Wall clock time and date at job start Tue Mar 31 2020 18:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.34859 * 2 1 4 4 C 1.53995 * 110.30736 * 237.86188 * 2 1 3 5 5 N 1.47910 * 107.05539 * 242.30801 * 4 2 1 6 6 C 1.46894 * 110.99906 * 214.15463 * 5 4 2 7 7 C 1.50696 * 109.47196 * 300.98197 * 6 5 4 8 8 O 1.21285 * 120.00370 * 354.04437 * 7 6 5 9 9 N 1.34780 * 119.99910 * 174.03581 * 7 6 5 10 10 C 1.37099 * 119.99940 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99912 * 180.02562 * 10 9 7 13 13 N 1.31406 * 119.99925 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00017 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47444 * 89.99643 * 14 12 10 16 16 H 1.48501 * 109.46793 * 209.99996 * 14 12 10 17 17 H 1.48502 * 109.47091 * 329.99699 * 14 12 10 18 18 C 1.48536 * 105.81827 * 334.66751 * 5 4 2 19 19 C 1.54591 * 110.30942 * 122.14382 * 2 1 3 20 20 H 1.09002 * 110.87942 * 22.44039 * 19 2 1 21 21 N 1.46504 * 110.72042 * 259.23127 * 19 2 1 22 22 C 1.34776 * 119.99757 * 160.04670 * 21 19 2 23 23 O 1.21284 * 120.00179 * 359.97438 * 22 21 19 24 24 C 1.50703 * 120.00175 * 180.02562 * 22 21 19 25 25 H 1.09005 * 115.52247 * 325.49364 * 24 22 21 26 26 C 1.52995 * 117.44285 * 110.95993 * 24 22 21 27 27 H 1.08993 * 119.30288 * 356.30425 * 26 24 22 28 28 C 1.54273 * 118.19606 * 201.22356 * 26 24 22 29 29 C 1.54885 * 104.19576 * 272.21305 * 28 26 24 30 30 C 1.57041 * 102.88619 * 38.08701 * 29 28 26 31 31 C 1.53000 * 117.46353 * 180.02562 * 24 22 21 32 32 H 1.08997 * 119.29606 * 3.72727 * 31 24 22 33 33 H 1.09000 * 109.47098 * 297.85571 * 1 2 3 34 34 H 1.09001 * 109.47027 * 57.85956 * 1 2 3 35 35 H 1.09002 * 109.46693 * 177.85874 * 1 2 3 36 36 H 1.08996 * 109.92197 * 122.95896 * 4 2 1 37 37 H 1.08997 * 109.91839 * 1.65760 * 4 2 1 38 38 H 1.09005 * 109.46964 * 60.98270 * 6 5 4 39 39 H 1.09000 * 109.47280 * 180.97842 * 6 5 4 40 40 H 0.97003 * 119.99991 * 0.02562 * 9 7 6 41 41 H 0.96998 * 120.00461 * 179.97438 * 13 12 10 42 42 H 1.08995 * 110.66790 * 280.77569 * 18 5 4 43 43 H 1.08994 * 110.66733 * 157.64125 * 18 5 4 44 44 H 0.97001 * 119.99976 * 340.04577 * 21 19 2 45 45 H 1.09002 * 110.48462 * 30.89304 * 28 26 24 46 46 H 1.09000 * 110.48139 * 153.40164 * 28 26 24 47 47 H 1.09000 * 110.75625 * 156.25869 * 29 28 26 48 48 H 1.09005 * 110.75641 * 279.44477 * 29 28 26 49 49 H 1.08999 * 111.60563 * 203.34679 * 30 29 28 50 50 H 1.09005 * 110.34221 * 80.03657 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8313 -1.9236 -0.7083 6 6 3.9751 -2.2262 -1.5789 7 6 3.4811 -2.5300 -2.9698 8 8 2.2903 -2.6041 -3.1878 9 7 4.3626 -2.7194 -3.9716 10 6 3.9132 -2.9963 -5.2369 11 1 2.8528 -3.0623 -5.4310 12 6 4.8220 -3.1920 -6.2697 13 7 4.3913 -3.4579 -7.4823 14 14 6.6560 -3.0785 -5.9339 15 1 7.1742 -4.4181 -5.5571 16 1 7.3543 -2.6033 -7.1553 17 1 6.8976 -2.1237 -4.8225 18 6 3.2856 -1.5348 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3187 -1.4682 1.6059 21 7 2.4866 0.1571 2.2801 22 6 2.6010 -0.2735 3.5521 23 8 2.3558 -1.4294 3.8255 24 6 3.0325 0.6817 4.6351 25 1 3.7542 1.4403 4.3320 26 6 1.9898 1.0780 5.6822 27 1 0.9675 0.7138 5.5815 28 6 2.2132 2.3818 6.4762 29 6 3.0753 1.9462 7.6870 30 6 4.0444 0.8804 7.0616 31 6 3.1437 0.1312 6.0583 32 1 2.9713 -0.9306 6.2344 33 1 -0.3633 0.4802 0.9086 34 1 -0.3633 0.5467 -0.8702 35 1 -0.3633 -1.0270 -0.0384 36 1 2.7162 -0.1226 -1.8114 37 1 1.2327 -1.1175 -1.8346 38 1 4.6448 -1.3668 -1.6108 39 1 4.5115 -3.0904 -1.1870 40 1 5.3150 -2.6604 -3.7973 41 1 5.0256 -3.5942 -8.2034 42 1 4.1564 -0.8818 0.5940 43 1 3.5047 -2.4181 1.2511 44 1 2.6824 1.0816 2.0615 45 1 2.7493 3.1111 5.8689 46 1 1.2607 2.7921 6.8114 47 1 3.6391 2.7905 8.0834 48 1 2.4535 1.5001 8.4633 49 1 4.4272 0.1940 7.8168 50 1 4.8657 1.3738 6.5419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206774480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:25 Heat of formation + Delta-G solvation = -39.755503 kcal Electronic energy + Delta-G solvation = -28734.872851 eV Core-core repulsion = 24762.528284 eV Total energy + Delta-G solvation = -3972.344567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79424 -39.67489 -38.53054 -37.62047 -34.63710 -33.85633 -32.74306 -32.04976 -31.64681 -29.14646 -28.70104 -27.25402 -25.63989 -24.61052 -23.41061 -21.50656 -20.94028 -20.80834 -20.13832 -19.94173 -19.32815 -18.28047 -17.67878 -16.73979 -15.93394 -15.69884 -15.65725 -15.24720 -14.98775 -14.79962 -14.35732 -14.04623 -13.73687 -13.66548 -13.57978 -13.49325 -13.24869 -13.03450 -12.85071 -12.41703 -12.35589 -11.96581 -11.94850 -11.82084 -11.75862 -11.59841 -11.43965 -11.33515 -11.26795 -10.99920 -10.88442 -10.64899 -10.59892 -10.53205 -10.30742 -9.97943 -9.92149 -9.55533 -9.26352 -8.56295 -8.18881 -8.06029 -6.31210 -3.82464 2.19411 2.77869 3.01811 3.06834 3.14674 3.30705 3.73980 3.96993 4.09810 4.17224 4.22396 4.27480 4.38349 4.59887 4.68404 4.71756 4.77354 4.84640 4.86462 4.93448 4.96927 5.10508 5.20976 5.24693 5.24982 5.33156 5.37902 5.40813 5.55086 5.56420 5.60386 5.62283 5.68911 5.73949 5.80501 5.81849 5.86766 5.92767 5.93784 5.96164 6.05265 6.18052 6.33816 6.48275 7.09838 7.11159 7.27154 7.58253 8.00866 8.14177 8.60044 8.95101 9.42326 9.83056 10.81897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.002014 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.126664 B =13901.605929 C =14627.584852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.076 0.924 4 C 0.049 3.951 5 N -0.489 5.489 6 C 0.035 3.965 7 C 0.452 3.548 8 O -0.559 6.559 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.024 3.976 19 C 0.147 3.853 20 H 0.105 0.895 21 N -0.717 5.717 22 C 0.544 3.456 23 O -0.534 6.534 24 C -0.165 4.165 25 H 0.120 0.880 26 C -0.137 4.137 27 H 0.115 0.885 28 C -0.096 4.096 29 C -0.123 4.123 30 C -0.098 4.098 31 C -0.131 4.131 32 H 0.122 0.878 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.400 0.600 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 14.681 28.246 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.079 4.079 5 N -0.214 5.214 6 C -0.097 4.097 7 C 0.237 3.763 8 O -0.440 6.440 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.138 0.862 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C -0.105 4.105 19 C 0.042 3.958 20 H 0.123 0.877 21 N -0.368 5.368 22 C 0.330 3.670 23 O -0.410 6.410 24 C -0.186 4.186 25 H 0.137 0.863 26 C -0.156 4.156 27 H 0.133 0.867 28 C -0.134 4.134 29 C -0.161 4.161 30 C -0.135 4.135 31 C -0.149 4.149 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.234 0.766 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.126 13.258 28.054 31.050 hybrid contribution 2.355 1.199 -0.338 2.664 sum 1.229 14.457 27.716 31.284 Atomic orbital electron populations 1.21809 0.93631 1.02857 1.01441 1.22320 0.97314 0.98891 0.94312 0.90607 1.22985 0.99552 0.90161 0.95166 1.64517 1.19780 1.36450 1.00612 1.22132 0.92652 1.01306 0.93629 1.19601 0.87118 0.84258 0.85287 1.90546 1.15622 1.54580 1.83285 1.42210 1.07085 1.64666 1.09123 1.19427 0.96728 1.45025 0.82079 0.86248 1.25033 0.98456 0.97576 0.95096 1.69616 1.34979 1.47279 1.00256 0.86677 0.85429 0.78849 0.78456 1.19572 1.20200 1.19607 1.23637 0.96118 0.99519 0.91258 1.21984 0.96472 0.91066 0.86317 0.87724 1.45973 1.69661 1.13879 1.07332 1.19611 0.76765 0.87932 0.82728 1.90726 1.49380 1.18606 1.82308 1.22387 1.03936 1.01964 0.90299 0.86256 1.23263 0.95257 0.97573 0.99521 0.86712 1.21991 1.00397 0.95161 0.95811 1.23056 0.97251 0.98210 0.97562 1.22393 0.96967 0.97016 0.97133 1.23264 0.99492 0.99787 0.92363 0.86000 0.92975 0.92086 0.91595 0.93926 0.87782 0.93427 0.88891 0.79744 0.91626 0.93770 0.89524 0.76563 0.91148 0.90774 0.91218 0.91051 0.90576 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.89 37.16 0.33 -1.18 16 2 C -0.11 -1.25 3.32 -89.26 -0.30 -1.54 16 3 H 0.08 0.72 7.72 -51.93 -0.40 0.32 16 4 C 0.05 0.77 5.05 -2.75 -0.01 0.76 16 5 N -0.49 -8.09 5.12 -231.89 -1.19 -9.27 16 6 C 0.03 0.60 5.30 -4.98 -0.03 0.57 16 7 C 0.45 10.32 7.39 -10.99 -0.08 10.24 16 8 O -0.56 -14.83 14.10 5.55 0.08 -14.75 16 9 N -0.59 -14.15 5.09 -10.96 -0.06 -14.21 16 10 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 11 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.77 13.96 55.50 0.77 -24.99 16 14 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 18 C 0.02 0.32 6.24 -1.89 -0.01 0.31 16 19 C 0.15 1.74 2.89 -66.07 -0.19 1.55 16 20 H 0.10 1.46 7.42 -51.93 -0.39 1.07 16 21 N -0.72 -6.74 5.20 -52.00 -0.27 -7.01 16 22 C 0.54 5.92 7.61 -10.98 -0.08 5.83 16 23 O -0.53 -8.01 16.05 5.55 0.09 -7.92 16 24 C -0.16 -1.29 5.73 -91.77 -0.53 -1.82 16 25 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 26 C -0.14 -0.97 6.64 -89.47 -0.59 -1.56 16 27 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 28 C -0.10 -0.49 6.63 -25.07 -0.17 -0.65 16 29 C -0.12 -0.59 6.96 -23.55 -0.16 -0.75 16 30 C -0.10 -0.56 6.79 -23.89 -0.16 -0.72 16 31 C -0.13 -1.03 6.34 -89.48 -0.57 -1.59 16 32 H 0.12 1.17 7.78 -51.93 -0.40 0.77 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 37 H 0.10 1.93 6.57 -51.93 -0.34 1.59 16 38 H 0.05 0.72 8.00 -51.93 -0.42 0.31 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.04 0.54 7.95 -51.93 -0.41 0.13 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.40 2.66 8.33 -40.82 -0.34 2.32 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -33.92 398.20 -10.47 -44.39 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.39 Total: 11.31 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -2.80 Total: 1.72 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.74 Total: -55.48 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.92 -10.47 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206774480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.634 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds