Wall clock time and date at job start Tue Mar 31 2020 18:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.34859 * 2 1 4 4 C 1.53995 * 110.30736 * 237.86188 * 2 1 3 5 5 N 1.47910 * 107.05539 * 242.30801 * 4 2 1 6 6 C 1.46894 * 110.99906 * 214.15463 * 5 4 2 7 7 C 1.50696 * 109.47196 * 300.98197 * 6 5 4 8 8 O 1.21285 * 120.00370 * 354.04437 * 7 6 5 9 9 N 1.34780 * 119.99910 * 174.03581 * 7 6 5 10 10 C 1.37099 * 119.99940 * 179.97438 * 9 7 6 11 11 H 1.08003 * 120.00170 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99912 * 180.02562 * 10 9 7 13 13 N 1.31406 * 119.99925 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00017 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47444 * 89.99643 * 14 12 10 16 16 H 1.48501 * 109.46793 * 209.99996 * 14 12 10 17 17 H 1.48502 * 109.47091 * 329.99699 * 14 12 10 18 18 C 1.48536 * 105.81827 * 334.66751 * 5 4 2 19 19 C 1.54591 * 110.30942 * 122.14382 * 2 1 3 20 20 H 1.09002 * 110.87942 * 22.44039 * 19 2 1 21 21 N 1.46504 * 110.72042 * 259.23127 * 19 2 1 22 22 C 1.34776 * 119.99757 * 160.04670 * 21 19 2 23 23 O 1.21284 * 120.00179 * 359.97438 * 22 21 19 24 24 C 1.50703 * 120.00175 * 180.02562 * 22 21 19 25 25 H 1.09005 * 115.52247 * 325.49364 * 24 22 21 26 26 C 1.52995 * 117.44285 * 110.95993 * 24 22 21 27 27 H 1.08993 * 119.30288 * 356.30425 * 26 24 22 28 28 C 1.54273 * 118.19606 * 201.22356 * 26 24 22 29 29 C 1.54885 * 104.19576 * 272.21305 * 28 26 24 30 30 C 1.57041 * 102.88619 * 38.08701 * 29 28 26 31 31 C 1.53000 * 117.46353 * 180.02562 * 24 22 21 32 32 H 1.08997 * 119.29606 * 3.72727 * 31 24 22 33 33 H 1.09000 * 109.47098 * 297.85571 * 1 2 3 34 34 H 1.09001 * 109.47027 * 57.85956 * 1 2 3 35 35 H 1.09002 * 109.46693 * 177.85874 * 1 2 3 36 36 H 1.08996 * 109.92197 * 122.95896 * 4 2 1 37 37 H 1.08997 * 109.91839 * 1.65760 * 4 2 1 38 38 H 1.09005 * 109.46964 * 60.98270 * 6 5 4 39 39 H 1.09000 * 109.47280 * 180.97842 * 6 5 4 40 40 H 0.97003 * 119.99991 * 0.02562 * 9 7 6 41 41 H 0.96998 * 120.00461 * 179.97438 * 13 12 10 42 42 H 1.08995 * 110.66790 * 280.77569 * 18 5 4 43 43 H 1.08994 * 110.66733 * 157.64125 * 18 5 4 44 44 H 0.97001 * 119.99976 * 340.04577 * 21 19 2 45 45 H 1.09002 * 110.48462 * 30.89304 * 28 26 24 46 46 H 1.09000 * 110.48139 * 153.40164 * 28 26 24 47 47 H 1.09000 * 110.75625 * 156.25869 * 29 28 26 48 48 H 1.09005 * 110.75641 * 279.44477 * 29 28 26 49 49 H 1.08999 * 111.60563 * 203.34679 * 30 29 28 50 50 H 1.09005 * 110.34221 * 80.03657 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8313 -1.9236 -0.7083 6 6 3.9751 -2.2262 -1.5789 7 6 3.4811 -2.5300 -2.9698 8 8 2.2903 -2.6041 -3.1878 9 7 4.3626 -2.7194 -3.9716 10 6 3.9132 -2.9963 -5.2369 11 1 2.8528 -3.0623 -5.4310 12 6 4.8220 -3.1920 -6.2697 13 7 4.3913 -3.4579 -7.4823 14 14 6.6560 -3.0785 -5.9339 15 1 7.1742 -4.4181 -5.5571 16 1 7.3543 -2.6033 -7.1553 17 1 6.8976 -2.1237 -4.8225 18 6 3.2856 -1.5348 0.6514 19 6 2.0666 -0.7714 1.2276 20 1 1.3187 -1.4682 1.6059 21 7 2.4866 0.1571 2.2801 22 6 2.6010 -0.2735 3.5521 23 8 2.3558 -1.4294 3.8255 24 6 3.0325 0.6817 4.6351 25 1 3.7542 1.4403 4.3320 26 6 1.9898 1.0780 5.6822 27 1 0.9675 0.7138 5.5815 28 6 2.2132 2.3818 6.4762 29 6 3.0753 1.9462 7.6870 30 6 4.0444 0.8804 7.0616 31 6 3.1437 0.1312 6.0583 32 1 2.9713 -0.9306 6.2344 33 1 -0.3633 0.4802 0.9086 34 1 -0.3633 0.5467 -0.8702 35 1 -0.3633 -1.0270 -0.0384 36 1 2.7162 -0.1226 -1.8114 37 1 1.2327 -1.1175 -1.8346 38 1 4.6448 -1.3668 -1.6108 39 1 4.5115 -3.0904 -1.1870 40 1 5.3150 -2.6604 -3.7973 41 1 5.0256 -3.5942 -8.2034 42 1 4.1564 -0.8818 0.5940 43 1 3.5047 -2.4181 1.2511 44 1 2.6824 1.0816 2.0615 45 1 2.7493 3.1111 5.8689 46 1 1.2607 2.7921 6.8114 47 1 3.6391 2.7905 8.0834 48 1 2.4535 1.5001 8.4633 49 1 4.4272 0.1940 7.8168 50 1 4.8657 1.3738 6.5419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206774480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:24 Heat of formation + Delta-G solvation = -65.186335 kcal Electronic energy + Delta-G solvation = -28735.975615 eV Core-core repulsion = 24762.528284 eV Total energy + Delta-G solvation = -3973.447331 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60963 -40.82764 -39.80413 -38.81587 -36.13050 -35.47613 -33.89347 -33.63196 -32.56548 -30.32401 -29.12796 -28.59354 -26.95520 -25.92188 -24.52047 -22.47020 -21.80645 -21.57895 -21.25952 -20.84498 -20.59442 -20.14503 -18.46951 -17.76603 -17.68834 -16.80432 -16.70897 -16.44476 -16.15888 -15.79328 -15.44534 -15.30528 -15.06616 -14.85244 -14.71238 -14.51502 -14.30269 -14.01463 -13.85056 -13.77435 -13.68820 -13.56302 -13.02459 -12.98194 -12.50954 -12.44944 -12.42212 -12.25451 -12.22219 -11.98731 -11.97146 -11.90739 -11.70331 -11.67235 -11.50661 -11.12118 -11.00585 -10.60734 -10.43968 -10.25550 -10.13406 -9.38013 -8.42154 -6.02944 1.28642 1.34608 1.39704 1.43095 1.92754 1.95137 2.21831 2.65089 2.73630 3.12989 3.16584 3.42645 3.56647 3.60098 3.70832 3.77021 3.86178 4.05488 4.10694 4.21270 4.22236 4.28955 4.29710 4.33848 4.43772 4.50140 4.50534 4.52591 4.61777 4.68228 4.79485 4.84622 4.85969 4.93339 5.01043 5.03862 5.15318 5.16925 5.23211 5.23817 5.29237 5.30664 5.42433 5.51223 5.51845 5.83720 5.91281 5.98788 6.51790 6.58297 6.86914 7.21601 7.37771 7.94457 8.75376 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.002014 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.126664 B =13901.605929 C =14627.584852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.109 0.891 4 C 0.050 3.950 5 N -0.516 5.516 6 C 0.046 3.954 7 C 0.450 3.550 8 O -0.604 6.604 9 N -0.591 5.591 10 C -0.327 4.327 11 H 0.056 0.944 12 C -0.015 4.015 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.232 1.232 18 C 0.031 3.969 19 C 0.155 3.845 20 H 0.079 0.921 21 N -0.701 5.701 22 C 0.540 3.460 23 O -0.582 6.582 24 C -0.160 4.160 25 H 0.148 0.852 26 C -0.132 4.132 27 H 0.101 0.899 28 C -0.091 4.091 29 C -0.121 4.121 30 C -0.094 4.094 31 C -0.145 4.145 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.418 0.582 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 17.624 30.938 35.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.127 0.873 4 C -0.078 4.078 5 N -0.241 5.241 6 C -0.085 4.085 7 C 0.238 3.762 8 O -0.488 6.488 9 N -0.233 5.233 10 C -0.456 4.456 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.574 5.574 14 Si 0.784 3.216 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.155 1.155 18 C -0.098 4.098 19 C 0.049 3.951 20 H 0.097 0.903 21 N -0.352 5.352 22 C 0.328 3.672 23 O -0.462 6.462 24 C -0.181 4.181 25 H 0.166 0.834 26 C -0.151 4.151 27 H 0.120 0.880 28 C -0.129 4.129 29 C -0.158 4.158 30 C -0.131 4.131 31 C -0.163 4.163 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.134 0.866 40 H 0.224 0.776 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.256 0.744 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.109 16.246 30.772 34.861 hybrid contribution 1.165 0.213 -1.188 1.677 sum 3.273 16.459 29.583 34.012 Atomic orbital electron populations 1.21783 0.93400 1.01771 1.02582 1.22230 0.97428 0.99756 0.91911 0.87286 1.22861 0.98256 0.90157 0.96523 1.64403 1.20183 1.37645 1.01909 1.22055 0.93227 1.03630 0.89617 1.20756 0.86423 0.81837 0.87179 1.90540 1.17953 1.55770 1.84509 1.42022 1.08219 1.65253 1.07770 1.18992 0.94416 1.47363 0.84855 0.92614 1.26102 1.05130 0.96030 0.94073 1.69798 1.37677 1.48158 1.01764 0.85374 0.76326 0.80221 0.79659 1.18313 1.19886 1.15497 1.23597 0.97367 0.99737 0.89089 1.21669 0.95405 0.91144 0.86861 0.90264 1.45775 1.68808 1.14317 1.06339 1.20181 0.75759 0.87741 0.83489 1.90714 1.51517 1.20908 1.83054 1.22399 1.04807 1.01727 0.89162 0.83414 1.23335 0.94322 0.98518 0.98908 0.88043 1.22024 1.01092 0.94111 0.95624 1.23062 0.97061 0.98349 0.97345 1.22412 0.97008 0.97083 0.96604 1.23295 1.01010 0.98904 0.93137 0.88702 0.90965 0.91772 0.93838 0.94166 0.91845 0.89969 0.86629 0.77563 0.91136 0.91411 0.90558 0.74389 0.89750 0.90050 0.89623 0.91353 0.90515 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.89 71.98 0.64 -2.27 16 2 C -0.09 -2.00 3.32 -9.91 -0.03 -2.03 16 3 H 0.11 1.65 7.72 -2.39 -0.02 1.63 16 4 C 0.05 1.56 5.05 86.45 0.44 1.99 16 5 N -0.52 -16.66 5.12 -887.57 -4.54 -21.20 16 6 C 0.05 1.50 5.30 85.56 0.45 1.95 16 7 C 0.45 20.74 7.39 87.66 0.65 21.39 16 8 O -0.60 -33.73 14.10 -3.05 -0.04 -33.77 16 9 N -0.59 -28.18 5.09 -306.98 -1.56 -29.74 16 10 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 11 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 12 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 13 N -0.93 -56.47 13.96 21.66 0.30 -56.17 16 14 Si 0.96 38.94 27.74 68.60 1.90 40.85 16 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 17 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 18 C 0.03 0.77 6.24 86.65 0.54 1.31 16 19 C 0.16 3.47 2.89 46.19 0.13 3.60 16 20 H 0.08 2.23 7.42 -2.39 -0.02 2.22 16 21 N -0.70 -11.36 5.20 -436.83 -2.27 -13.63 16 22 C 0.54 10.99 7.61 87.66 0.67 11.66 16 23 O -0.58 -17.61 16.05 -3.04 -0.05 -17.66 16 24 C -0.16 -2.14 5.73 -11.54 -0.07 -2.21 16 25 H 0.15 1.13 8.14 -2.38 -0.02 1.11 16 26 C -0.13 -1.63 6.64 -10.05 -0.07 -1.70 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 C -0.09 -0.64 6.63 31.67 0.21 -0.43 16 29 C -0.12 -0.81 6.96 32.66 0.23 -0.58 16 30 C -0.09 -0.86 6.79 32.44 0.22 -0.64 16 31 C -0.14 -2.12 6.34 -10.06 -0.06 -2.18 16 32 H 0.09 1.90 7.78 -2.39 -0.02 1.88 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 1.24 7.71 -2.39 -0.02 1.22 16 37 H 0.06 2.48 6.57 -2.39 -0.02 2.47 16 38 H 0.08 2.15 8.00 -2.38 -0.02 2.13 16 39 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.39 15.38 5.76 -92.71 -0.53 14.85 16 41 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.07 1.39 7.95 -2.39 -0.02 1.37 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.42 3.85 8.33 -92.71 -0.77 3.08 16 45 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -81.76 398.20 -1.41 -83.17 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -0.42 Total: 37.07 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.27 Total: 11.09 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -8.08 Total: -120.75 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.85 kcal Total: -81.76 -1.41 -83.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206774480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.987 kcal (2) G-P(sol) polarization free energy of solvation -81.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds