Wall clock time and date at job start Tue Mar 31 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32997 * 119.99878 * 2 1 4 4 C 1.47098 * 119.99944 * 353.11046 * 3 2 1 5 5 O 1.21609 * 120.00236 * 353.76588 * 4 3 2 6 6 N 1.34780 * 120.00086 * 173.76930 * 4 3 2 7 7 C 1.46497 * 120.00456 * 179.97438 * 6 4 3 8 8 H 1.09003 * 110.64113 * 31.84644 * 7 6 4 9 9 C 1.54931 * 110.72537 * 268.50220 * 7 6 4 10 10 N 1.48530 * 103.22773 * 204.22321 * 9 7 6 11 11 C 1.46894 * 111.00236 * 159.71922 * 10 9 7 12 12 C 1.50701 * 109.47316 * 52.60404 * 11 10 9 13 13 O 1.21289 * 119.99491 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00098 * 180.02562 * 12 11 10 15 15 C 1.37099 * 119.99819 * 179.72656 * 14 12 11 16 16 H 1.08005 * 119.99954 * 0.27448 * 15 14 12 17 17 C 1.38952 * 120.00113 * 180.27616 * 15 14 12 18 18 N 1.31403 * 120.00017 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00078 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47202 * 89.99709 * 19 17 15 21 21 H 1.48498 * 109.47242 * 209.99894 * 19 17 15 22 22 H 1.48500 * 109.47007 * 330.00317 * 19 17 15 23 23 C 1.47907 * 105.81935 * 39.20400 * 10 9 7 24 24 C 1.53990 * 107.05982 * 334.67308 * 23 10 9 25 25 H 1.08998 * 110.31299 * 120.13408 * 24 23 10 26 26 C 1.52997 * 110.30972 * 242.20995 * 24 23 10 27 27 C 1.50698 * 120.00261 * 180.02562 * 2 1 3 28 28 C 1.52998 * 117.49911 * 8.61838 * 27 2 1 29 29 C 1.53004 * 117.49585 * 299.99513 * 27 2 1 30 30 H 1.08999 * 109.47671 * 84.53205 * 1 2 3 31 31 H 1.09002 * 109.47264 * 204.52984 * 1 2 3 32 32 H 1.09003 * 109.47212 * 324.52916 * 1 2 3 33 33 H 1.08004 * 120.00041 * 173.10815 * 3 2 1 34 34 H 0.97003 * 119.99498 * 359.97438 * 6 4 3 35 35 H 1.08995 * 110.66837 * 85.78789 * 9 7 6 36 36 H 1.09001 * 110.66590 * 322.65894 * 9 7 6 37 37 H 1.09003 * 109.47479 * 292.60476 * 11 10 9 38 38 H 1.08994 * 109.47459 * 172.60758 * 11 10 9 39 39 H 0.96996 * 120.00820 * 0.02562 * 14 12 11 40 40 H 0.97003 * 119.99955 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.91446 * 94.02043 * 23 10 9 42 42 H 1.08996 * 109.91874 * 215.31148 * 23 10 9 43 43 H 1.08998 * 109.47258 * 58.54178 * 26 24 23 44 44 H 1.08997 * 109.47539 * 178.54703 * 26 24 23 45 45 H 1.09009 * 109.46851 * 298.54675 * 26 24 23 46 46 H 1.09002 * 115.55338 * 154.32887 * 27 2 1 47 47 H 1.09004 * 117.49930 * 0.02562 * 28 27 2 48 48 H 1.09001 * 117.50167 * 145.02364 * 28 27 2 49 49 H 1.08996 * 117.49747 * 214.97478 * 29 27 2 50 50 H 1.08999 * 117.50046 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4443 2.4211 -0.1528 5 8 0.2521 2.4136 -0.3923 6 7 2.0991 3.5925 -0.0275 7 6 1.3747 4.8566 -0.1802 8 1 0.3450 4.7532 0.1622 9 6 1.4214 5.3411 -1.6511 10 7 1.2184 6.8077 -1.5325 11 6 1.6976 7.5043 -2.7336 12 6 1.0738 6.8835 -3.9569 13 8 0.3053 5.9525 -3.8395 14 7 1.3699 7.3626 -5.1813 15 6 0.8068 6.7941 -6.2945 16 1 0.1224 5.9651 -6.1900 17 6 1.1165 7.2844 -7.5572 18 7 1.9488 8.2933 -7.6844 19 14 0.3497 6.5093 -9.0741 20 1 -0.9263 7.1995 -9.3913 21 1 1.2823 6.6406 -10.2222 22 1 0.0834 5.0717 -8.8144 23 6 1.9830 7.2252 -0.3371 24 6 2.0928 5.9942 0.5816 25 1 3.1392 5.7373 0.7465 26 6 1.3964 6.2642 1.9168 27 6 2.2605 -1.3050 -0.0006 28 6 1.4517 -2.5877 -0.2045 29 6 2.0261 -2.2566 1.1744 30 1 -0.3634 0.0979 -1.0229 31 1 -0.3634 -0.9349 0.4267 32 1 -0.3634 0.8370 0.5964 33 1 3.2461 1.1552 0.1122 34 1 3.0500 3.5985 0.1639 35 1 0.6181 4.8872 -2.2313 36 1 2.3913 5.1218 -2.0977 37 1 2.7824 7.4179 -2.7954 38 1 1.4196 8.5568 -2.6785 39 1 1.9848 8.1069 -5.2753 40 1 2.1647 8.6358 -8.5659 41 1 2.9781 7.5592 -0.6308 42 1 1.4563 8.0279 0.1789 43 1 0.3493 6.5085 1.7376 44 1 1.4598 5.3764 2.5459 45 1 1.8838 7.1004 2.4183 46 1 3.2632 -1.2688 -0.4266 47 1 0.3746 -2.4876 -0.3387 48 1 1.9222 -3.3956 -0.7649 49 1 2.8745 -2.8467 1.5211 50 1 1.3266 -1.9389 1.9476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206321251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:52 Heat of formation + Delta-G solvation = -45.799377 kcal Electronic energy + Delta-G solvation = -28908.869979 eV Core-core repulsion = 24936.263330 eV Total energy + Delta-G solvation = -3972.606650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.38438 -40.51993 -39.39012 -38.64670 -36.13550 -35.48893 -34.12960 -33.63933 -33.29616 -30.36921 -29.05307 -28.20703 -26.81610 -25.74721 -24.63766 -23.22399 -22.61972 -21.69700 -21.19439 -21.05120 -19.90193 -19.43642 -18.14495 -17.74074 -17.52588 -16.88222 -16.54461 -16.37932 -16.24694 -15.84058 -15.64150 -15.55358 -15.11580 -14.81671 -14.54278 -14.44897 -14.20172 -14.00999 -13.89193 -13.62805 -13.53929 -13.14487 -12.99578 -12.93036 -12.85087 -12.49192 -12.47425 -12.45483 -12.26733 -12.16401 -12.09336 -11.86141 -11.85468 -11.68067 -11.50226 -11.34554 -10.65289 -10.29079 -10.10923 -10.02310 -9.74082 -9.33361 -8.49910 -5.98486 0.32314 1.34676 1.38357 1.51259 2.00791 2.13192 2.25726 2.27313 2.89100 2.99925 3.16550 3.32363 3.55000 3.61667 3.69212 3.85305 3.93947 3.94957 4.11759 4.13525 4.20156 4.26065 4.30103 4.36202 4.45547 4.52458 4.57386 4.64210 4.69327 4.72907 4.80350 4.88335 4.96336 4.98389 5.06197 5.07294 5.11198 5.13347 5.23626 5.24813 5.36907 5.38027 5.48876 5.52895 5.55187 5.82546 5.94515 6.11002 6.57701 6.61546 7.10112 7.31468 7.51882 8.09324 8.67535 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009594 B = 0.002728 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.907750 B =10260.556461 C =12671.059514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.002 3.998 3 C -0.236 4.236 4 C 0.535 3.465 5 O -0.580 6.580 6 N -0.706 5.706 7 C 0.151 3.849 8 H 0.076 0.924 9 C 0.039 3.961 10 N -0.515 5.515 11 C 0.050 3.950 12 C 0.434 3.566 13 O -0.617 6.617 14 N -0.571 5.571 15 C -0.333 4.333 16 H 0.074 0.926 17 C -0.011 4.011 18 N -0.918 5.918 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.267 1.267 22 H -0.276 1.276 23 C 0.037 3.963 24 C -0.095 4.095 25 H 0.107 0.893 26 C -0.135 4.135 27 C -0.146 4.146 28 C -0.175 4.175 29 C -0.153 4.153 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.397 0.603 40 H 0.279 0.721 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.129 0.871 47 H 0.096 0.904 48 H 0.113 0.887 49 H 0.119 0.881 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 -12.532 21.816 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.000 4.000 3 C -0.256 4.256 4 C 0.326 3.674 5 O -0.462 6.462 6 N -0.358 5.358 7 C 0.044 3.956 8 H 0.094 0.906 9 C -0.091 4.091 10 N -0.240 5.240 11 C -0.081 4.081 12 C 0.222 3.778 13 O -0.503 6.503 14 N -0.208 5.208 15 C -0.463 4.463 16 H 0.092 0.908 17 C -0.211 4.211 18 N -0.559 5.559 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.191 1.191 22 H -0.201 1.201 23 C -0.091 4.091 24 C -0.114 4.114 25 H 0.125 0.875 26 C -0.192 4.192 27 C -0.164 4.164 28 C -0.212 4.212 29 C -0.190 4.190 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.252 0.748 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.147 0.853 47 H 0.115 0.885 48 H 0.131 0.869 49 H 0.137 0.863 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.721 -12.874 21.611 26.038 hybrid contribution 0.935 0.214 -1.482 1.766 sum 7.656 -12.660 20.129 24.981 Atomic orbital electron populations 1.21086 0.92038 1.02484 1.02395 1.22007 0.95644 0.93701 0.88687 1.22357 1.01460 0.90296 1.11519 1.19137 0.86738 0.85523 0.76004 1.90785 1.17313 1.88148 1.49975 1.45726 1.13184 1.04552 1.72309 1.21804 0.96772 0.83344 0.93632 0.90622 1.23495 0.99531 0.88937 0.97095 1.64484 1.53199 1.03897 1.02399 1.22013 0.98111 0.99923 0.88080 1.20843 0.85634 0.86040 0.85294 1.90486 1.40774 1.32574 1.86477 1.41898 1.42129 1.32122 1.04699 1.19612 1.25632 1.15868 0.85183 0.90767 1.26015 0.97067 0.96714 1.01320 1.69661 1.34776 1.25466 1.26011 0.84956 0.78246 0.78257 0.77040 1.19577 1.19138 1.20088 1.23187 0.97483 0.98202 0.90209 1.22237 1.01020 0.92563 0.95596 0.87537 1.21779 1.00211 1.02493 0.94726 1.21333 1.00659 0.87726 1.06651 1.23175 1.00339 0.97302 1.00352 1.23076 1.04029 1.00721 0.91139 0.92170 0.90504 0.91249 0.82527 0.74757 0.91969 0.95146 0.90943 0.86811 0.76909 0.91198 0.91628 0.88548 0.93400 0.92183 0.89998 0.85300 0.88535 0.86859 0.86303 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 7.91 71.23 0.56 -2.42 16 2 C 0.00 0.03 5.81 -17.62 -0.10 -0.07 16 3 C -0.24 -5.03 9.67 23.43 0.23 -4.80 16 4 C 0.53 15.50 7.61 86.57 0.66 16.16 16 5 O -0.58 -22.27 12.92 -4.06 -0.05 -22.32 16 6 N -0.71 -17.07 5.17 -440.44 -2.28 -19.34 16 7 C 0.15 4.33 2.98 46.20 0.14 4.47 16 8 H 0.08 2.63 7.27 -2.39 -0.02 2.61 16 9 C 0.04 1.46 4.98 86.65 0.43 1.89 16 10 N -0.51 -17.83 5.26 -887.61 -4.67 -22.50 16 11 C 0.05 1.82 5.52 85.56 0.47 2.29 16 12 C 0.43 21.81 7.49 87.66 0.66 22.46 16 13 O -0.62 -36.27 13.10 -3.06 -0.04 -36.31 16 14 N -0.57 -30.43 5.29 -306.99 -1.62 -32.05 16 15 C -0.33 -19.64 9.68 84.04 0.81 -18.82 16 16 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 18 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 19 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.04 0.84 6.36 86.44 0.55 1.39 16 24 C -0.09 -1.86 3.32 -9.92 -0.03 -1.90 16 25 H 0.11 1.51 7.75 -2.39 -0.02 1.49 16 26 C -0.13 -2.22 8.89 71.98 0.64 -1.58 16 27 C -0.15 -2.09 6.01 -11.54 -0.07 -2.16 16 28 C -0.17 -2.16 9.76 30.60 0.30 -1.86 16 29 C -0.15 -1.62 10.10 30.60 0.31 -1.31 16 30 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 31 H 0.08 1.42 6.31 -2.39 -0.02 1.40 16 32 H 0.07 2.00 6.12 -2.39 -0.01 1.98 16 33 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.42 6.73 8.37 -92.71 -0.78 5.95 16 35 H 0.06 3.13 5.97 -2.39 -0.01 3.11 16 36 H 0.03 1.15 8.02 -2.39 -0.02 1.13 16 37 H 0.07 2.29 7.81 -2.39 -0.02 2.27 16 38 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16 40 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.07 1.27 7.57 -2.39 -0.02 1.25 16 42 H 0.10 1.97 7.68 -2.39 -0.02 1.95 16 43 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.10 1.31 6.42 -2.38 -0.02 1.29 16 48 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -78.59 401.13 -0.88 -79.47 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -0.55 Total: 43.26 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.02 Total: 13.58 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -8.29 Total: -123.98 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -0.09 Total: -58.63 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -78.59 -0.88 -79.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206321251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.668 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds