Wall clock time and date at job start Tue Mar 31 2020 18:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32997 * 119.99878 * 2 1 4 4 C 1.47098 * 119.99944 * 353.11046 * 3 2 1 5 5 O 1.21609 * 120.00236 * 353.76588 * 4 3 2 6 6 N 1.34780 * 120.00086 * 173.76930 * 4 3 2 7 7 C 1.46497 * 120.00456 * 179.97438 * 6 4 3 8 8 H 1.09003 * 110.64113 * 31.84644 * 7 6 4 9 9 C 1.54931 * 110.72537 * 268.50220 * 7 6 4 10 10 N 1.48530 * 103.22773 * 204.22321 * 9 7 6 11 11 C 1.46894 * 111.00236 * 159.71922 * 10 9 7 12 12 C 1.50701 * 109.47316 * 52.60404 * 11 10 9 13 13 O 1.21289 * 119.99491 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00098 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99819 * 179.72656 * 14 12 11 16 16 H 1.08005 * 119.99954 * 0.27448 * 15 14 12 17 17 C 1.38952 * 120.00113 * 180.27616 * 15 14 12 18 18 N 1.31403 * 120.00017 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47202 * 89.99709 * 19 17 15 21 21 H 1.48498 * 109.47242 * 209.99894 * 19 17 15 22 22 H 1.48500 * 109.47007 * 330.00317 * 19 17 15 23 23 C 1.47907 * 105.81935 * 39.20400 * 10 9 7 24 24 C 1.53990 * 107.05982 * 334.67308 * 23 10 9 25 25 H 1.08998 * 110.31299 * 120.13408 * 24 23 10 26 26 C 1.52997 * 110.30972 * 242.20995 * 24 23 10 27 27 C 1.50698 * 120.00261 * 180.02562 * 2 1 3 28 28 C 1.52998 * 117.49911 * 8.61838 * 27 2 1 29 29 C 1.53004 * 117.49585 * 299.99513 * 27 2 1 30 30 H 1.08999 * 109.47671 * 84.53205 * 1 2 3 31 31 H 1.09002 * 109.47264 * 204.52984 * 1 2 3 32 32 H 1.09003 * 109.47212 * 324.52916 * 1 2 3 33 33 H 1.08004 * 120.00041 * 173.10815 * 3 2 1 34 34 H 0.97003 * 119.99498 * 359.97438 * 6 4 3 35 35 H 1.08995 * 110.66837 * 85.78789 * 9 7 6 36 36 H 1.09001 * 110.66590 * 322.65894 * 9 7 6 37 37 H 1.09003 * 109.47479 * 292.60476 * 11 10 9 38 38 H 1.08994 * 109.47459 * 172.60758 * 11 10 9 39 39 H 0.96996 * 120.00820 * 0.02562 * 14 12 11 40 40 H 0.97003 * 119.99955 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.91446 * 94.02043 * 23 10 9 42 42 H 1.08996 * 109.91874 * 215.31148 * 23 10 9 43 43 H 1.08998 * 109.47258 * 58.54178 * 26 24 23 44 44 H 1.08997 * 109.47539 * 178.54703 * 26 24 23 45 45 H 1.09009 * 109.46851 * 298.54675 * 26 24 23 46 46 H 1.09002 * 115.55338 * 154.32887 * 27 2 1 47 47 H 1.09004 * 117.49930 * 0.02562 * 28 27 2 48 48 H 1.09001 * 117.50167 * 145.02364 * 28 27 2 49 49 H 1.08996 * 117.49747 * 214.97478 * 29 27 2 50 50 H 1.08999 * 117.50046 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4211 -0.1528 5 8 0.2521 2.4136 -0.3923 6 7 2.0991 3.5925 -0.0275 7 6 1.3747 4.8566 -0.1802 8 1 0.3450 4.7532 0.1622 9 6 1.4214 5.3411 -1.6511 10 7 1.2184 6.8077 -1.5325 11 6 1.6976 7.5043 -2.7336 12 6 1.0738 6.8835 -3.9569 13 8 0.3053 5.9525 -3.8395 14 7 1.3699 7.3626 -5.1813 15 6 0.8068 6.7941 -6.2945 16 1 0.1224 5.9651 -6.1900 17 6 1.1165 7.2844 -7.5572 18 7 1.9488 8.2933 -7.6844 19 14 0.3497 6.5093 -9.0741 20 1 -0.9263 7.1995 -9.3913 21 1 1.2823 6.6406 -10.2222 22 1 0.0834 5.0717 -8.8144 23 6 1.9830 7.2252 -0.3371 24 6 2.0928 5.9942 0.5816 25 1 3.1392 5.7373 0.7465 26 6 1.3964 6.2642 1.9168 27 6 2.2605 -1.3050 -0.0006 28 6 1.4517 -2.5877 -0.2045 29 6 2.0261 -2.2566 1.1744 30 1 -0.3634 0.0979 -1.0229 31 1 -0.3634 -0.9349 0.4267 32 1 -0.3634 0.8370 0.5964 33 1 3.2461 1.1552 0.1122 34 1 3.0500 3.5985 0.1639 35 1 0.6181 4.8872 -2.2313 36 1 2.3913 5.1218 -2.0977 37 1 2.7824 7.4179 -2.7954 38 1 1.4196 8.5568 -2.6785 39 1 1.9848 8.1069 -5.2753 40 1 2.1647 8.6358 -8.5659 41 1 2.9781 7.5592 -0.6308 42 1 1.4563 8.0279 0.1789 43 1 0.3493 6.5085 1.7376 44 1 1.4598 5.3764 2.5459 45 1 1.8838 7.1004 2.4183 46 1 3.2632 -1.2688 -0.4266 47 1 0.3746 -2.4876 -0.3387 48 1 1.9222 -3.3956 -0.7649 49 1 2.8745 -2.8467 1.5211 50 1 1.3266 -1.9389 1.9476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206321251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:53 Heat of formation + Delta-G solvation = -21.454914 kcal Electronic energy + Delta-G solvation = -28907.814324 eV Core-core repulsion = 24936.263330 eV Total energy + Delta-G solvation = -3971.550994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21019 -39.14998 -38.14811 -37.50459 -34.50633 -33.84326 -33.26656 -32.50132 -31.23655 -29.13567 -27.82395 -27.03401 -25.31144 -24.47204 -23.52279 -22.71465 -21.35340 -20.57664 -20.21554 -19.18858 -18.59360 -17.84620 -17.05542 -16.60660 -16.10848 -15.80873 -15.16171 -15.02402 -14.71161 -14.47441 -14.35648 -14.06162 -13.86805 -13.53000 -13.48280 -13.17706 -13.12356 -13.00463 -12.68183 -12.28491 -12.15979 -11.84518 -11.81534 -11.66643 -11.55981 -11.51730 -11.24601 -11.19522 -11.14208 -11.03248 -10.78984 -10.77296 -10.55190 -10.35409 -10.19666 -9.54282 -9.46844 -9.16591 -8.79874 -8.33503 -7.98650 -7.85895 -6.40013 -3.80534 1.22024 3.17259 3.19623 3.26865 3.28070 3.34481 3.60474 3.91953 4.11246 4.24130 4.37403 4.49975 4.57519 4.57689 4.73677 4.78196 4.82631 4.91412 5.08764 5.12876 5.25310 5.26977 5.40592 5.42879 5.45095 5.52162 5.54789 5.57277 5.68342 5.72351 5.74400 5.80910 5.87385 5.89211 5.95635 5.97475 5.99949 6.17680 6.21548 6.29050 6.34887 6.43621 6.57019 6.80023 7.24604 7.32918 7.57490 7.59365 8.08299 8.34871 8.63918 9.20256 9.55747 10.08037 10.77761 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.002728 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.907750 B =10260.556461 C =12671.059514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.000 4.000 3 C -0.228 4.228 4 C 0.545 3.455 5 O -0.531 6.531 6 N -0.720 5.720 7 C 0.142 3.858 8 H 0.104 0.896 9 C 0.032 3.968 10 N -0.493 5.493 11 C 0.038 3.962 12 C 0.441 3.559 13 O -0.576 6.576 14 N -0.563 5.563 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.037 3.963 24 C -0.109 4.109 25 H 0.075 0.925 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.172 4.172 29 C -0.167 4.167 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.396 0.604 35 H 0.123 0.877 36 H 0.036 0.964 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 -12.388 20.294 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.002 4.002 3 C -0.249 4.249 4 C 0.335 3.665 5 O -0.410 6.410 6 N -0.370 5.370 7 C 0.036 3.964 8 H 0.122 0.878 9 C -0.096 4.096 10 N -0.218 5.218 11 C -0.094 4.094 12 C 0.226 3.774 13 O -0.461 6.461 14 N -0.199 5.199 15 C -0.427 4.427 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.091 4.091 24 C -0.128 4.128 25 H 0.094 0.906 26 C -0.197 4.197 27 C -0.152 4.152 28 C -0.208 4.208 29 C -0.204 4.204 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.230 0.770 35 H 0.141 0.859 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.134 0.866 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.093 -12.764 20.062 24.128 hybrid contribution 1.795 0.195 -1.034 2.080 sum 5.888 -12.569 19.028 23.552 Atomic orbital electron populations 1.21192 0.90705 1.02274 1.04083 1.21773 0.96225 0.92264 0.89951 1.22259 1.00130 0.91937 1.10546 1.18476 0.87063 0.84097 0.76878 1.90797 1.15051 1.87428 1.47714 1.45863 1.12356 1.05595 1.73208 1.22092 0.97073 0.81410 0.95783 0.87778 1.23836 1.02424 0.88111 0.95270 1.64565 1.51235 1.04602 1.01367 1.22108 0.97372 0.99484 0.90458 1.19734 0.86614 0.86906 0.84122 1.90471 1.39111 1.30841 1.85634 1.41843 1.41763 1.31813 1.04512 1.19709 1.24343 1.15268 0.83373 0.87900 1.25256 0.96994 0.96488 0.99223 1.69612 1.34688 1.25191 1.24903 0.85862 0.78578 0.79596 0.80302 1.20365 1.20960 1.19406 1.23029 0.96805 0.97166 0.92105 1.22247 0.99631 0.95169 0.95777 0.90617 1.21807 1.01106 1.01217 0.95527 1.21290 1.00257 0.88857 1.04759 1.23078 1.00625 0.97635 0.99502 1.22982 1.03681 1.02022 0.91733 0.89884 0.92770 0.88994 0.85806 0.76982 0.85932 0.94551 0.93413 0.89086 0.77489 0.91905 0.93788 0.90026 0.91804 0.92784 0.92509 0.86619 0.87883 0.88250 0.88277 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 7.91 36.00 0.28 -1.15 16 2 C 0.00 0.00 5.81 -101.17 -0.59 -0.59 16 3 C -0.23 -2.49 9.67 -37.81 -0.37 -2.85 16 4 C 0.55 7.61 7.61 -12.66 -0.10 7.52 16 5 O -0.53 -9.37 12.92 5.27 0.07 -9.30 16 6 N -0.72 -8.76 5.17 -53.19 -0.28 -9.04 16 7 C 0.14 2.01 2.98 -66.07 -0.20 1.81 16 8 H 0.10 1.69 7.27 -51.93 -0.38 1.31 16 9 C 0.03 0.58 4.98 -1.90 -0.01 0.57 16 10 N -0.49 -8.58 5.26 -231.90 -1.22 -9.80 16 11 C 0.04 0.69 5.52 -4.98 -0.03 0.67 16 12 C 0.44 10.67 7.49 -10.99 -0.08 10.59 16 13 O -0.58 -15.89 13.10 5.55 0.07 -15.82 16 14 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 15 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 16 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 19 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C 0.04 0.48 6.36 -2.75 -0.02 0.46 16 24 C -0.11 -1.20 3.32 -89.26 -0.30 -1.50 16 25 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 26 C -0.14 -1.33 8.89 37.16 0.33 -1.00 16 27 C -0.13 -1.08 6.01 -91.77 -0.55 -1.63 16 28 C -0.17 -1.20 9.76 -26.73 -0.26 -1.46 16 29 C -0.17 -1.09 10.10 -26.73 -0.27 -1.36 16 30 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.05 0.49 6.31 -51.93 -0.33 0.16 16 32 H 0.09 1.21 6.12 -51.93 -0.32 0.89 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.40 3.60 8.37 -40.82 -0.34 3.26 16 35 H 0.12 2.82 5.97 -51.93 -0.31 2.51 16 36 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 37 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.04 0.52 7.57 -51.93 -0.39 0.13 16 42 H 0.08 0.97 7.68 -51.93 -0.40 0.57 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 46 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.10 0.74 6.42 -51.93 -0.33 0.40 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -33.31 401.13 -10.13 -43.44 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -8.08 Total: 14.79 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.39 Total: 1.99 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.83 Total: -57.56 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.14 Total: -25.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.31 -10.13 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206321251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.989 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds