Wall clock time and date at job start Tue Mar 31 2020 18:38:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09011 * 110.27101 * 2 1
4 4 C 1.53991 * 110.31182 * 237.91205 * 2 1 3
5 5 N 1.47905 * 107.22505 * 242.20979 * 4 2 1
6 6 C 1.46897 * 111.00050 * 214.25344 * 5 4 2
7 7 C 1.50694 * 109.47194 * 169.99666 * 6 5 4
8 8 O 1.21297 * 120.00284 * 359.97438 * 7 6 5
9 9 N 1.34779 * 120.00402 * 179.97438 * 7 6 5
10 10 C 1.37094 * 120.00292 * 180.02562 * 9 7 6
11 11 H 1.08004 * 120.00201 * 0.02562 * 10 9 7
12 12 C 1.38952 * 119.99684 * 180.02562 * 10 9 7
13 13 N 1.31401 * 120.00308 * 0.02562 * 12 10 9
14 14 Si 1.86803 * 119.99566 * 180.02562 * 12 10 9
15 15 H 1.48499 * 109.47171 * 60.00435 * 14 12 10
16 16 H 1.48503 * 109.46899 * 180.02562 * 14 12 10
17 17 H 1.48497 * 109.47565 * 299.99939 * 14 12 10
18 18 C 1.48813 * 105.67450 * 334.90354 * 5 4 2
19 19 C 1.54594 * 110.30938 * 122.19025 * 2 1 3
20 20 H 1.08999 * 110.72080 * 22.51913 * 19 2 1
21 21 N 1.46501 * 110.72774 * 259.41354 * 19 2 1
22 22 C 1.34772 * 120.00171 * 154.99948 * 21 19 2
23 23 O 1.21281 * 119.99683 * 359.97438 * 22 21 19
24 24 C 1.50697 * 119.99893 * 179.97438 * 22 21 19
25 25 C 1.53006 * 109.46873 * 179.97438 * 24 22 21
26 26 H 1.08996 * 110.34406 * 304.16532 * 25 24 22
27 27 C 1.51095 * 110.38683 * 66.45767 * 25 24 22
28 28 C 1.30523 * 111.10724 * 135.24549 * 27 25 24
29 29 C 1.51104 * 111.10353 * 359.97438 * 28 27 25
30 30 C 1.54632 * 104.72627 * 343.56408 * 29 28 27
31 31 H 1.08998 * 109.46981 * 180.63150 * 1 2 3
32 32 H 1.08994 * 109.47621 * 300.63904 * 1 2 3
33 33 H 1.09006 * 109.46811 * 60.64029 * 1 2 3
34 34 H 1.09002 * 109.91707 * 1.66039 * 4 2 1
35 35 H 1.09002 * 109.91668 * 122.75830 * 4 2 1
36 36 H 1.09000 * 109.47143 * 290.00333 * 6 5 4
37 37 H 1.09011 * 109.46966 * 49.99945 * 6 5 4
38 38 H 0.97004 * 119.99442 * 0.02562 * 9 7 6
39 39 H 0.97010 * 120.00236 * 179.97438 * 13 12 10
40 40 H 1.08998 * 110.51915 * 280.54171 * 18 5 4
41 41 H 1.09009 * 110.83927 * 157.56590 * 18 5 4
42 42 H 0.97002 * 119.99561 * 334.99660 * 21 19 2
43 43 H 1.08996 * 109.47588 * 299.99896 * 24 22 21
44 44 H 1.09001 * 109.47329 * 60.00087 * 24 22 21
45 45 H 1.08006 * 124.44768 * 315.26433 * 27 25 24
46 46 H 1.08004 * 124.45129 * 180.02562 * 28 27 25
47 47 H 1.09006 * 110.38530 * 102.37179 * 29 28 27
48 48 H 1.08996 * 110.38641 * 224.63389 * 29 28 27
49 49 H 1.08997 * 111.03593 * 266.60416 * 30 29 28
50 50 H 1.08994 * 111.04005 * 142.66315 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9076 1.0226 0.0000
4 6 2.0645 -0.7672 -1.2235
5 7 2.8343 -1.9228 -0.7139
6 6 3.9777 -2.2199 -1.5869
7 6 4.8718 -3.2312 -0.9169
8 8 4.5850 -3.6617 0.1802
9 7 5.9902 -3.6573 -1.5367
10 6 6.8033 -4.5777 -0.9274
11 1 6.5474 -4.9616 0.0492
12 6 7.9565 -5.0165 -1.5662
13 7 8.2681 -4.5491 -2.7541
14 14 9.0640 -6.2712 -0.7362
15 1 8.2975 -7.5177 -0.4835
16 1 10.2204 -6.5709 -1.6184
17 1 9.5551 -5.7220 0.5531
18 6 3.2855 -1.5352 0.6502
19 6 2.0665 -0.7724 1.2270
20 1 1.3172 -1.4696 1.6017
21 7 2.4826 0.1549 2.2821
22 6 2.4981 -0.2499 3.5675
23 8 2.1672 -1.3818 3.8507
24 6 2.9267 0.7039 4.6527
25 6 2.8534 -0.0006 6.0089
26 1 1.8519 -0.3968 6.1765
27 6 3.8773 -1.1094 6.0820
28 6 4.5084 -1.0918 7.2244
29 6 4.0111 0.0321 8.1034
30 6 3.2478 0.9738 7.1433
31 1 -0.3633 -1.0276 0.0113
32 1 -0.3634 0.5237 0.8841
33 1 -0.3633 0.5039 -0.8957
34 1 1.2327 -1.1159 -1.8356
35 1 2.7135 -0.1197 -1.8133
36 1 3.6172 -2.6238 -2.5330
37 1 4.5400 -1.3048 -1.7733
38 1 6.2197 -3.3127 -2.4139
39 1 9.0735 -4.8552 -3.1999
40 1 4.1563 -0.8822 0.5934
41 1 3.5065 -2.4177 1.2508
42 1 2.7469 1.0603 2.0555
43 1 3.9501 1.0296 4.4669
44 1 2.2649 1.5700 4.6574
45 1 4.0628 -1.8227 5.2925
46 1 5.2847 -1.7885 7.5043
47 1 3.3394 -0.3542 8.8701
48 1 4.8502 0.5544 8.5630
49 1 3.8989 1.7648 6.7714
50 1 2.3637 1.3911 7.6253
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205883537.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:38:57
Heat of formation + Delta-G solvation = -52.844539 kcal
Electronic energy + Delta-G solvation = -29205.510648 eV
Core-core repulsion = 25232.598497 eV
Total energy + Delta-G solvation = -3972.912151 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.30468 -39.28607 -38.25230 -37.47990 -34.45972 -33.84252 -32.58741 -31.66261
-31.24658 -29.07473 -28.80759 -27.29648 -25.71176 -25.06294 -23.73826 -21.43306
-20.66569 -20.58881 -20.06756 -19.20148 -18.73347 -17.85796 -17.01691 -16.55721
-16.14302 -15.86896 -15.47608 -15.01860 -14.95147 -14.51695 -14.40620 -14.10325
-13.88993 -13.58229 -13.50571 -13.18714 -12.93964 -12.72683 -12.30402 -12.19866
-11.98627 -11.96538 -11.87842 -11.69669 -11.53068 -11.42048 -11.30857 -11.26673
-11.19651 -11.03431 -10.88323 -10.79695 -10.58601 -10.40272 -10.20349 -9.71554
-9.47875 -8.98070 -8.93882 -8.35270 -8.00291 -7.88120 -6.41108 -3.81746
2.28004 2.69689 3.12052 3.21129 3.26536 3.31497 3.90486 4.10066
4.31730 4.39455 4.46074 4.55076 4.68014 4.74712 4.79862 4.86782
5.06019 5.08676 5.21125 5.25680 5.30901 5.37652 5.38636 5.42621
5.48078 5.52133 5.54913 5.62770 5.70634 5.72125 5.76650 5.84894
5.87197 5.94086 5.97823 6.04821 6.12139 6.15238 6.21786 6.27439
6.48976 6.60089 6.76166 6.87894 7.21048 7.30321 7.50933 7.56175
8.06743 8.28890 8.62611 9.18904 9.54357 10.06635 10.76577
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.008627 B = 0.003106 C = 0.002357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3244.878124 B = 9011.566648 C =11878.299813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.108 4.108
3 H 0.076 0.924
4 C 0.037 3.963
5 N -0.493 5.493
6 C 0.038 3.962
7 C 0.440 3.560
8 O -0.577 6.577
9 N -0.562 5.562
10 C -0.299 4.299
11 H 0.103 0.897
12 C 0.023 3.977
13 N -0.903 5.903
14 Si 0.930 3.070
15 H -0.273 1.273
16 H -0.284 1.284
17 H -0.274 1.274
18 C 0.033 3.967
19 C 0.140 3.860
20 H 0.104 0.896
21 N -0.725 5.725
22 C 0.511 3.489
23 O -0.528 6.528
24 C -0.132 4.132
25 C -0.053 4.053
26 H 0.089 0.911
27 C -0.140 4.140
28 C -0.186 4.186
29 C -0.098 4.098
30 C -0.122 4.122
31 H 0.063 0.937
32 H 0.053 0.947
33 H 0.056 0.944
34 H 0.081 0.919
35 H 0.044 0.956
36 H 0.091 0.909
37 H 0.048 0.952
38 H 0.392 0.608
39 H 0.272 0.728
40 H 0.036 0.964
41 H 0.122 0.878
42 H 0.396 0.604
43 H 0.094 0.906
44 H 0.092 0.908
45 H 0.129 0.871
46 H 0.122 0.878
47 H 0.071 0.929
48 H 0.067 0.933
49 H 0.072 0.928
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.815 17.138 10.563 23.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.128 4.128
3 H 0.094 0.906
4 C -0.091 4.091
5 N -0.218 5.218
6 C -0.094 4.094
7 C 0.226 3.774
8 O -0.461 6.461
9 N -0.199 5.199
10 C -0.428 4.428
11 H 0.121 0.879
12 C -0.179 4.179
13 N -0.544 5.544
14 Si 0.757 3.243
15 H -0.198 1.198
16 H -0.210 1.210
17 H -0.199 1.199
18 C -0.095 4.095
19 C 0.035 3.965
20 H 0.122 0.878
21 N -0.376 5.376
22 C 0.297 3.703
23 O -0.403 6.403
24 C -0.172 4.172
25 C -0.072 4.072
26 H 0.107 0.893
27 C -0.157 4.157
28 C -0.204 4.204
29 C -0.135 4.135
30 C -0.160 4.160
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.075 0.925
34 H 0.099 0.901
35 H 0.062 0.938
36 H 0.109 0.891
37 H 0.066 0.934
38 H 0.225 0.775
39 H 0.082 0.918
40 H 0.054 0.946
41 H 0.140 0.860
42 H 0.230 0.770
43 H 0.112 0.888
44 H 0.110 0.890
45 H 0.147 0.853
46 H 0.140 0.860
47 H 0.090 0.910
48 H 0.085 0.915
49 H 0.090 0.910
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -12.396 15.491 11.389 22.877
hybrid contribution 1.579 0.750 -0.687 1.878
sum -10.817 16.242 10.702 22.256
Atomic orbital electron populations
1.21810 0.93926 1.02547 1.01393 1.22246 0.96834 0.98931 0.94779
0.90602 1.23022 0.98448 0.91512 0.96145 1.64605 1.20622 1.34445
1.02109 1.22106 0.91727 0.98355 0.97191 1.19729 0.83457 0.86572
0.87656 1.90474 1.73798 1.60644 1.21209 1.41839 1.20194 1.38638
1.19194 1.19660 1.02079 1.17766 1.03327 0.87947 1.25252 0.97955
0.98782 0.95887 1.69602 1.26712 1.44235 1.13844 0.85925 0.79019
0.80582 0.78757 1.19823 1.20973 1.19920 1.23850 0.94221 1.00743
0.90727 1.22088 0.97457 0.90906 0.86039 0.87814 1.46021 1.69211
1.15796 1.06596 1.20684 0.77414 0.88823 0.83366 1.90745 1.46987
1.20092 1.82465 1.21726 1.03447 0.98443 0.93629 1.20820 0.99937
0.93883 0.92525 0.89277 1.23392 0.95630 0.98478 0.98240 1.23249
1.00816 1.00024 0.96278 1.21323 0.99351 0.95066 0.97779 1.22560
1.00105 0.97413 0.95878 0.91804 0.92792 0.92500 0.90058 0.93800
0.89069 0.93426 0.77489 0.91827 0.94584 0.86047 0.77013 0.88786
0.88971 0.85298 0.86018 0.91017 0.91456 0.90953 0.90969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.29 8.89 37.16 0.33 -0.96 16
2 C -0.11 -1.16 3.32 -89.27 -0.30 -1.45 16
3 H 0.08 0.67 7.76 -51.92 -0.40 0.27 16
4 C 0.04 0.47 6.35 -2.75 -0.02 0.45 16
5 N -0.49 -8.47 5.27 -231.64 -1.22 -9.69 16
6 C 0.04 0.69 5.52 -4.98 -0.03 0.67 16
7 C 0.44 10.58 7.50 -10.99 -0.08 10.50 16
8 O -0.58 -15.78 13.11 5.54 0.07 -15.70 16
9 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16
10 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16
11 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16
12 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16
13 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16
14 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16
15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
18 C 0.03 0.58 5.00 -1.74 -0.01 0.57 16
19 C 0.14 1.92 2.97 -66.07 -0.20 1.72 16
20 H 0.10 1.66 7.26 -51.93 -0.38 1.28 16
21 N -0.72 -8.12 5.18 -52.01 -0.27 -8.39 16
22 C 0.51 6.51 7.59 -10.99 -0.08 6.42 16
23 O -0.53 -9.08 14.33 5.56 0.08 -9.00 16
24 C -0.13 -1.19 5.12 -27.88 -0.14 -1.33 16
25 C -0.05 -0.54 2.55 -90.70 -0.23 -0.77 16
26 H 0.09 1.01 8.01 -51.93 -0.42 0.59 16
27 C -0.14 -1.75 9.19 -35.70 -0.33 -2.08 16
28 C -0.19 -2.04 10.77 -35.69 -0.38 -2.42 16
29 C -0.10 -0.84 6.81 -26.83 -0.18 -1.03 16
30 C -0.12 -0.95 6.71 -25.00 -0.17 -1.12 16
31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16
35 H 0.04 0.51 7.57 -51.93 -0.39 0.12 16
36 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16
37 H 0.05 0.79 7.81 -51.92 -0.41 0.38 16
38 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16
39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16
40 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16
41 H 0.12 2.74 6.01 -51.92 -0.31 2.43 16
42 H 0.40 3.16 8.39 -40.82 -0.34 2.81 16
43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
44 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16
45 H 0.13 1.96 7.31 -52.48 -0.38 1.57 16
46 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16
47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
49 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16
50 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
LS Contribution 398.98 15.07 6.01 6.01
Total: -1.00 -33.43 398.98 -10.06 -43.49
By element:
Atomic # 1 Polarization: 22.67 SS G_CDS: -8.32 Total: 14.36 kcal
Atomic # 6 Polarization: 3.17 SS G_CDS: -2.06 Total: 1.11 kcal
Atomic # 7 Polarization: -55.78 SS G_CDS: -0.82 Total: -56.60 kcal
Atomic # 8 Polarization: -24.86 SS G_CDS: 0.15 Total: -24.71 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -33.43 -10.06 -43.49 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205883537.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.359 kcal
(2) G-P(sol) polarization free energy of solvation -33.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.785 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds