Wall clock time and date at job start Tue Mar 31 2020 18:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.64644 * 2 1 4 4 C 1.54940 * 110.87483 * 236.73558 * 2 1 3 5 5 N 1.48527 * 103.22881 * 204.15924 * 4 2 1 6 6 C 1.46891 * 111.00315 * 159.72229 * 5 4 2 7 7 C 1.50702 * 109.47380 * 169.99758 * 6 5 4 8 8 O 1.21294 * 119.99966 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00162 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99966 * 179.97438 * 9 7 6 11 11 H 1.07993 * 120.00064 * 0.02562 * 10 9 7 12 12 C 1.38951 * 119.99700 * 179.97438 * 10 9 7 13 13 N 1.31408 * 120.00254 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99802 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46630 * 60.00657 * 14 12 10 16 16 H 1.48500 * 109.46754 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47276 * 300.00556 * 14 12 10 18 18 C 1.48132 * 105.82522 * 39.26376 * 5 4 2 19 19 C 1.53993 * 106.94097 * 334.59187 * 18 5 4 20 20 H 1.09005 * 110.30602 * 120.26616 * 19 18 5 21 21 N 1.46499 * 110.31159 * 242.33342 * 19 18 5 22 22 C 1.34781 * 120.00110 * 272.21562 * 21 19 18 23 23 O 1.21282 * 119.99655 * 359.97438 * 22 21 19 24 24 C 1.50699 * 120.00004 * 179.97438 * 22 21 19 25 25 C 1.53005 * 110.43284 * 60.89717 * 24 22 21 26 26 C 1.51094 * 110.38791 * 298.54866 * 24 22 21 27 27 C 1.30525 * 111.10287 * 257.62114 * 26 24 22 28 28 C 1.51104 * 111.10650 * 0.02562 * 27 26 24 29 29 C 1.54637 * 104.82203 * 343.50481 * 28 27 26 30 30 H 1.09011 * 109.47093 * 296.85071 * 1 2 3 31 31 H 1.09000 * 109.47348 * 56.84679 * 1 2 3 32 32 H 1.09003 * 109.47435 * 176.85390 * 1 2 3 33 33 H 1.08996 * 110.66803 * 322.59505 * 4 2 1 34 34 H 1.09001 * 110.66091 * 85.72155 * 4 2 1 35 35 H 1.08996 * 109.47318 * 290.00239 * 6 5 4 36 36 H 1.09008 * 109.46930 * 50.00080 * 6 5 4 37 37 H 0.97003 * 120.00025 * 0.02562 * 9 7 6 38 38 H 0.97005 * 120.00430 * 179.97438 * 13 12 10 39 39 H 1.08999 * 109.95090 * 215.28883 * 18 5 4 40 40 H 1.09000 * 109.99267 * 93.92063 * 18 5 4 41 41 H 0.97002 * 119.99892 * 92.20739 * 21 19 18 42 42 H 1.09004 * 109.47134 * 299.10529 * 25 24 22 43 43 H 1.09004 * 109.47261 * 59.10048 * 25 24 22 44 44 H 1.08996 * 109.47061 * 179.10520 * 25 24 22 45 45 H 1.07999 * 124.45034 * 77.64874 * 26 24 22 46 46 H 1.08001 * 124.45397 * 180.02562 * 27 26 24 47 47 H 1.09002 * 110.38900 * 102.37280 * 28 27 26 48 48 H 1.09000 * 110.38594 * 224.63979 * 28 27 26 49 49 H 1.08997 * 111.03562 * 142.72145 * 29 28 27 50 50 H 1.09006 * 111.03454 * 266.65732 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0821 -0.7941 -1.2105 5 7 3.4358 -1.2052 -0.7584 6 6 3.9292 -2.3451 -1.5427 7 6 5.3851 -2.5773 -1.2303 8 8 5.9554 -1.8637 -0.4323 9 7 6.0531 -3.5786 -1.8367 10 6 7.3776 -3.7895 -1.5529 11 1 7.8857 -3.1536 -0.8431 12 6 8.0661 -4.8221 -2.1777 13 7 7.4478 -5.5961 -3.0411 14 14 9.8712 -5.1090 -1.7916 15 1 10.0275 -5.3984 -0.3434 16 1 10.3696 -6.2619 -2.5838 17 1 10.6512 -3.8947 -2.1408 18 6 3.2916 -1.5682 0.6705 19 6 2.0771 -0.7907 1.2106 20 1 1.3212 -1.4816 1.5840 21 7 2.4932 0.1289 2.2725 22 6 2.5459 -0.2968 3.5502 23 8 2.2484 -1.4410 3.8209 24 6 2.9745 0.6490 4.6424 25 6 2.0177 1.8401 4.7234 26 6 4.3882 1.1248 4.4018 27 6 5.2328 0.4991 5.1758 28 6 4.5231 -0.4988 6.0610 29 6 3.0330 -0.0898 6.0028 30 1 -0.3634 0.4642 0.9170 31 1 -0.3634 0.5620 -0.8604 32 1 -0.3634 -1.0261 -0.0564 33 1 1.4622 -1.6675 -1.4126 34 1 2.1480 -0.1556 -2.0915 35 1 3.3562 -3.2366 -1.2879 36 1 3.8153 -2.1313 -2.6055 37 1 5.5968 -4.1495 -2.4746 38 1 7.9286 -6.3168 -3.4776 39 1 4.1891 -1.2828 1.2192 40 1 3.1192 -2.6401 0.7671 41 1 2.7308 1.0440 2.0559 42 1 2.0311 2.3820 3.7776 43 1 1.0076 1.4820 4.9226 44 1 2.3326 2.5051 5.5276 45 1 4.6637 1.8834 3.6842 46 1 6.2989 0.6719 5.1826 47 1 4.6548 -1.5097 5.6752 48 1 4.8956 -0.4318 7.0832 49 1 2.3862 -0.9671 6.0019 50 1 2.7790 0.5808 6.8238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208321566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:37 Heat of formation + Delta-G solvation = -76.276117 kcal Electronic energy + Delta-G solvation = -29796.058430 eV Core-core repulsion = 25822.130210 eV Total energy + Delta-G solvation = -3973.928220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.79391 -40.65954 -39.54820 -38.34477 -36.07453 -35.50770 -33.78013 -33.25390 -32.40507 -30.20925 -29.77691 -28.61623 -26.84348 -26.09861 -25.32819 -23.51814 -22.10600 -21.78965 -20.91296 -20.71053 -19.86545 -19.69997 -18.18185 -17.78255 -17.61991 -16.75348 -16.65990 -16.52091 -16.22729 -15.77245 -15.65913 -15.36516 -15.27692 -14.80859 -14.39739 -14.18059 -14.09927 -13.94316 -13.56353 -13.43344 -13.29664 -13.24770 -13.07664 -12.95867 -12.88079 -12.78744 -12.49683 -12.45914 -12.35545 -12.16750 -12.14178 -12.06134 -11.88202 -11.74555 -11.64252 -11.50947 -11.03074 -10.36383 -10.12380 -10.02840 -9.87832 -9.37074 -8.48480 -5.97388 1.14440 1.37286 1.38431 1.49798 1.66925 2.03704 2.18846 2.26602 2.77959 3.17302 3.28874 3.46500 3.53531 3.60049 3.65769 3.81997 3.99172 4.05732 4.17118 4.25768 4.26978 4.31992 4.40974 4.44663 4.48532 4.53715 4.57076 4.64746 4.77211 4.80101 4.81433 4.84763 4.91065 4.93496 5.00883 5.05342 5.09419 5.19087 5.22287 5.32823 5.35453 5.37996 5.49946 5.54756 5.78334 5.87372 5.90566 6.06134 6.52798 6.58858 7.10879 7.22278 7.54183 8.10754 8.68945 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003130 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.118079 B = 8942.604455 C =10934.437384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.102 0.898 4 C 0.036 3.964 5 N -0.506 5.506 6 C 0.047 3.953 7 C 0.440 3.560 8 O -0.616 6.616 9 N -0.575 5.575 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.992 3.008 15 H -0.274 1.274 16 H -0.268 1.268 17 H -0.270 1.270 18 C 0.042 3.958 19 C 0.145 3.855 20 H 0.084 0.916 21 N -0.702 5.702 22 C 0.524 3.476 23 O -0.583 6.583 24 C -0.056 4.056 25 C -0.128 4.128 26 C -0.167 4.167 27 C -0.160 4.160 28 C -0.109 4.109 29 C -0.107 4.107 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.413 0.587 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.146 0.854 46 H 0.136 0.864 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.069 0.931 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.160 16.016 10.573 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.120 0.880 4 C -0.091 4.091 5 N -0.231 5.231 6 C -0.084 4.084 7 C 0.227 3.773 8 O -0.502 6.502 9 N -0.213 5.213 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.199 1.199 16 H -0.192 1.192 17 H -0.195 1.195 18 C -0.088 4.088 19 C 0.039 3.961 20 H 0.103 0.897 21 N -0.353 5.353 22 C 0.312 3.688 23 O -0.463 6.463 24 C -0.059 4.059 25 C -0.186 4.186 26 C -0.185 4.185 27 C -0.178 4.178 28 C -0.146 4.146 29 C -0.145 4.145 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.040 0.960 41 H 0.250 0.750 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.164 0.836 46 H 0.154 0.846 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.088 0.912 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.561 15.925 11.088 24.874 hybrid contribution 0.801 -1.499 -0.345 1.734 sum -14.760 14.427 10.743 23.268 Atomic orbital electron populations 1.21739 0.91762 1.02540 1.03242 1.22311 0.97244 0.99783 0.91072 0.87981 1.23509 0.87209 0.99484 0.98934 1.64484 1.24256 1.32854 1.01468 1.21964 0.91843 0.93918 1.00711 1.20819 0.90061 0.82353 0.84076 1.90478 1.71031 1.49717 1.38969 1.41920 1.10461 1.29052 1.39874 1.19603 0.87120 1.14959 1.24726 0.90571 1.26033 1.04423 0.95110 0.95652 1.69663 1.39074 1.19387 1.28056 0.85008 0.76942 0.78169 0.78331 1.19949 1.19229 1.19507 1.23149 0.98464 0.96995 0.90155 1.21849 0.94193 0.92009 0.88044 0.89747 1.45916 1.68065 1.15506 1.05808 1.20981 0.75475 0.88108 0.84253 1.90656 1.50856 1.21331 1.83456 1.20726 0.95916 0.95729 0.93492 1.21788 0.97534 0.94999 1.04245 1.23246 0.92763 1.01521 1.00999 1.23614 1.00092 0.96216 0.97829 1.21437 0.95057 0.97649 1.00423 1.22551 0.96306 1.00476 0.95119 0.91753 0.90038 0.92689 0.92269 0.87717 0.91772 0.86488 0.77062 0.91253 0.93064 0.95997 0.74964 0.90549 0.91930 0.89605 0.83645 0.84590 0.93094 0.89036 0.91241 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.17 71.98 0.66 -1.10 16 2 C -0.08 -1.55 3.36 -9.59 -0.03 -1.58 16 3 H 0.10 1.63 7.75 -2.39 -0.02 1.61 16 4 C 0.04 0.78 5.97 86.65 0.52 1.30 16 5 N -0.51 -16.82 4.91 -886.97 -4.36 -21.18 16 6 C 0.05 1.73 5.28 85.56 0.45 2.18 16 7 C 0.44 22.10 7.61 87.66 0.67 22.77 16 8 O -0.62 -35.86 14.87 -3.07 -0.05 -35.90 16 9 N -0.58 -30.87 5.29 -306.98 -1.62 -32.49 16 10 C -0.33 -19.73 9.68 84.04 0.81 -18.92 16 11 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -51.01 13.05 21.66 0.28 -50.73 16 14 Si 0.99 44.21 29.55 68.60 2.03 46.24 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 C 0.04 1.49 5.67 86.40 0.49 1.98 16 19 C 0.15 3.75 2.89 45.87 0.13 3.88 16 20 H 0.08 2.36 7.31 -2.38 -0.02 2.34 16 21 N -0.70 -16.39 4.87 -438.36 -2.14 -18.53 16 22 C 0.52 14.26 6.54 87.66 0.57 14.83 16 23 O -0.58 -21.03 15.12 -3.04 -0.05 -21.07 16 24 C -0.06 -1.11 0.73 -52.89 -0.04 -1.15 16 25 C -0.13 -1.61 8.42 71.98 0.61 -1.01 16 26 C -0.17 -3.38 9.29 26.26 0.24 -3.13 16 27 C -0.16 -3.50 10.78 26.26 0.28 -3.21 16 28 C -0.11 -2.43 6.80 30.53 0.21 -2.22 16 29 C -0.11 -2.20 6.07 31.81 0.19 -2.01 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.77 8.11 -2.39 -0.02 0.75 16 33 H 0.06 1.18 7.91 -2.39 -0.02 1.16 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 36 H 0.12 3.63 8.08 -2.38 -0.02 3.61 16 37 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 38 H 0.28 14.40 8.31 -92.70 -0.77 13.63 16 39 H 0.05 2.26 7.32 -2.39 -0.02 2.24 16 40 H 0.02 0.85 7.53 -2.39 -0.02 0.84 16 41 H 0.41 7.35 7.89 -92.71 -0.73 6.62 16 42 H 0.08 0.73 7.74 -2.38 -0.02 0.71 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.83 8.13 -2.39 -0.02 0.81 16 45 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 46 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 1.74 6.91 -2.39 -0.02 1.73 16 50 H 0.10 1.53 7.91 -2.38 -0.02 1.51 16 Total: -1.00 -77.93 401.39 -0.18 -78.12 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.52 Total: 43.16 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.23 Total: 12.38 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -7.84 Total: -122.92 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.09 Total: -56.97 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -77.93 -0.18 -78.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208321566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.842 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds