Wall clock time and date at job start Tue Mar 31 2020 18:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47118 * 119.99921 * 2 1 4 4 C 1.50698 * 120.00191 * 0.02562 * 3 2 1 5 5 C 1.32872 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.50695 * 120.00044 * 174.09273 * 5 3 2 7 7 C 1.50701 * 109.46739 * 234.27852 * 6 5 3 8 8 O 1.21291 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00178 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00346 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.64258 * 31.84751 * 10 9 7 12 12 C 1.54933 * 110.87839 * 268.58972 * 10 9 7 13 13 N 1.48536 * 103.23025 * 204.15757 * 12 10 9 14 14 C 1.46891 * 111.00290 * 159.71731 * 13 12 10 15 15 C 1.50702 * 109.47245 * 52.60442 * 14 13 12 16 16 O 1.21288 * 119.99628 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00117 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00092 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99384 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99725 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00436 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99531 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47103 * 90.00206 * 22 20 18 24 24 H 1.48501 * 109.47223 * 209.99889 * 22 20 18 25 25 H 1.48497 * 109.47229 * 330.00305 * 22 20 18 26 26 C 1.47906 * 105.81914 * 39.20089 * 13 12 10 27 27 C 1.53992 * 107.05925 * 334.67296 * 26 13 12 28 28 H 1.09004 * 110.30619 * 120.13625 * 27 26 13 29 29 C 1.52994 * 110.31084 * 242.20654 * 27 26 13 30 30 H 1.08001 * 120.00190 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00036 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00190 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46764 * 265.15511 * 4 3 2 34 34 H 1.09005 * 109.46951 * 25.15117 * 4 3 2 35 35 H 1.08993 * 109.47720 * 145.15546 * 4 3 2 36 36 H 1.08001 * 119.99794 * 354.08631 * 5 3 2 37 37 H 1.08998 * 109.47587 * 114.28118 * 6 5 3 38 38 H 1.08994 * 109.47303 * 354.27657 * 6 5 3 39 39 H 0.97001 * 119.99609 * 359.97438 * 9 7 6 40 40 H 1.09004 * 110.67220 * 85.71976 * 12 10 9 41 41 H 1.09000 * 110.66385 * 322.58608 * 12 10 9 42 42 H 1.09000 * 109.47458 * 292.60183 * 14 13 12 43 43 H 1.09004 * 109.47491 * 172.60088 * 14 13 12 44 44 H 0.97004 * 120.00342 * 359.97438 * 17 15 14 45 45 H 0.96998 * 119.99922 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.91465 * 94.02399 * 26 13 12 47 47 H 1.08993 * 109.91735 * 215.12473 * 26 13 12 48 48 H 1.09007 * 109.47276 * 58.55040 * 29 27 26 49 49 H 1.09006 * 109.47158 * 178.54489 * 29 27 26 50 50 H 1.08997 * 109.47555 * 298.55118 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3929 1.2742 -0.0005 6 6 4.1463 2.5723 -0.1348 7 6 5.1154 2.4740 -1.2847 8 8 5.1875 1.4503 -1.9312 9 7 5.9027 3.5232 -1.5942 10 6 6.8452 3.4275 -2.7116 11 1 6.4514 2.7758 -3.4917 12 6 8.2286 2.9269 -2.2258 13 7 9.1603 3.4465 -3.2594 14 6 10.5369 3.4975 -2.7495 15 6 10.9145 2.1513 -2.1870 16 8 10.1151 1.2394 -2.2083 17 7 12.1399 1.9611 -1.6593 18 6 12.4832 0.7365 -1.1470 19 1 11.7714 -0.0754 -1.1661 20 6 13.7468 0.5403 -0.6035 21 7 14.6126 1.5285 -0.5799 22 14 14.2142 -1.1279 0.0950 23 1 14.8175 -1.9615 -0.9756 24 1 15.1965 -0.9469 1.1940 25 1 13.0004 -1.8017 0.6220 26 6 8.6707 4.8000 -3.5998 27 6 7.1647 4.8294 -3.2796 28 1 6.9510 5.5967 -2.5355 29 6 6.3560 5.0858 -4.5528 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8687 -0.9353 -0.0004 33 1 1.2039 2.9374 -1.0233 34 1 0.3236 2.4286 0.4377 35 1 1.8596 3.3154 0.5876 36 1 3.9330 0.3438 0.0954 37 1 4.6943 2.7714 0.7861 38 1 3.4424 3.3833 -0.3213 39 1 5.8453 4.3418 -1.0769 40 1 8.2552 1.8376 -2.1965 41 1 8.4673 3.3450 -1.2478 42 1 10.6063 4.2514 -1.9653 43 1 11.2162 3.7550 -3.5622 44 1 12.7791 2.6905 -1.6418 45 1 15.4949 1.3914 -0.2008 46 1 9.1925 5.5454 -2.9996 47 1 8.8319 4.9976 -4.6595 48 1 6.5708 4.3055 -5.2830 49 1 5.2922 5.0781 -4.3153 50 1 6.6288 6.0563 -4.9673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208350864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:02 Heat of formation + Delta-G solvation = -33.761804 kcal Electronic energy + Delta-G solvation = -28646.267532 eV Core-core repulsion = 24674.182871 eV Total energy + Delta-G solvation = -3972.084661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.19629 -39.00380 -37.69815 -36.99130 -34.48208 -33.85364 -32.80427 -32.40234 -31.25238 -29.49558 -28.52394 -27.35491 -26.57482 -25.22870 -23.88588 -21.89872 -20.95531 -20.60130 -19.88369 -19.20350 -18.08007 -17.85950 -17.27383 -16.50284 -16.23136 -15.98703 -15.09429 -15.03054 -14.77936 -14.43357 -14.28272 -14.07624 -13.90272 -13.79156 -13.51730 -13.39606 -13.21486 -13.11442 -12.72299 -12.59809 -12.31773 -11.93997 -11.79254 -11.74431 -11.67833 -11.53379 -11.26871 -11.22649 -11.08631 -11.04708 -10.81081 -10.72945 -10.58562 -10.36688 -10.21076 -9.84014 -9.48976 -8.99987 -8.41759 -8.35884 -8.00570 -7.88094 -6.41395 -3.82004 1.13138 2.65316 2.76283 3.18668 3.20516 3.27278 3.33555 3.90136 4.10019 4.32891 4.42704 4.48859 4.63526 4.72466 4.78218 4.80281 4.99356 5.03420 5.07890 5.11359 5.19918 5.25404 5.36187 5.37718 5.41772 5.44144 5.51240 5.54211 5.58712 5.71697 5.75656 5.84260 5.86563 5.93626 5.97273 6.14006 6.14822 6.19700 6.27035 6.28091 6.47563 6.48186 6.73077 6.75925 7.21313 7.30009 7.47540 7.56230 8.06800 8.25029 8.62290 9.18780 9.54122 10.06294 10.76306 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.002516 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.966954 B =11126.421624 C =13413.570725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.118 4.118 7 C 0.516 3.484 8 O -0.526 6.526 9 N -0.724 5.724 10 C 0.140 3.860 11 H 0.104 0.896 12 C 0.032 3.968 13 N -0.493 5.493 14 C 0.038 3.962 15 C 0.440 3.560 16 O -0.577 6.577 17 N -0.562 5.562 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.037 3.963 27 C -0.108 4.108 28 H 0.076 0.924 29 C -0.139 4.139 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.397 0.603 40 H 0.123 0.877 41 H 0.037 0.963 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.307 10.867 0.339 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.129 4.129 3 C -0.115 4.115 4 C -0.178 4.178 5 C -0.131 4.131 6 C -0.157 4.157 7 C 0.301 3.699 8 O -0.401 6.401 9 N -0.376 5.376 10 C 0.035 3.965 11 H 0.122 0.878 12 C -0.097 4.097 13 N -0.218 5.218 14 C -0.094 4.094 15 C 0.226 3.774 16 O -0.461 6.461 17 N -0.199 5.199 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.091 4.091 27 C -0.128 4.128 28 H 0.094 0.906 29 C -0.197 4.197 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.231 0.769 40 H 0.141 0.859 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.568 9.164 -0.535 24.364 hybrid contribution 0.987 0.684 1.395 1.841 sum -21.581 9.848 0.860 23.737 Atomic orbital electron populations 1.24377 0.95688 1.01919 1.01021 1.21879 0.95302 0.96178 0.99582 1.20527 0.93855 0.94347 1.02802 1.20882 1.00213 0.94592 1.02147 1.22827 0.93865 0.97953 0.98503 1.20811 0.98192 0.98485 0.98243 1.20490 0.80800 0.83366 0.85196 1.90760 1.68121 1.29206 1.52059 1.45980 1.40248 1.16731 1.34591 1.22110 0.89423 0.96239 0.88723 0.87795 1.23837 0.88953 1.04690 0.92190 1.64557 1.01038 1.18134 1.38040 1.22109 0.91176 0.97006 0.99114 1.19731 0.83812 0.89563 0.84314 1.90471 1.50094 1.44038 1.61506 1.41847 1.12108 1.13353 1.52569 1.19706 0.98655 0.89640 1.34730 0.87897 1.25259 0.95642 0.99278 0.97783 1.69609 1.06898 1.31768 1.46068 0.85859 0.78444 0.81549 0.78462 1.20358 1.20953 1.19408 1.23025 0.93245 0.91037 1.01802 1.22242 0.95644 0.96639 0.98237 0.90585 1.21810 0.99262 1.01842 0.96781 0.88156 0.88207 0.86709 0.91484 0.91509 0.91413 0.86128 0.87792 0.88120 0.76950 0.85921 0.94515 0.93400 0.89072 0.77486 0.91892 0.93781 0.90015 0.91790 0.92796 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 14.11 28.88 0.41 -1.09 16 2 C -0.11 -1.04 9.83 -37.83 -0.37 -1.42 16 3 C -0.12 -1.10 5.98 -102.87 -0.62 -1.72 16 4 C -0.12 -0.86 8.54 36.00 0.31 -0.55 16 5 C -0.11 -1.21 8.45 -36.16 -0.31 -1.51 16 6 C -0.12 -1.06 5.77 -29.04 -0.17 -1.23 16 7 C 0.52 6.69 7.82 -10.98 -0.09 6.61 16 8 O -0.53 -9.46 15.68 5.55 0.09 -9.37 16 9 N -0.72 -8.08 5.18 -52.00 -0.27 -8.35 16 10 C 0.14 1.92 2.97 -66.07 -0.20 1.72 16 11 H 0.10 1.67 7.27 -51.93 -0.38 1.29 16 12 C 0.03 0.56 4.99 -1.90 -0.01 0.55 16 13 N -0.49 -8.43 5.26 -231.90 -1.22 -9.65 16 14 C 0.04 0.69 5.52 -4.98 -0.03 0.66 16 15 C 0.44 10.55 7.49 -10.99 -0.08 10.47 16 16 O -0.58 -15.77 13.09 5.55 0.07 -15.70 16 17 N -0.56 -14.40 5.29 -10.97 -0.06 -14.46 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 22 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.04 0.47 6.35 -2.75 -0.02 0.45 16 27 C -0.11 -1.15 3.32 -89.27 -0.30 -1.44 16 28 H 0.08 0.66 7.75 -51.93 -0.40 0.26 16 29 C -0.14 -1.29 8.90 37.15 0.33 -0.95 16 30 H 0.10 0.67 6.06 -52.49 -0.32 0.36 16 31 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 35 H 0.07 0.39 6.70 -51.93 -0.35 0.04 16 36 H 0.12 1.45 8.05 -52.49 -0.42 1.03 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.66 5.79 -51.93 -0.30 0.36 16 39 H 0.40 3.05 8.39 -40.82 -0.34 2.71 16 40 H 0.12 2.78 5.97 -51.93 -0.31 2.47 16 41 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 42 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 47 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 48 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 405.25 15.07 6.11 6.11 Total: -1.00 -34.16 405.25 -8.92 -43.09 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.97 Total: 13.48 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.37 Total: 2.50 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.82 Total: -56.41 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: 0.16 Total: -25.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.16 -8.92 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208350864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.325 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds