Wall clock time and date at job start Tue Mar 31 2020 18:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32865 * 1 3 3 C 1.47118 * 119.99921 * 2 1 4 4 C 1.50698 * 120.00191 * 0.02562 * 3 2 1 5 5 C 1.32872 * 120.00195 * 180.02562 * 3 2 1 6 6 C 1.50695 * 120.00044 * 174.09273 * 5 3 2 7 7 C 1.50701 * 109.46739 * 234.27852 * 6 5 3 8 8 O 1.21291 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00178 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00346 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.64258 * 31.84751 * 10 9 7 12 12 C 1.54933 * 110.87839 * 268.58972 * 10 9 7 13 13 N 1.48536 * 103.23025 * 204.15757 * 12 10 9 14 14 C 1.46891 * 111.00290 * 159.71731 * 13 12 10 15 15 C 1.50702 * 109.47245 * 52.60442 * 14 13 12 16 16 O 1.21288 * 119.99628 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00117 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00092 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99384 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99725 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00436 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99531 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47103 * 90.00206 * 22 20 18 24 24 H 1.48501 * 109.47223 * 209.99889 * 22 20 18 25 25 H 1.48497 * 109.47229 * 330.00305 * 22 20 18 26 26 C 1.47906 * 105.81914 * 39.20089 * 13 12 10 27 27 C 1.53992 * 107.05925 * 334.67296 * 26 13 12 28 28 H 1.09004 * 110.30619 * 120.13625 * 27 26 13 29 29 C 1.52994 * 110.31084 * 242.20654 * 27 26 13 30 30 H 1.08001 * 120.00190 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00036 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00190 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.46764 * 265.15511 * 4 3 2 34 34 H 1.09005 * 109.46951 * 25.15117 * 4 3 2 35 35 H 1.08993 * 109.47720 * 145.15546 * 4 3 2 36 36 H 1.08001 * 119.99794 * 354.08631 * 5 3 2 37 37 H 1.08998 * 109.47587 * 114.28118 * 6 5 3 38 38 H 1.08994 * 109.47303 * 354.27657 * 6 5 3 39 39 H 0.97001 * 119.99609 * 359.97438 * 9 7 6 40 40 H 1.09004 * 110.67220 * 85.71976 * 12 10 9 41 41 H 1.09000 * 110.66385 * 322.58608 * 12 10 9 42 42 H 1.09000 * 109.47458 * 292.60183 * 14 13 12 43 43 H 1.09004 * 109.47491 * 172.60088 * 14 13 12 44 44 H 0.97004 * 120.00342 * 359.97438 * 17 15 14 45 45 H 0.96998 * 119.99922 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.91465 * 94.02399 * 26 13 12 47 47 H 1.08993 * 109.91735 * 215.12473 * 26 13 12 48 48 H 1.09007 * 109.47276 * 58.55040 * 29 27 26 49 49 H 1.09006 * 109.47158 * 178.54489 * 29 27 26 50 50 H 1.08997 * 109.47555 * 298.55118 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0642 1.2741 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3929 1.2742 -0.0005 6 6 4.1463 2.5723 -0.1348 7 6 5.1154 2.4740 -1.2847 8 8 5.1875 1.4503 -1.9312 9 7 5.9027 3.5232 -1.5942 10 6 6.8452 3.4275 -2.7116 11 1 6.4514 2.7758 -3.4917 12 6 8.2286 2.9269 -2.2258 13 7 9.1603 3.4465 -3.2594 14 6 10.5369 3.4975 -2.7495 15 6 10.9145 2.1513 -2.1870 16 8 10.1151 1.2394 -2.2083 17 7 12.1399 1.9611 -1.6593 18 6 12.4832 0.7365 -1.1470 19 1 11.7714 -0.0754 -1.1661 20 6 13.7468 0.5403 -0.6035 21 7 14.6126 1.5285 -0.5799 22 14 14.2142 -1.1279 0.0950 23 1 14.8175 -1.9615 -0.9756 24 1 15.1965 -0.9469 1.1940 25 1 13.0004 -1.8017 0.6220 26 6 8.6707 4.8000 -3.5998 27 6 7.1647 4.8294 -3.2796 28 1 6.9510 5.5967 -2.5355 29 6 6.3560 5.0858 -4.5528 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8687 -0.9353 -0.0004 33 1 1.2039 2.9374 -1.0233 34 1 0.3236 2.4286 0.4377 35 1 1.8596 3.3154 0.5876 36 1 3.9330 0.3438 0.0954 37 1 4.6943 2.7714 0.7861 38 1 3.4424 3.3833 -0.3213 39 1 5.8453 4.3418 -1.0769 40 1 8.2552 1.8376 -2.1965 41 1 8.4673 3.3450 -1.2478 42 1 10.6063 4.2514 -1.9653 43 1 11.2162 3.7550 -3.5622 44 1 12.7791 2.6905 -1.6418 45 1 15.4949 1.3914 -0.2008 46 1 9.1925 5.5454 -2.9996 47 1 8.8319 4.9976 -4.6595 48 1 6.5708 4.3055 -5.2830 49 1 5.2922 5.0781 -4.3153 50 1 6.6288 6.0563 -4.9673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208350864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:01 Heat of formation + Delta-G solvation = -59.572771 kcal Electronic energy + Delta-G solvation = -28647.386780 eV Core-core repulsion = 24674.182871 eV Total energy + Delta-G solvation = -3973.203909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34967 -40.42973 -39.22144 -37.78139 -36.12525 -35.45495 -33.78960 -33.32869 -33.24430 -30.48262 -29.54010 -28.54729 -27.37239 -26.79932 -25.29538 -23.01215 -22.00976 -21.61015 -21.09724 -20.75606 -19.90144 -18.80544 -18.25861 -17.71853 -17.59933 -16.99477 -16.66593 -16.34642 -16.21744 -15.88074 -15.58958 -15.44256 -14.92712 -14.80315 -14.69269 -14.49820 -14.16488 -14.13856 -13.86298 -13.61149 -13.54116 -13.30307 -13.15120 -12.99836 -12.86168 -12.56938 -12.48088 -12.45600 -12.30303 -12.18117 -12.14597 -11.84938 -11.76462 -11.66910 -11.50415 -11.40645 -10.93571 -10.28924 -10.07822 -9.97123 -9.32956 -9.13702 -8.49995 -5.98531 0.40676 1.34489 1.38322 1.51049 1.63329 1.97955 2.00840 2.25455 2.31054 2.89916 3.16543 3.34328 3.56554 3.68416 3.71199 3.90954 3.95572 4.01312 4.19847 4.26419 4.31762 4.36159 4.42042 4.43429 4.45819 4.52898 4.58560 4.58899 4.70350 4.79499 4.89032 4.90353 4.97162 4.99455 5.07203 5.10723 5.13756 5.23247 5.37294 5.37911 5.45990 5.50347 5.58298 5.77267 5.82845 5.94867 6.03556 6.11546 6.56615 6.58221 7.10118 7.30196 7.51959 8.09437 8.67343 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.002516 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.966954 B =11126.421624 C =13413.570725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.150 4.150 3 C -0.104 4.104 4 C -0.123 4.123 5 C -0.149 4.149 6 C -0.102 4.102 7 C 0.508 3.492 8 O -0.587 6.587 9 N -0.707 5.707 10 C 0.149 3.851 11 H 0.072 0.928 12 C 0.037 3.963 13 N -0.516 5.516 14 C 0.050 3.950 15 C 0.434 3.566 16 O -0.617 6.617 17 N -0.571 5.571 18 C -0.333 4.333 19 H 0.074 0.926 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.267 1.267 25 H -0.276 1.276 26 C 0.036 3.964 27 C -0.094 4.094 28 H 0.110 0.890 29 C -0.136 4.136 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.418 0.582 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.044 0.956 49 H 0.061 0.939 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.695 14.235 0.849 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C -0.105 4.105 4 C -0.179 4.179 5 C -0.168 4.168 6 C -0.141 4.141 7 C 0.296 3.704 8 O -0.467 6.467 9 N -0.360 5.360 10 C 0.042 3.958 11 H 0.090 0.910 12 C -0.092 4.092 13 N -0.241 5.241 14 C -0.081 4.081 15 C 0.222 3.778 16 O -0.504 6.504 17 N -0.208 5.208 18 C -0.463 4.463 19 H 0.092 0.908 20 C -0.211 4.211 21 N -0.558 5.558 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.191 1.191 25 H -0.201 1.201 26 C -0.091 4.091 27 C -0.113 4.113 28 H 0.128 0.872 29 C -0.193 4.193 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.256 0.744 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.064 0.936 49 H 0.080 0.920 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.948 12.609 -0.011 27.065 hybrid contribution 1.309 -0.429 1.207 1.831 sum -22.639 12.181 1.196 25.736 Atomic orbital electron populations 1.24655 0.94961 1.03365 0.97541 1.21998 0.96267 0.96111 1.02412 1.20851 0.93604 0.95689 1.00313 1.20977 1.00716 0.93248 1.02972 1.22749 0.94594 0.97753 1.01704 1.20793 0.97729 0.98599 0.97013 1.21333 0.81025 0.82555 0.85449 1.90738 1.70016 1.31606 1.54333 1.45829 1.38913 1.17300 1.33987 1.21798 0.87440 0.97910 0.88613 0.90956 1.23503 0.91945 1.01117 0.92621 1.64472 1.00331 1.21713 1.37620 1.22009 0.92418 0.93361 1.00293 1.20858 0.82632 0.91497 0.82840 1.90489 1.51062 1.46285 1.62552 1.41900 1.12929 1.12787 1.53201 1.19602 0.99128 0.90357 1.37190 0.90802 1.26007 0.94979 1.02764 0.97369 1.69658 1.07201 1.33079 1.45898 0.84960 0.77996 0.77346 0.78216 1.19629 1.19127 1.20131 1.23187 0.94393 0.88594 1.02965 1.22233 0.94562 0.94840 0.99642 0.87166 1.21787 0.99514 1.02454 0.95536 0.86436 0.86984 0.87998 0.90893 0.90225 0.89521 0.89335 0.85769 0.84673 0.74362 0.92119 0.94830 0.90814 0.86891 0.76896 0.91203 0.91549 0.88708 0.93643 0.91990 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 14.11 66.64 0.94 -1.42 16 2 C -0.15 -2.86 9.83 23.43 0.23 -2.63 16 3 C -0.10 -1.97 5.98 -18.71 -0.11 -2.08 16 4 C -0.12 -1.40 8.54 71.24 0.61 -0.79 16 5 C -0.15 -3.36 8.45 24.51 0.21 -3.15 16 6 C -0.10 -1.77 5.77 29.10 0.17 -1.60 16 7 C 0.51 13.59 7.82 87.66 0.69 14.27 16 8 O -0.59 -22.99 15.68 -3.06 -0.05 -23.03 16 9 N -0.71 -15.29 5.18 -436.82 -2.26 -17.55 16 10 C 0.15 4.10 2.97 46.20 0.14 4.23 16 11 H 0.07 2.48 7.27 -2.38 -0.02 2.46 16 12 C 0.04 1.37 4.99 86.65 0.43 1.81 16 13 N -0.52 -17.57 5.26 -887.58 -4.67 -22.23 16 14 C 0.05 1.81 5.52 85.56 0.47 2.28 16 15 C 0.43 21.61 7.49 87.66 0.66 22.27 16 16 O -0.62 -36.12 13.09 -3.06 -0.04 -36.16 16 17 N -0.57 -30.19 5.29 -306.99 -1.62 -31.81 16 18 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 19 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 22 Si 0.99 44.19 29.55 68.60 2.03 46.22 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 C 0.04 0.80 6.35 86.44 0.55 1.34 16 27 C -0.09 -1.72 3.32 -9.92 -0.03 -1.75 16 28 H 0.11 1.35 7.75 -2.38 -0.02 1.33 16 29 C -0.14 -2.11 8.90 71.98 0.64 -1.47 16 30 H 0.12 1.23 6.06 -2.91 -0.02 1.21 16 31 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.10 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.71 6.20 -2.38 -0.01 0.70 16 35 H 0.09 0.67 6.70 -2.39 -0.02 0.66 16 36 H 0.09 2.48 8.05 -2.91 -0.02 2.46 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.14 1.36 5.79 -2.39 -0.01 1.35 16 39 H 0.42 5.27 8.39 -92.71 -0.78 4.49 16 40 H 0.06 3.02 5.97 -2.38 -0.01 3.00 16 41 H 0.03 1.22 8.02 -2.39 -0.02 1.20 16 42 H 0.07 2.27 7.81 -2.39 -0.02 2.25 16 43 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 44 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 45 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 46 H 0.07 1.22 7.57 -2.39 -0.02 1.20 16 47 H 0.09 1.89 7.69 -2.39 -0.02 1.87 16 48 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -82.06 405.25 -0.02 -82.09 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.55 Total: 39.85 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.86 Total: 12.45 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -8.27 Total: -121.41 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -0.09 Total: -59.19 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -82.06 -0.02 -82.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208350864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.514 kcal (2) G-P(sol) polarization free energy of solvation -82.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds