Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.30511 * 2 1 4 4 C 1.54393 * 110.43208 * 237.76974 * 2 1 3 5 5 N 1.48147 * 104.61395 * 264.95250 * 4 2 1 6 6 C 1.34774 * 127.83873 * 140.41883 * 5 4 2 7 7 O 1.21283 * 120.00043 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00029 * 359.97165 * 6 5 4 9 9 C 1.53000 * 109.47361 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.34343 * 305.70218 * 9 8 6 11 11 C 1.51102 * 110.38775 * 67.98491 * 9 8 6 12 12 C 1.30523 * 111.10262 * 135.24928 * 11 9 8 13 13 C 1.51101 * 111.10555 * 0.02562 * 12 11 9 14 14 C 1.54634 * 110.38968 * 183.41381 * 9 8 6 15 15 C 1.48311 * 104.39360 * 320.46949 * 5 4 2 16 16 C 1.54279 * 110.34467 * 122.17993 * 2 1 3 17 17 H 1.09003 * 110.34464 * 359.97438 * 16 2 1 18 18 N 1.46901 * 110.34084 * 237.84607 * 16 2 1 19 19 C 1.46902 * 110.99844 * 156.47084 * 18 16 2 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 16 21 21 O 1.21293 * 120.00255 * 0.02562 * 20 19 18 22 22 N 1.34783 * 120.00004 * 180.02562 * 20 19 18 23 23 C 1.37092 * 119.99804 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00499 * 0.02562 * 23 22 20 25 25 C 1.38956 * 119.99671 * 179.72159 * 23 22 20 26 26 N 1.31414 * 120.00152 * 0.27554 * 25 23 22 27 27 Si 1.86803 * 119.99914 * 180.27723 * 25 23 22 28 28 H 1.48498 * 109.47174 * 90.00084 * 27 25 23 29 29 H 1.48501 * 109.47062 * 210.00035 * 27 25 23 30 30 H 1.48504 * 109.46913 * 329.99834 * 27 25 23 31 31 H 1.08995 * 109.46954 * 297.82669 * 1 2 3 32 32 H 1.09001 * 109.47109 * 57.82298 * 1 2 3 33 33 H 1.08993 * 109.46953 * 177.82213 * 1 2 3 34 34 H 1.09001 * 110.40662 * 23.73233 * 4 2 1 35 35 H 1.08997 * 110.41143 * 146.16591 * 4 2 1 36 36 H 1.09000 * 109.47132 * 300.00273 * 8 6 5 37 37 H 1.09005 * 109.47169 * 60.00071 * 8 6 5 38 38 H 1.07992 * 124.44818 * 315.27978 * 11 9 8 39 39 H 1.08003 * 124.45034 * 179.97438 * 12 11 9 40 40 H 1.08997 * 110.38855 * 102.37216 * 13 12 11 41 41 H 1.09001 * 110.38833 * 224.63886 * 13 12 11 42 42 H 1.08999 * 111.03492 * 334.59125 * 14 9 8 43 43 H 1.09004 * 111.03721 * 98.52131 * 14 9 8 44 44 H 1.09005 * 110.38224 * 280.74033 * 15 5 4 45 45 H 1.08999 * 110.51284 * 158.25121 * 15 5 4 46 46 H 1.00895 * 111.00207 * 280.42427 * 18 16 2 47 47 H 1.09004 * 109.47131 * 60.00016 * 19 18 16 48 48 H 1.08994 * 109.47471 * 299.99766 * 19 18 16 49 49 H 0.97000 * 119.99715 * 359.97438 * 22 20 19 50 50 H 0.96991 * 119.99827 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2239 5 7 2.3176 -2.1429 -0.7213 6 6 2.0834 -3.3101 -1.3531 7 8 2.3435 -4.3597 -0.8040 8 6 1.4983 -3.3110 -2.7419 9 6 1.3347 -4.7533 -3.2255 10 1 2.2819 -5.2877 -3.1511 11 6 0.2674 -5.4599 -2.4226 12 6 -0.5295 -6.1429 -3.1986 13 6 -0.1261 -6.0062 -4.6483 14 6 0.8155 -4.7776 -4.6819 15 6 2.8818 -1.9417 0.6354 16 6 2.0664 -0.7704 1.2243 17 1 1.2398 -1.1485 1.8261 18 7 2.9312 0.0973 2.0349 19 6 2.9983 -0.3759 3.4240 20 6 3.8928 0.5366 4.2229 21 8 4.4220 1.4879 3.6879 22 7 4.1049 0.2956 5.5320 23 6 4.9182 1.1260 6.2588 24 1 5.3887 1.9735 5.7827 25 6 5.1322 0.8809 7.6098 26 7 4.5592 -0.1501 8.1893 27 14 6.2342 2.0168 8.6020 28 1 5.4190 3.1128 9.1846 29 1 6.8825 1.2476 9.6944 30 1 7.2773 2.5929 7.7158 31 1 -0.3633 0.4797 0.9088 32 1 -0.3633 0.5473 -0.8698 33 1 -0.3633 -1.0269 -0.0391 34 1 1.3253 -0.7879 -2.0206 35 1 2.9968 -0.3225 -1.5780 36 1 0.5253 -2.8200 -2.7265 37 1 2.1651 -2.7751 -3.4175 38 1 0.1756 -5.4064 -1.3479 39 1 -1.3668 -6.7295 -2.8502 40 1 0.4041 -6.8987 -4.9807 41 1 -1.0031 -5.8321 -5.2717 42 1 0.2631 -3.8675 -4.9155 43 1 1.6334 -4.9286 -5.3865 44 1 3.9371 -1.6761 0.5722 45 1 2.7502 -2.8385 1.2407 46 1 3.8535 0.1670 1.6317 47 1 3.4018 -1.3883 3.4438 48 1 1.9980 -0.3750 3.8569 49 1 3.6814 -0.4650 5.9599 50 1 4.7089 -0.3213 9.1322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214112109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = -54.767316 kcal Electronic energy + Delta-G solvation = -28552.259830 eV Core-core repulsion = 24579.264301 eV Total energy + Delta-G solvation = -3972.995529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53365 -39.21016 -38.25704 -37.64550 -34.70971 -33.79367 -32.49759 -31.90453 -31.22447 -29.28091 -28.95364 -26.80364 -26.55558 -25.20765 -23.98220 -22.53740 -20.87889 -20.32051 -19.68455 -19.21529 -18.75114 -17.90130 -17.30451 -16.56602 -16.15580 -16.09840 -15.66153 -15.39329 -15.00424 -14.69622 -14.50162 -14.12089 -13.83831 -13.74026 -13.54451 -13.23531 -13.06860 -12.89427 -12.47896 -12.31178 -12.18290 -12.17313 -12.14408 -11.92995 -11.67023 -11.59298 -11.53764 -11.46098 -11.15375 -11.09811 -11.06736 -11.01625 -10.89262 -10.39898 -10.22441 -9.93650 -9.51843 -9.16646 -8.95664 -8.48650 -8.10692 -7.97076 -6.42329 -3.83298 2.04589 2.47220 2.72109 3.17593 3.26351 3.32023 3.89175 4.00448 4.14280 4.27192 4.28505 4.37387 4.44223 4.53323 4.68632 4.80172 4.89739 5.02288 5.04548 5.06975 5.10460 5.15656 5.21063 5.25141 5.27646 5.31357 5.40550 5.47039 5.53174 5.56532 5.59920 5.62046 5.68006 5.74857 5.80446 5.84839 5.92897 5.94595 5.99707 6.01522 6.16692 6.28827 6.32781 6.64969 7.15467 7.37093 7.54569 7.56713 7.99611 8.05143 8.59994 9.16904 9.53212 10.04250 10.75315 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.001862 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.378815 B =15033.940111 C =15550.343375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.102 0.898 4 C 0.102 3.898 5 N -0.622 5.622 6 C 0.532 3.468 7 O -0.539 6.539 8 C -0.127 4.127 9 C -0.055 4.055 10 H 0.090 0.910 11 C -0.141 4.141 12 C -0.182 4.182 13 C -0.099 4.099 14 C -0.122 4.122 15 C 0.074 3.926 16 C 0.079 3.921 17 H 0.090 0.910 18 N -0.654 5.654 19 C 0.048 3.952 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.563 5.563 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.351 0.649 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -8.266 -24.788 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.121 0.879 4 C -0.021 4.021 5 N -0.356 5.356 6 C 0.321 3.679 7 O -0.416 6.416 8 C -0.167 4.167 9 C -0.073 4.073 10 H 0.108 0.892 11 C -0.159 4.159 12 C -0.200 4.200 13 C -0.136 4.136 14 C -0.159 4.159 15 C -0.051 4.051 16 C -0.033 4.033 17 H 0.108 0.892 18 N -0.286 5.286 19 C -0.085 4.085 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.758 3.242 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.144 -7.890 -24.570 28.109 hybrid contribution 0.836 -0.737 0.964 1.474 sum -10.308 -8.627 -23.606 27.165 Atomic orbital electron populations 1.21797 0.94173 1.01495 1.02275 1.22158 0.96268 1.00632 0.92841 0.87947 1.22595 1.00843 0.81459 0.97247 1.49021 1.63351 1.05765 1.17504 1.20361 0.77847 0.81935 0.87730 1.90720 1.52644 1.30421 1.67827 1.21690 1.02459 0.98989 0.93514 1.20844 0.99326 0.93700 0.93465 0.89228 1.23301 0.95148 0.97889 0.99529 1.23251 1.00080 1.01286 0.95410 1.21362 0.98996 0.98168 0.95076 1.22590 0.99071 0.98549 0.95727 1.23293 0.97748 1.00406 0.83620 1.22637 0.96211 0.90221 0.94200 0.89188 1.60264 1.17875 1.49359 1.01119 1.21745 1.00756 0.96500 0.89451 1.19776 0.86293 0.88095 0.83266 1.90522 1.53859 1.31982 1.70480 1.41866 1.43161 1.27397 1.07493 1.19705 1.23408 1.08599 0.91249 0.87893 1.25276 0.98314 0.97317 0.97051 1.69612 1.43988 1.27932 1.12687 0.85849 0.79853 0.79487 0.79042 1.20383 1.20940 1.19424 0.91830 0.92500 0.93030 0.90178 0.90742 0.88779 0.88831 0.85742 0.86053 0.90898 0.91331 0.90866 0.90790 0.90964 0.89904 0.82815 0.93691 0.89473 0.77439 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.91 37.16 0.33 -0.83 16 2 C -0.10 -0.93 3.44 -89.22 -0.31 -1.23 16 3 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 4 C 0.10 0.80 6.47 -2.41 -0.02 0.79 16 5 N -0.62 -6.50 3.32 -169.17 -0.56 -7.07 16 6 C 0.53 6.05 7.69 -10.99 -0.08 5.97 16 7 O -0.54 -8.20 15.06 5.56 0.08 -8.11 16 8 C -0.13 -0.97 4.08 -27.88 -0.11 -1.09 16 9 C -0.05 -0.46 2.52 -90.72 -0.23 -0.69 16 10 H 0.09 0.89 7.96 -51.92 -0.41 0.48 16 11 C -0.14 -1.35 9.23 -35.70 -0.33 -1.68 16 12 C -0.18 -1.48 10.78 -35.70 -0.38 -1.87 16 13 C -0.10 -0.65 6.81 -26.72 -0.18 -0.83 16 14 C -0.12 -0.75 6.72 -24.91 -0.17 -0.92 16 15 C 0.07 0.87 6.70 -2.32 -0.02 0.86 16 16 C 0.08 0.92 3.02 -66.32 -0.20 0.72 16 17 H 0.09 1.07 7.41 -51.93 -0.38 0.69 16 18 N -0.65 -9.81 5.84 -106.51 -0.62 -10.44 16 19 C 0.05 0.82 6.01 -4.97 -0.03 0.79 16 20 C 0.44 10.23 7.82 -10.98 -0.09 10.15 16 21 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 22 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 23 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 25 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 26 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 27 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.47 7.03 -51.93 -0.36 0.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.61 7.95 -51.93 -0.41 0.19 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.12 1.39 7.44 -52.49 -0.39 1.00 16 39 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.38 7.91 -51.93 -0.41 -0.03 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.87 7.58 -51.93 -0.39 0.47 16 45 H 0.08 1.09 7.89 -51.93 -0.41 0.69 16 46 H 0.35 5.45 7.82 -39.29 -0.31 5.14 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 404.31 15.07 6.09 6.09 Total: -1.00 -32.76 404.31 -9.71 -42.47 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.38 Total: 12.47 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.05 Total: 2.13 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.52 Total: -55.59 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.17 Total: -23.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.76 -9.71 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214112109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.294 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds