8633 25 7 2.0184 -0.6905 -1.1962 26 6 1.7657 -1.9901 -1.5220 27 6 2.3879 -2.2613 -2.6873 28 6 3.0484 -1.0859 -3.0961 29 6 2.8052 -0.1414 -2.1649 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6055 -1.7198 1.2952 34 1 3.1264 -0.7994 1.2056 35 1 2.0752 -2.4573 4.0823 36 1 3.2028 -1.8740 2.8402 37 1 3.4261 -1.6687 5.8568 38 1 4.6119 -2.2970 4.6877 39 1 5.5474 -0.2300 5.0705 40 1 4.4247 0.2144 3.7591 41 1 1.2686 2.8049 5.9965 42 1 2.0283 1.7695 7.2289 43 1 4.0337 3.3770 6.0583 44 1 4.3779 6.9248 8.8258 45 1 0.6689 0.9199 4.6468 46 1 1.4317 -0.2881 5.7080 47 1 1.1704 -2.6831 -0.9459 48 1 2.3811 -3.2059 -3.2108 49 1 3.6413 -0.9640 -3.9905 50 1 3.1701 0.8749 -2.1835 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201891252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:49 Heat of formation + Delta-G solvation = -23.797018 kcal Electronic energy + Delta-G solvation = -29867.009698 eV Core-core repulsion = 25895.357142 eV Total energy + Delta-G solvation = -3971.652556 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.27629 -41.61943 -39.88911 -37.08391 -36.43282 -36.03735 -34.37145 -33.02810 -31.35592 -30.38913 -29.61256 -29.18700 -27.62929 -26.60942 -24.45605 -23.49114 -22.83617 -22.39421 -21.38197 -20.59638 -19.83032 -19.79344 -18.85674 -17.98731 -17.64553 -17.49103 -17.12596 -16.57641 -16.23942 -16.05587 -15.57737 -15.22974 -15.22116 -14.92124 -14.85335 -14.65312 -14.39263 -14.10485 -13.99891 -13.72093 -13.65062 -13.56534 -13.29571 -13.12649 -12.93616 -12.88233 -12.83095 -12.67505 -12.44928 -12.35737 -12.16668 -12.10449 -11.97409 -11.84562 -11.50862 -11.05610 -10.92129 -10.61283 -9.70172 -9.51423 -9.34379 -9.02911 -8.05839 -5.39047 1.33946 1.36879 1.38409 1.45144 1.46041 1.68832 2.16035 2.19063 2.45396 2.65715 3.25790 3.38208 3.41679 3.48123 3.72531 3.79838 3.93023 4.00804 4.02668 4.08838 4.17036 4.23403 4.25726 4.40248 4.41624 4.42253 4.45217 4.48760 4.64622 4.67651 4.71391 4.75438 4.81722 4.85225 4.86790 4.92303 5.04568 5.09327 5.14850 5.19515 5.44028 5.46993 5.47927 5.70667 6.13364 6.17194 6.20143 6.37587 6.52368 6.68152 7.02601 7.03804 7.79166 7.98866 9.15555 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.002662 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.690680 B =10517.761339 C =10970.096943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.089 0.911 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.570 6.570 7 N -0.605 5.605 8 C 0.099 3.901 9 C -0.159 4.159 10 C 0.062 3.938 11 O -0.399 6.399 12 C 0.101 3.899 13 H 0.029 0.971 14 C 0.165 3.835 15 N -0.754 5.754 16 C -0.235 4.235 17 H 0.060 0.940 18 C -0.063 4.063 19 N -0.982 5.982 20 Si 0.955 3.045 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.256 1.256 24 C 0.093 3.907 25 N -0.443 5.443 26 C -0.015 4.015 27 C -0.221 4.221 28 C -0.219 4.219 29 C -0.032 4.032 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.182 0.818 48 H 0.145 0.855 49 H 0.140 0.860 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -26.677 -21.642 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.107 0.893 4 C -0.178 4.178 5 C 0.297 3.703 6 O -0.449 6.449 7 N -0.337 5.337 8 C -0.021 4.021 9 C -0.197 4.197 10 C -0.014 4.014 11 O -0.319 6.319 12 C 0.041 3.959 13 H 0.047 0.953 14 C 0.038 3.962 15 N -0.400 5.400 16 C -0.366 4.366 17 H 0.078 0.922 18 C -0.254 4.254 19 N -0.632 5.632 20 Si 0.782 3.218 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.181 1.181 24 C -0.031 4.031 25 N -0.119 5.119 26 C -0.144 4.144 27 C -0.246 4.246 28 C -0.244 4.244 29 C -0.162 4.162 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.198 0.802 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.120 0.880 47 H 0.199 0.801 48 H 0.162 0.838 49 H 0.158 0.842 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.361 -25.881 -21.041 33.438 hybrid contribution 0.841 0.893 -0.378 1.283 sum -1.521 -24.988 -21.419 32.946 Atomic orbital electron populations 1.22190 0.92790 1.03411 1.03314 1.21014 0.95981 0.96176 0.82067 0.89263 1.22013 1.04473 1.01297 0.89990 1.20947 0.78765 0.85177 0.85404 1.90728 1.41472 1.26053 1.86658 1.48017 1.55222 1.25266 1.05244 1.22356 0.93795 0.84200 1.01795 1.22438 0.99103 0.97792 1.00332 1.22444 0.96442 0.89321 0.93146 1.86362 1.42407 1.60104 1.42985 1.21833 0.86768 0.91866 0.95477 0.95300 1.20744 0.91534 0.88083 0.95837 1.42593 1.20006 1.31744 1.45624 1.19063 1.02368 1.03384 1.11775 0.92193 1.25482 1.02206 0.97403 1.00349 1.69873 1.37150 1.18406 1.37779 0.85407 0.79855 0.78398 0.78165 1.20594 1.21663 1.18117 1.21983 0.97679 0.94566 0.88913 1.44374 1.39194 1.10383 1.17949 1.22144 1.06385 0.86074 0.99814 1.21172 1.05049 0.99754 0.98604 1.21152 1.07208 0.94347 1.01648 1.22151 1.01642 1.00430 0.91961 0.90457 0.92549 0.90677 0.85174 0.86786 0.88662 0.87334 0.90646 0.86281 0.88544 0.93653 0.94022 0.94574 0.80229 0.93228 0.89850 0.87996 0.80088 0.83769 0.84247 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.98 71.98 0.65 -1.88 16 2 C 0.15 2.31 2.67 44.99 0.12 2.43 16 3 H 0.09 1.70 7.88 -2.39 -0.02 1.68 16 4 C -0.14 -1.62 3.50 29.85 0.10 -1.51 16 5 C 0.51 9.94 7.35 87.66 0.64 10.58 16 6 O -0.57 -16.19 13.39 -3.00 -0.04 -16.23 16 7 N -0.61 -10.74 2.20 -819.11 -1.80 -12.54 16 8 C 0.10 0.92 6.00 86.38 0.52 1.44 16 9 C -0.16 -1.89 5.78 30.30 0.18 -1.72 16 10 C 0.06 1.27 6.38 71.50 0.46 1.72 16 11 O -0.40 -12.34 9.38 -117.84 -1.11 -13.45 16 12 C 0.10 3.23 2.67 31.01 0.08 3.31 16 13 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 14 C 0.16 6.68 5.92 86.38 0.51 7.19 16 15 N -0.75 -38.09 5.34 -343.44 -1.83 -39.92 16 16 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 17 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 18 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 19 N -0.98 -64.68 13.97 21.65 0.30 -64.37 16 20 Si 0.95 47.76 27.73 68.60 1.90 49.66 16 21 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.26 -11.90 6.52 99.48 0.65 -11.25 16 24 C 0.09 2.24 4.82 87.06 0.42 2.66 16 25 N -0.44 -6.85 2.62 -501.99 -1.31 -8.16 16 26 C -0.01 -0.20 10.45 83.22 0.87 0.67 16 27 C -0.22 -3.46 10.86 22.14 0.24 -3.22 16 28 C -0.22 -3.78 10.86 22.14 0.24 -3.54 16 29 C -0.03 -0.55 11.39 83.21 0.95 0.39 16 30 H 0.08 1.57 5.95 -2.39 -0.01 1.56 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.90 7.92 -2.39 -0.02 0.88 16 33 H 0.13 0.80 7.95 -2.39 -0.02 0.78 16 34 H 0.11 1.11 7.41 -2.39 -0.02 1.09 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.11 0.49 5.88 -2.39 -0.01 0.47 16 37 H 0.07 1.10 8.01 -2.38 -0.02 1.09 16 38 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 0.92 7.40 -2.39 -0.02 0.90 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.36 18.03 5.52 -92.71 -0.51 17.52 16 44 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 45 H 0.08 2.24 7.26 -2.38 -0.02 2.22 16 46 H 0.10 2.12 8.11 -2.39 -0.02 2.10 16 47 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 48 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 49 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 50 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -79.61 393.85 3.78 -75.82 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.35 Total: 27.28 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 7.32 Total: 1.91 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -4.65 Total: -125.00 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.15 Total: -29.68 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.90 Total: 49.66 kcal Total: -79.61 3.78 -75.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201891252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.028 kcal (2) G-P(sol) polarization free energy of solvation -79.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds