Wall clock time and date at job start Tue Mar 31 2020 18:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.35610 * 2 1 4 4 C 1.54001 * 110.30953 * 237.86405 * 2 1 3 5 5 N 1.47901 * 107.05405 * 242.31026 * 4 2 1 6 6 C 1.46902 * 110.99565 * 214.14773 * 5 4 2 7 7 C 1.50699 * 109.47317 * 187.26642 * 6 5 4 8 8 O 1.21289 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00363 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00450 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99742 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00504 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99582 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00143 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47146 * 90.00183 * 14 12 10 16 16 H 1.48501 * 109.47181 * 210.00176 * 14 12 10 17 17 H 1.48498 * 109.47259 * 329.99900 * 14 12 10 18 18 C 1.48531 * 105.82177 * 334.66413 * 5 4 2 19 19 C 1.54594 * 110.31160 * 122.14496 * 2 1 3 20 20 H 1.08996 * 110.87451 * 22.44769 * 19 2 1 21 21 N 1.46493 * 110.72357 * 259.22819 * 19 2 1 22 22 C 1.34784 * 119.99864 * 160.04279 * 21 19 2 23 23 O 1.21283 * 119.99649 * 359.72839 * 22 21 19 24 24 C 1.50694 * 119.99988 * 179.72721 * 22 21 19 25 25 H 1.09000 * 115.56405 * 325.73607 * 24 22 21 26 26 C 1.53124 * 117.51392 * 111.53812 * 24 22 21 27 27 C 1.52458 * 59.85612 * 107.44574 * 26 24 22 28 28 C 1.53266 * 128.58255 * 117.60061 * 27 26 24 29 29 C 1.53888 * 86.88254 * 114.94335 * 28 27 26 30 30 C 1.53263 * 128.58771 * 242.39600 * 27 26 24 31 31 H 1.09003 * 109.46573 * 297.85532 * 1 2 3 32 32 H 1.08994 * 109.46967 * 57.85473 * 1 2 3 33 33 H 1.09001 * 109.46904 * 177.85677 * 1 2 3 34 34 H 1.08997 * 109.91870 * 122.95140 * 4 2 1 35 35 H 1.09011 * 109.91423 * 1.65754 * 4 2 1 36 36 H 1.08997 * 109.47760 * 307.27493 * 6 5 4 37 37 H 1.09007 * 109.46984 * 67.27324 * 6 5 4 38 38 H 0.97000 * 119.99982 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99842 * 179.97438 * 13 12 10 40 40 H 1.08994 * 110.66726 * 280.77169 * 18 5 4 41 41 H 1.09006 * 110.80789 * 157.71277 * 18 5 4 42 42 H 0.97000 * 120.00740 * 339.76972 * 21 19 2 43 43 H 1.09002 * 117.51583 * 214.89524 * 26 24 22 44 44 H 1.09002 * 117.51126 * 359.97438 * 26 24 22 45 45 H 1.09002 * 113.64487 * 229.44145 * 28 27 26 46 46 H 1.09001 * 113.64157 * 0.44510 * 28 27 26 47 47 H 1.09000 * 113.59001 * 270.39314 * 29 28 27 48 48 H 1.08998 * 113.65999 * 139.58215 * 29 28 27 49 49 H 1.08997 * 113.63924 * 359.55626 * 30 27 26 50 50 H 1.08992 * 113.64420 * 130.47059 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0645 -0.7682 -1.2230 5 7 2.8313 -1.9235 -0.7083 6 6 3.9750 -2.2262 -1.5791 7 6 4.6247 -3.5087 -1.1275 8 8 4.1786 -4.1116 -0.1743 9 7 5.7015 -3.9858 -1.7827 10 6 6.2923 -5.1529 -1.3722 11 1 5.8945 -5.6902 -0.5239 12 6 7.4021 -5.6451 -2.0480 13 7 7.8858 -4.9916 -3.0804 14 14 8.2065 -7.2356 -1.4890 15 1 7.5788 -8.3821 -2.1938 16 1 9.6570 -7.1944 -1.8049 17 1 8.0234 -7.3947 -0.0240 18 6 3.2855 -1.5348 0.6513 19 6 2.0666 -0.7714 1.2276 20 1 1.3187 -1.4683 1.6057 21 7 2.4867 0.1569 2.2801 22 6 2.6011 -0.2737 3.5522 23 8 2.3514 -1.4285 3.8262 24 6 3.0392 0.6797 4.6338 25 1 3.7610 1.4374 4.3289 26 6 2.0045 1.0726 5.6921 27 6 3.1494 0.1325 6.0526 28 6 4.2732 0.3425 7.0734 29 6 3.6656 -0.8333 7.8585 30 6 3.0780 -1.3242 6.5236 31 1 -0.3632 0.4802 0.9086 32 1 -0.3633 0.5468 -0.8701 33 1 -0.3633 -1.0270 -0.0384 34 1 2.7162 -0.1224 -1.8115 35 1 1.2326 -1.1175 -1.8347 36 1 3.6301 -2.3360 -2.6072 37 1 4.6990 -1.4131 -1.5237 38 1 6.0586 -3.5035 -2.5447 39 1 8.6608 -5.3349 -3.5520 40 1 4.1564 -0.8819 0.5939 41 1 3.5065 -2.4167 1.2527 42 1 2.6864 1.0805 2.0610 43 1 2.0454 2.0891 6.0833 44 1 1.0071 0.6417 5.6054 45 1 5.2676 0.1364 6.6774 46 1 4.2142 1.2958 7.5986 47 1 2.9095 -0.5300 8.5826 48 1 4.4099 -1.5079 8.2817 49 1 2.0609 -1.7069 6.6080 50 1 3.7386 -1.9943 5.9735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208924020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:06 Heat of formation + Delta-G solvation = -17.422566 kcal Electronic energy + Delta-G solvation = -29157.564907 eV Core-core repulsion = 25186.188768 eV Total energy + Delta-G solvation = -3971.376139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58443 -39.53435 -38.30353 -37.49717 -34.47089 -33.88178 -33.75393 -32.54300 -31.17175 -28.98426 -27.32888 -25.83276 -25.44315 -24.57391 -23.42672 -23.20960 -21.22511 -20.63923 -19.96553 -19.14251 -18.51400 -17.83337 -17.20737 -16.54366 -16.07507 -15.46560 -15.39686 -15.12310 -14.87517 -14.60588 -14.34107 -14.18164 -13.96325 -13.77162 -13.53576 -13.15291 -12.91037 -12.72144 -12.53881 -12.37928 -12.19981 -11.97765 -11.74462 -11.68284 -11.64118 -11.46337 -11.27109 -11.21700 -11.01573 -10.92573 -10.60202 -10.52473 -10.35341 -10.28775 -10.17033 -9.98359 -9.67023 -9.44493 -9.02987 -8.43294 -7.96114 -7.88514 -6.37223 -3.77544 2.46587 2.98764 3.21442 3.29494 3.36128 3.54111 3.96114 4.06538 4.16354 4.33176 4.40222 4.45699 4.55542 4.58669 4.68166 4.71902 4.76629 4.94728 5.14740 5.17740 5.28250 5.31038 5.33210 5.36668 5.39255 5.43828 5.50303 5.51813 5.65373 5.69374 5.71740 5.71755 5.82466 5.84447 5.89284 5.93669 6.00440 6.08424 6.13751 6.15933 6.28434 6.32126 6.43644 6.56595 7.17516 7.24655 7.46921 7.60007 8.11456 8.25142 8.67360 9.23526 9.59678 10.12352 10.80828 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.002839 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.384395 B = 9861.797630 C =12184.605502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.038 3.962 5 N -0.489 5.489 6 C 0.038 3.962 7 C 0.445 3.555 8 O -0.573 6.573 9 N -0.567 5.567 10 C -0.296 4.296 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.034 3.966 19 C 0.146 3.854 20 H 0.103 0.897 21 N -0.721 5.721 22 C 0.541 3.459 23 O -0.523 6.523 24 C -0.180 4.180 25 H 0.121 0.879 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.099 4.099 29 C -0.143 4.143 30 C -0.083 4.083 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.391 0.609 39 H 0.271 0.729 40 H 0.038 0.962 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 18.875 12.278 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.090 4.090 5 N -0.213 5.213 6 C -0.094 4.094 7 C 0.230 3.770 8 O -0.456 6.456 9 N -0.204 5.204 10 C -0.426 4.426 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.094 4.094 19 C 0.041 3.959 20 H 0.121 0.879 21 N -0.373 5.373 22 C 0.327 3.673 23 O -0.398 6.398 24 C -0.201 4.201 25 H 0.139 0.861 26 C -0.160 4.160 27 C -0.126 4.126 28 C -0.136 4.136 29 C -0.180 4.180 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.625 17.076 13.009 24.413 hybrid contribution 1.492 0.878 -0.820 1.915 sum -10.133 17.954 12.190 23.950 Atomic orbital electron populations 1.21815 0.93782 1.02671 1.01485 1.22229 0.96969 0.98897 0.94509 0.90478 1.23004 0.98435 0.91463 0.96142 1.64433 1.20968 1.34215 1.01715 1.22074 0.92256 0.97351 0.97702 1.19713 0.83246 0.87623 0.86451 1.90531 1.64745 1.60778 1.29568 1.41851 1.25987 1.23060 1.29526 1.19704 1.09437 0.99419 1.14000 0.87947 1.25243 0.97160 0.99625 0.95985 1.69617 1.24948 1.39848 1.20202 0.85867 0.77932 0.81345 0.79226 1.20409 1.20986 1.19412 1.23627 0.94851 1.00128 0.90828 1.22007 0.97025 0.90813 0.86099 0.87864 1.45951 1.70165 1.13690 1.07451 1.19636 0.77015 0.88031 0.82593 1.90749 1.48682 1.18323 1.82058 1.22158 1.04828 1.02758 0.90380 0.86098 1.22779 0.94268 0.99712 0.99227 1.22307 0.99330 0.97826 0.93118 1.22514 0.96897 0.98913 0.95282 1.22812 1.00415 0.97966 0.96803 1.22345 1.01988 0.93168 0.94538 0.92722 0.92408 0.91694 0.93721 0.89875 0.89204 0.93372 0.77581 0.91967 0.94369 0.87699 0.76899 0.87753 0.88095 0.89495 0.91356 0.90260 0.91163 0.91259 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.89 37.16 0.33 -0.94 16 2 C -0.11 -1.11 3.32 -89.26 -0.30 -1.41 16 3 H 0.08 0.65 7.72 -51.93 -0.40 0.25 16 4 C 0.04 0.47 6.34 -2.75 -0.02 0.46 16 5 N -0.49 -8.44 4.95 -231.88 -1.15 -9.59 16 6 C 0.04 0.70 5.18 -4.98 -0.03 0.68 16 7 C 0.44 10.90 7.58 -10.99 -0.08 10.81 16 8 O -0.57 -16.19 14.42 5.55 0.08 -16.11 16 9 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 14 Si 0.93 21.59 29.55 -169.99 -5.02 16.57 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.03 0.59 5.54 -1.90 -0.01 0.58 16 19 C 0.15 1.95 2.89 -66.07 -0.19 1.76 16 20 H 0.10 1.63 7.42 -51.93 -0.39 1.25 16 21 N -0.72 -8.02 5.20 -52.01 -0.27 -8.30 16 22 C 0.54 7.07 7.61 -10.98 -0.08 6.99 16 23 O -0.52 -9.11 14.86 5.56 0.08 -9.03 16 24 C -0.18 -1.75 6.19 -91.99 -0.57 -2.32 16 25 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 26 C -0.12 -1.00 10.24 -26.94 -0.28 -1.28 16 27 C -0.13 -1.24 2.88 -154.79 -0.45 -1.68 16 28 C -0.10 -0.82 8.10 -26.13 -0.21 -1.03 16 29 C -0.14 -1.23 8.08 -25.81 -0.21 -1.44 16 30 C -0.08 -0.94 6.47 -26.13 -0.17 -1.11 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.50 7.77 -51.93 -0.40 0.10 16 35 H 0.08 0.98 7.68 -51.92 -0.40 0.58 16 36 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 37 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 38 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.04 0.64 7.85 -51.93 -0.41 0.23 16 41 H 0.10 2.31 6.92 -51.93 -0.36 1.95 16 42 H 0.40 3.14 8.34 -40.82 -0.34 2.80 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -34.24 403.83 -10.46 -44.70 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -8.43 Total: 12.93 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.50 Total: 1.93 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.75 Total: -57.07 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.16 Total: -25.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.24 -10.46 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208924020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.274 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds