Wall clock time and date at job start Tue Mar 31 2020 18:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.35610 * 2 1 4 4 C 1.54001 * 110.30953 * 237.86405 * 2 1 3 5 5 N 1.47901 * 107.05405 * 242.31026 * 4 2 1 6 6 C 1.46902 * 110.99565 * 214.14773 * 5 4 2 7 7 C 1.50699 * 109.47317 * 187.26642 * 6 5 4 8 8 O 1.21289 * 119.99800 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00363 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00450 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99742 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00504 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99582 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00143 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47146 * 90.00183 * 14 12 10 16 16 H 1.48501 * 109.47181 * 210.00176 * 14 12 10 17 17 H 1.48498 * 109.47259 * 329.99900 * 14 12 10 18 18 C 1.48531 * 105.82177 * 334.66413 * 5 4 2 19 19 C 1.54594 * 110.31160 * 122.14496 * 2 1 3 20 20 H 1.08996 * 110.87451 * 22.44769 * 19 2 1 21 21 N 1.46493 * 110.72357 * 259.22819 * 19 2 1 22 22 C 1.34784 * 119.99864 * 160.04279 * 21 19 2 23 23 O 1.21283 * 119.99649 * 359.72839 * 22 21 19 24 24 C 1.50694 * 119.99988 * 179.72721 * 22 21 19 25 25 H 1.09000 * 115.56405 * 325.73607 * 24 22 21 26 26 C 1.53124 * 117.51392 * 111.53812 * 24 22 21 27 27 C 1.52458 * 59.85612 * 107.44574 * 26 24 22 28 28 C 1.53266 * 128.58255 * 117.60061 * 27 26 24 29 29 C 1.53888 * 86.88254 * 114.94335 * 28 27 26 30 30 C 1.53263 * 128.58771 * 242.39600 * 27 26 24 31 31 H 1.09003 * 109.46573 * 297.85532 * 1 2 3 32 32 H 1.08994 * 109.46967 * 57.85473 * 1 2 3 33 33 H 1.09001 * 109.46904 * 177.85677 * 1 2 3 34 34 H 1.08997 * 109.91870 * 122.95140 * 4 2 1 35 35 H 1.09011 * 109.91423 * 1.65754 * 4 2 1 36 36 H 1.08997 * 109.47760 * 307.27493 * 6 5 4 37 37 H 1.09007 * 109.46984 * 67.27324 * 6 5 4 38 38 H 0.97000 * 119.99982 * 0.02562 * 9 7 6 39 39 H 0.97000 * 119.99842 * 179.97438 * 13 12 10 40 40 H 1.08994 * 110.66726 * 280.77169 * 18 5 4 41 41 H 1.09006 * 110.80789 * 157.71277 * 18 5 4 42 42 H 0.97000 * 120.00740 * 339.76972 * 21 19 2 43 43 H 1.09002 * 117.51583 * 214.89524 * 26 24 22 44 44 H 1.09002 * 117.51126 * 359.97438 * 26 24 22 45 45 H 1.09002 * 113.64487 * 229.44145 * 28 27 26 46 46 H 1.09001 * 113.64157 * 0.44510 * 28 27 26 47 47 H 1.09000 * 113.59001 * 270.39314 * 29 28 27 48 48 H 1.08998 * 113.65999 * 139.58215 * 29 28 27 49 49 H 1.08997 * 113.63924 * 359.55626 * 30 27 26 50 50 H 1.08992 * 113.64420 * 130.47059 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0220 0.0000 4 6 2.0645 -0.7682 -1.2230 5 7 2.8313 -1.9235 -0.7083 6 6 3.9750 -2.2262 -1.5791 7 6 4.6247 -3.5087 -1.1275 8 8 4.1786 -4.1116 -0.1743 9 7 5.7015 -3.9858 -1.7827 10 6 6.2923 -5.1529 -1.3722 11 1 5.8945 -5.6902 -0.5239 12 6 7.4021 -5.6451 -2.0480 13 7 7.8858 -4.9916 -3.0804 14 14 8.2065 -7.2356 -1.4890 15 1 7.5788 -8.3821 -2.1938 16 1 9.6570 -7.1944 -1.8049 17 1 8.0234 -7.3947 -0.0240 18 6 3.2855 -1.5348 0.6513 19 6 2.0666 -0.7714 1.2276 20 1 1.3187 -1.4683 1.6057 21 7 2.4867 0.1569 2.2801 22 6 2.6011 -0.2737 3.5522 23 8 2.3514 -1.4285 3.8262 24 6 3.0392 0.6797 4.6338 25 1 3.7610 1.4374 4.3289 26 6 2.0045 1.0726 5.6921 27 6 3.1494 0.1325 6.0526 28 6 4.2732 0.3425 7.0734 29 6 3.6656 -0.8333 7.8585 30 6 3.0780 -1.3242 6.5236 31 1 -0.3632 0.4802 0.9086 32 1 -0.3633 0.5468 -0.8701 33 1 -0.3633 -1.0270 -0.0384 34 1 2.7162 -0.1224 -1.8115 35 1 1.2326 -1.1175 -1.8347 36 1 3.6301 -2.3360 -2.6072 37 1 4.6990 -1.4131 -1.5237 38 1 6.0586 -3.5035 -2.5447 39 1 8.6608 -5.3349 -3.5520 40 1 4.1564 -0.8819 0.5939 41 1 3.5065 -2.4167 1.2527 42 1 2.6864 1.0805 2.0610 43 1 2.0454 2.0891 6.0833 44 1 1.0071 0.6417 5.6054 45 1 5.2676 0.1364 6.6774 46 1 4.2142 1.2958 7.5986 47 1 2.9095 -0.5300 8.5826 48 1 4.4099 -1.5079 8.2817 49 1 2.0609 -1.7069 6.6080 50 1 3.7386 -1.9943 5.9735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208924020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:05 Heat of formation + Delta-G solvation = -42.809166 kcal Electronic energy + Delta-G solvation = -29158.665753 eV Core-core repulsion = 25186.188768 eV Total energy + Delta-G solvation = -3972.476984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56630 -40.72348 -39.76081 -38.85928 -36.08782 -35.48366 -34.63940 -33.62126 -33.25715 -30.25474 -28.70128 -26.83531 -26.61155 -25.99965 -24.55116 -23.94585 -22.47088 -21.68656 -21.06304 -20.85719 -19.91941 -19.30666 -18.21549 -17.78269 -17.61696 -16.64912 -16.40825 -16.35374 -16.14407 -16.10313 -15.71831 -15.63352 -15.34274 -14.86898 -14.76769 -14.58057 -14.10267 -13.84525 -13.75237 -13.52899 -13.27938 -13.19699 -13.01874 -12.98994 -12.84316 -12.47721 -12.45913 -12.43601 -12.35666 -12.19984 -12.15795 -11.91598 -11.69457 -11.51214 -11.30013 -11.04865 -10.83931 -10.60214 -10.34668 -10.12311 -10.03061 -9.34175 -8.49608 -5.98217 1.34730 1.37977 1.48164 1.51069 2.01694 2.03462 2.26643 2.75850 2.84425 3.16510 3.30440 3.47781 3.51353 3.60620 3.66887 3.79497 3.86664 3.92599 3.94847 4.10617 4.16553 4.25314 4.31520 4.42075 4.48656 4.49258 4.54850 4.62273 4.66740 4.78932 4.82262 4.83554 4.87163 4.92757 5.01656 5.03651 5.06737 5.08360 5.11609 5.13508 5.35320 5.37621 5.37939 5.47258 5.50111 5.80546 5.94102 6.08491 6.55918 6.58581 7.10697 7.28860 7.53381 8.11045 8.68011 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009866 B = 0.002839 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.384395 B = 9861.797630 C =12184.605502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.113 0.887 4 C 0.037 3.963 5 N -0.517 5.517 6 C 0.052 3.948 7 C 0.437 3.563 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.073 0.927 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.270 1.270 16 H -0.266 1.266 17 H -0.277 1.277 18 C 0.039 3.961 19 C 0.155 3.845 20 H 0.070 0.930 21 N -0.704 5.704 22 C 0.532 3.468 23 O -0.579 6.579 24 C -0.184 4.184 25 H 0.151 0.849 26 C -0.097 4.097 27 C -0.144 4.144 28 C -0.087 4.087 29 C -0.133 4.133 30 C -0.100 4.100 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.418 0.582 43 H 0.141 0.859 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 22.573 11.797 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.131 0.869 4 C -0.090 4.090 5 N -0.242 5.242 6 C -0.080 4.080 7 C 0.225 3.775 8 O -0.505 6.505 9 N -0.212 5.212 10 C -0.464 4.464 11 H 0.091 0.909 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.195 1.195 16 H -0.191 1.191 17 H -0.202 1.202 18 C -0.090 4.090 19 C 0.049 3.951 20 H 0.088 0.912 21 N -0.357 5.357 22 C 0.320 3.680 23 O -0.458 6.458 24 C -0.205 4.205 25 H 0.168 0.832 26 C -0.134 4.134 27 C -0.144 4.144 28 C -0.124 4.124 29 C -0.170 4.170 30 C -0.137 4.137 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.256 0.744 43 H 0.159 0.841 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.674 20.847 12.483 26.958 hybrid contribution 1.466 -0.338 -0.686 1.653 sum -10.208 20.509 11.797 25.768 Atomic orbital electron populations 1.21793 0.92543 1.01977 1.03056 1.22223 0.97847 0.99698 0.91290 0.86894 1.23158 0.98399 0.90282 0.97196 1.64296 1.20740 1.37556 1.01578 1.21947 0.93027 0.94249 0.98771 1.20885 0.82342 0.89083 0.85225 1.90513 1.65828 1.62687 1.31487 1.41905 1.26617 1.22725 1.29935 1.19612 1.11156 1.01131 1.14468 0.90889 1.26004 0.96864 1.02483 0.95727 1.69665 1.25154 1.40864 1.20341 0.84961 0.77724 0.77550 0.78296 1.19496 1.19098 1.20177 1.23379 0.96859 0.97974 0.90779 1.21710 0.94544 0.91161 0.87735 0.91168 1.45789 1.69181 1.14258 1.06440 1.20395 0.75980 0.87887 0.83756 1.90739 1.51133 1.20964 1.82986 1.22226 1.06492 1.02624 0.89186 0.83151 1.22895 0.92906 1.00753 0.96849 1.22474 1.01337 0.96812 0.93804 1.22456 0.95854 0.99754 0.94368 1.22810 1.00597 0.98063 0.95572 1.22295 1.00364 0.94216 0.96853 0.91946 0.89912 0.93682 0.91189 0.88953 0.86610 0.90996 0.76922 0.91207 0.93835 0.94053 0.74424 0.84087 0.89098 0.90029 0.88687 0.88647 0.91056 0.93065 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.89 71.98 0.64 -1.49 16 2 C -0.09 -1.66 3.32 -9.91 -0.03 -1.69 16 3 H 0.11 1.33 7.72 -2.38 -0.02 1.31 16 4 C 0.04 0.82 6.34 86.45 0.55 1.37 16 5 N -0.52 -17.87 4.95 -887.54 -4.40 -22.27 16 6 C 0.05 1.88 5.18 85.56 0.44 2.32 16 7 C 0.44 22.31 7.58 87.66 0.66 22.98 16 8 O -0.62 -37.45 14.42 -3.06 -0.04 -37.49 16 9 N -0.57 -30.93 5.29 -306.99 -1.62 -32.55 16 10 C -0.33 -19.92 9.68 84.04 0.81 -19.11 16 11 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 13 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 14 Si 0.99 44.65 29.55 68.60 2.03 46.68 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 C 0.04 1.42 5.54 86.65 0.48 1.90 16 19 C 0.15 4.20 2.89 46.20 0.13 4.34 16 20 H 0.07 2.39 7.42 -2.39 -0.02 2.38 16 21 N -0.70 -15.20 5.20 -436.85 -2.27 -17.47 16 22 C 0.53 14.31 7.61 87.65 0.67 14.97 16 23 O -0.58 -22.13 14.86 -3.04 -0.05 -22.17 16 24 C -0.18 -3.34 6.19 -11.68 -0.07 -3.42 16 25 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 26 C -0.10 -1.36 10.24 30.46 0.31 -1.04 16 27 C -0.14 -2.75 2.88 -52.36 -0.15 -2.90 16 28 C -0.09 -1.30 8.10 30.98 0.25 -1.05 16 29 C -0.13 -2.25 8.08 31.19 0.25 -2.00 16 30 C -0.10 -2.47 6.47 30.98 0.20 -2.27 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 1.26 7.77 -2.39 -0.02 1.24 16 35 H 0.09 1.92 7.68 -2.38 -0.02 1.90 16 36 H 0.12 3.62 8.11 -2.39 -0.02 3.60 16 37 H 0.07 2.29 7.90 -2.38 -0.02 2.27 16 38 H 0.40 20.02 7.90 -92.71 -0.73 19.28 16 39 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.04 1.47 7.85 -2.39 -0.02 1.45 16 41 H 0.04 2.01 6.92 -2.38 -0.02 1.99 16 42 H 0.42 5.42 8.34 -92.71 -0.77 4.65 16 43 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 Total: -1.00 -82.61 403.83 -1.01 -83.62 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -0.55 Total: 39.36 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 5.62 Total: 12.77 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -8.01 Total: -122.76 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -0.09 Total: -59.66 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -82.61 -1.01 -83.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208924020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.808 kcal (2) G-P(sol) polarization free energy of solvation -82.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds