Wall clock time and date at job start Tue Mar 31 2020 18:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.64644 * 2 1 4 4 C 1.54940 * 110.87483 * 236.73558 * 2 1 3 5 5 N 1.48527 * 103.22881 * 204.15924 * 4 2 1 6 6 C 1.46891 * 111.00315 * 159.72229 * 5 4 2 7 7 C 1.50702 * 109.47380 * 169.99758 * 6 5 4 8 8 O 1.21294 * 119.99966 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00162 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99966 * 179.97438 * 9 7 6 11 11 H 1.07993 * 120.00064 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99700 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00254 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99802 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46630 * 60.00657 * 14 12 10 16 16 H 1.48500 * 109.46754 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47276 * 300.00556 * 14 12 10 18 18 C 1.48132 * 105.82522 * 39.26376 * 5 4 2 19 19 C 1.53993 * 106.94097 * 334.59187 * 18 5 4 20 20 H 1.09005 * 110.30602 * 120.26616 * 19 18 5 21 21 N 1.46499 * 110.31159 * 242.33342 * 19 18 5 22 22 C 1.34781 * 120.00110 * 272.21562 * 21 19 18 23 23 O 1.21282 * 119.99655 * 359.97438 * 22 21 19 24 24 C 1.50699 * 120.00004 * 179.97438 * 22 21 19 25 25 C 1.53005 * 110.43284 * 60.89717 * 24 22 21 26 26 C 1.51094 * 110.38791 * 298.54866 * 24 22 21 27 27 C 1.30525 * 111.10287 * 257.62114 * 26 24 22 28 28 C 1.51104 * 111.10650 * 0.02562 * 27 26 24 29 29 C 1.54637 * 104.82203 * 343.50481 * 28 27 26 30 30 H 1.09011 * 109.47093 * 296.85071 * 1 2 3 31 31 H 1.09000 * 109.47348 * 56.84679 * 1 2 3 32 32 H 1.09003 * 109.47435 * 176.85390 * 1 2 3 33 33 H 1.08996 * 110.66803 * 322.59505 * 4 2 1 34 34 H 1.09001 * 110.66091 * 85.72155 * 4 2 1 35 35 H 1.08996 * 109.47318 * 290.00239 * 6 5 4 36 36 H 1.09008 * 109.46930 * 50.00080 * 6 5 4 37 37 H 0.97003 * 120.00025 * 0.02562 * 9 7 6 38 38 H 0.97005 * 120.00430 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.95090 * 215.28883 * 18 5 4 40 40 H 1.09000 * 109.99267 * 93.92063 * 18 5 4 41 41 H 0.97002 * 119.99892 * 92.20739 * 21 19 18 42 42 H 1.09004 * 109.47134 * 299.10529 * 25 24 22 43 43 H 1.09004 * 109.47261 * 59.10048 * 25 24 22 44 44 H 1.08996 * 109.47061 * 179.10520 * 25 24 22 45 45 H 1.07999 * 124.45034 * 77.64874 * 26 24 22 46 46 H 1.08001 * 124.45397 * 180.02562 * 27 26 24 47 47 H 1.09002 * 110.38900 * 102.37280 * 28 27 26 48 48 H 1.09000 * 110.38594 * 224.63979 * 28 27 26 49 49 H 1.08997 * 111.03562 * 142.72145 * 29 28 27 50 50 H 1.09006 * 111.03454 * 266.65732 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7941 -1.2105 5 7 3.4358 -1.2052 -0.7584 6 6 3.9292 -2.3451 -1.5427 7 6 5.3851 -2.5773 -1.2303 8 8 5.9554 -1.8637 -0.4323 9 7 6.0531 -3.5786 -1.8367 10 6 7.3776 -3.7895 -1.5529 11 1 7.8857 -3.1536 -0.8431 12 6 8.0661 -4.8221 -2.1777 13 7 7.4478 -5.5961 -3.0411 14 14 9.8712 -5.1090 -1.7916 15 1 10.0275 -5.3984 -0.3434 16 1 10.3696 -6.2619 -2.5838 17 1 10.6512 -3.8947 -2.1408 18 6 3.2916 -1.5682 0.6705 19 6 2.0771 -0.7907 1.2106 20 1 1.3212 -1.4816 1.5840 21 7 2.4932 0.1289 2.2725 22 6 2.5459 -0.2968 3.5502 23 8 2.2484 -1.4410 3.8209 24 6 2.9745 0.6490 4.6424 25 6 2.0177 1.8401 4.7234 26 6 4.3882 1.1248 4.4018 27 6 5.2328 0.4991 5.1758 28 6 4.5231 -0.4988 6.0610 29 6 3.0330 -0.0898 6.0028 30 1 -0.3634 0.4642 0.9170 31 1 -0.3634 0.5620 -0.8604 32 1 -0.3634 -1.0261 -0.0564 33 1 1.4622 -1.6675 -1.4126 34 1 2.1480 -0.1556 -2.0915 35 1 3.3562 -3.2366 -1.2879 36 1 3.8153 -2.1313 -2.6055 37 1 5.5968 -4.1495 -2.4746 38 1 7.9286 -6.3168 -3.4776 39 1 4.1891 -1.2828 1.2192 40 1 3.1192 -2.6401 0.7671 41 1 2.7308 1.0440 2.0559 42 1 2.0311 2.3820 3.7776 43 1 1.0076 1.4820 4.9226 44 1 2.3326 2.5051 5.5276 45 1 4.6637 1.8834 3.6842 46 1 6.2989 0.6719 5.1826 47 1 4.6548 -1.5097 5.6752 48 1 4.8956 -0.4318 7.0832 49 1 2.3862 -0.9671 6.0019 50 1 2.7790 0.5808 6.8238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208321566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:38 Heat of formation + Delta-G solvation = -51.557943 kcal Electronic energy + Delta-G solvation = -29794.986570 eV Core-core repulsion = 25822.130210 eV Total energy + Delta-G solvation = -3972.856360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78068 -39.35191 -37.91517 -37.20483 -34.49868 -33.80281 -32.70903 -31.61818 -31.16981 -29.18555 -28.66522 -27.31833 -25.46339 -25.08369 -23.96549 -22.39362 -21.05502 -20.58239 -19.87400 -19.01812 -18.77951 -17.79015 -17.20549 -16.69023 -15.90002 -15.70130 -15.37920 -15.08221 -14.62290 -14.45646 -14.43306 -13.92993 -13.72757 -13.61527 -13.30161 -13.26344 -13.07480 -12.65091 -12.50474 -12.33837 -12.10715 -12.03948 -11.96988 -11.85779 -11.49621 -11.44172 -11.31906 -11.19428 -11.13321 -11.01205 -10.95845 -10.85609 -10.75474 -10.41258 -10.17367 -10.00448 -9.44447 -9.02025 -8.96435 -8.46474 -7.95109 -7.89235 -6.37331 -3.77870 2.03224 2.70644 3.17179 3.22945 3.27932 3.32564 3.95879 4.04532 4.26742 4.27849 4.40163 4.44800 4.66519 4.68568 4.83672 4.91453 5.06167 5.10477 5.19418 5.28494 5.31008 5.33251 5.37865 5.40554 5.46958 5.51125 5.54780 5.65610 5.67701 5.75136 5.77002 5.81219 5.82493 5.85601 5.91901 5.94332 6.03100 6.09605 6.14502 6.32295 6.34332 6.35449 6.64950 6.70933 7.14806 7.23161 7.51170 7.58957 8.10623 8.23930 8.67115 9.22860 9.59593 10.12135 10.80611 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003130 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.118079 B = 8942.604455 C =10934.437384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.037 3.963 5 N -0.490 5.490 6 C 0.036 3.964 7 C 0.446 3.554 8 O -0.576 6.576 9 N -0.567 5.567 10 C -0.298 4.298 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.036 3.964 19 C 0.138 3.862 20 H 0.093 0.907 21 N -0.712 5.712 22 C 0.531 3.469 23 O -0.538 6.538 24 C -0.058 4.058 25 C -0.133 4.133 26 C -0.168 4.168 27 C -0.142 4.142 28 C -0.106 4.106 29 C -0.107 4.107 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.400 0.600 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.090 0.910 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.881 14.112 11.193 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.091 4.091 5 N -0.214 5.214 6 C -0.096 4.096 7 C 0.231 3.769 8 O -0.459 6.459 9 N -0.204 5.204 10 C -0.427 4.427 11 H 0.119 0.881 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.093 4.093 19 C 0.033 3.967 20 H 0.111 0.889 21 N -0.363 5.363 22 C 0.317 3.683 23 O -0.415 6.415 24 C -0.061 4.061 25 C -0.191 4.191 26 C -0.186 4.186 27 C -0.160 4.160 28 C -0.143 4.143 29 C -0.145 4.145 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.109 0.891 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.254 13.993 11.740 23.169 hybrid contribution 0.395 -0.887 -0.533 1.108 sum -13.859 13.107 11.206 22.123 Atomic orbital electron populations 1.21772 0.94058 1.02182 1.01923 1.22319 0.95609 1.00048 0.93884 0.89351 1.23325 0.89728 0.98495 0.97592 1.64568 1.20943 1.33837 1.02012 1.22089 0.96193 0.92376 0.98958 1.19721 0.87775 0.83827 0.85604 1.90509 1.69375 1.48551 1.37514 1.41847 1.10891 1.28299 1.39336 1.19635 0.85574 1.13863 1.23639 0.88064 1.25239 1.00389 0.96024 0.96298 1.69603 1.37547 1.19341 1.28037 0.85935 0.82100 0.77797 0.78488 1.19942 1.20992 1.19918 1.23332 0.98573 0.97774 0.89577 1.21973 0.96352 0.91635 0.86783 0.88916 1.45987 1.68820 1.15127 1.06378 1.20327 0.76394 0.88228 0.83325 1.90677 1.48800 1.19277 1.82712 1.20678 0.95183 0.95333 0.94907 1.21775 0.98449 0.96201 1.02657 1.23014 0.92894 1.01495 1.01201 1.23419 0.99451 0.95951 0.97213 1.21427 0.94211 0.99238 0.99379 1.22525 0.97286 1.00653 0.94002 0.92431 0.92107 0.92416 0.93553 0.89692 0.93167 0.89276 0.77555 0.91886 0.88643 0.93615 0.76506 0.92087 0.92066 0.91308 0.85195 0.85323 0.90045 0.90960 0.89132 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 2 C -0.10 -1.03 3.36 -88.76 -0.30 -1.33 16 3 H 0.09 0.86 7.75 -51.93 -0.40 0.46 16 4 C 0.04 0.45 5.97 -1.90 -0.01 0.44 16 5 N -0.49 -8.25 4.91 -231.70 -1.14 -9.39 16 6 C 0.04 0.66 5.28 -4.98 -0.03 0.63 16 7 C 0.45 10.87 7.61 -10.98 -0.08 10.78 16 8 O -0.58 -16.03 14.87 5.55 0.08 -15.94 16 9 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 10 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 14 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.04 0.62 5.67 -2.63 -0.01 0.61 16 19 C 0.14 1.80 2.89 -66.57 -0.19 1.61 16 20 H 0.09 1.29 7.31 -51.93 -0.38 0.91 16 21 N -0.71 -8.46 4.87 -52.49 -0.26 -8.72 16 22 C 0.53 7.11 6.54 -10.98 -0.07 7.04 16 23 O -0.54 -9.20 15.12 5.56 0.08 -9.12 16 24 C -0.06 -0.60 0.73 -155.60 -0.11 -0.71 16 25 C -0.13 -1.00 8.42 37.16 0.31 -0.69 16 26 C -0.17 -1.76 9.29 -35.70 -0.33 -2.09 16 27 C -0.14 -1.55 10.78 -35.70 -0.38 -1.94 16 28 C -0.11 -1.14 6.80 -26.82 -0.18 -1.32 16 29 C -0.11 -1.11 6.07 -24.86 -0.15 -1.26 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 33 H 0.05 0.53 7.91 -51.93 -0.41 0.12 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.86 7.74 -51.93 -0.40 0.46 16 36 H 0.09 1.46 8.08 -51.92 -0.42 1.04 16 37 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.10 1.97 7.32 -51.93 -0.38 1.59 16 40 H 0.05 0.84 7.53 -51.93 -0.39 0.45 16 41 H 0.40 3.87 7.89 -40.82 -0.32 3.55 16 42 H 0.06 0.39 7.74 -51.93 -0.40 -0.01 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16 50 H 0.08 0.63 7.91 -51.93 -0.41 0.21 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -33.96 401.39 -9.32 -43.28 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -8.34 Total: 13.71 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.45 Total: 2.80 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.73 Total: -57.28 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: 0.17 Total: -25.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.96 -9.32 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208321566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.273 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds