Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.30511 * 2 1 4 4 C 1.54393 * 110.43208 * 237.76974 * 2 1 3 5 5 N 1.48147 * 104.61395 * 264.95250 * 4 2 1 6 6 C 1.34774 * 127.83873 * 140.41883 * 5 4 2 7 7 O 1.21283 * 120.00043 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00029 * 359.97165 * 6 5 4 9 9 C 1.53000 * 109.47361 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.34343 * 305.70218 * 9 8 6 11 11 C 1.51102 * 110.38775 * 67.98491 * 9 8 6 12 12 C 1.30523 * 111.10262 * 135.24928 * 11 9 8 13 13 C 1.51101 * 111.10555 * 0.02562 * 12 11 9 14 14 C 1.54634 * 110.38968 * 183.41381 * 9 8 6 15 15 C 1.48311 * 104.39360 * 320.46949 * 5 4 2 16 16 C 1.54279 * 110.34467 * 122.17993 * 2 1 3 17 17 H 1.09003 * 110.34464 * 359.97438 * 16 2 1 18 18 N 1.46901 * 110.34084 * 237.84607 * 16 2 1 19 19 C 1.46902 * 110.99844 * 156.47084 * 18 16 2 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 16 21 21 O 1.21293 * 120.00255 * 0.02562 * 20 19 18 22 22 N 1.34783 * 120.00004 * 180.02562 * 20 19 18 23 23 C 1.37092 * 119.99804 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00499 * 0.02562 * 23 22 20 25 25 C 1.38956 * 119.99671 * 179.72159 * 23 22 20 26 26 N 1.31414 * 120.00152 * 0.27554 * 25 23 22 27 27 Si 1.86803 * 119.99914 * 180.27723 * 25 23 22 28 28 H 1.48498 * 109.47174 * 90.00084 * 27 25 23 29 29 H 1.48501 * 109.47062 * 210.00035 * 27 25 23 30 30 H 1.48504 * 109.46913 * 329.99834 * 27 25 23 31 31 H 1.08995 * 109.46954 * 297.82669 * 1 2 3 32 32 H 1.09001 * 109.47109 * 57.82298 * 1 2 3 33 33 H 1.08993 * 109.46953 * 177.82213 * 1 2 3 34 34 H 1.09001 * 110.40662 * 23.73233 * 4 2 1 35 35 H 1.08997 * 110.41143 * 146.16591 * 4 2 1 36 36 H 1.09000 * 109.47132 * 300.00273 * 8 6 5 37 37 H 1.09005 * 109.47169 * 60.00071 * 8 6 5 38 38 H 1.07992 * 124.44818 * 315.27978 * 11 9 8 39 39 H 1.08003 * 124.45034 * 179.97438 * 12 11 9 40 40 H 1.08997 * 110.38855 * 102.37216 * 13 12 11 41 41 H 1.09001 * 110.38833 * 224.63886 * 13 12 11 42 42 H 1.08999 * 111.03492 * 334.59125 * 14 9 8 43 43 H 1.09004 * 111.03721 * 98.52131 * 14 9 8 44 44 H 1.09005 * 110.38224 * 280.74033 * 15 5 4 45 45 H 1.08999 * 110.51284 * 158.25121 * 15 5 4 46 46 H 1.00895 * 111.00207 * 280.42427 * 18 16 2 47 47 H 1.09004 * 109.47131 * 60.00016 * 19 18 16 48 48 H 1.08994 * 109.47471 * 299.99766 * 19 18 16 49 49 H 0.97000 * 119.99715 * 359.97438 * 22 20 19 50 50 H 0.96991 * 119.99827 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0690 -0.7716 -1.2239 5 7 2.3176 -2.1429 -0.7213 6 6 2.0834 -3.3101 -1.3531 7 8 2.3435 -4.3597 -0.8040 8 6 1.4983 -3.3110 -2.7419 9 6 1.3347 -4.7533 -3.2255 10 1 2.2819 -5.2877 -3.1511 11 6 0.2674 -5.4599 -2.4226 12 6 -0.5295 -6.1429 -3.1986 13 6 -0.1261 -6.0062 -4.6483 14 6 0.8155 -4.7776 -4.6819 15 6 2.8818 -1.9417 0.6354 16 6 2.0664 -0.7704 1.2243 17 1 1.2398 -1.1485 1.8261 18 7 2.9312 0.0973 2.0349 19 6 2.9983 -0.3759 3.4240 20 6 3.8928 0.5366 4.2229 21 8 4.4220 1.4879 3.6879 22 7 4.1049 0.2956 5.5320 23 6 4.9182 1.1260 6.2588 24 1 5.3887 1.9735 5.7827 25 6 5.1322 0.8809 7.6098 26 7 4.5592 -0.1501 8.1893 27 14 6.2342 2.0168 8.6020 28 1 5.4190 3.1128 9.1846 29 1 6.8825 1.2476 9.6944 30 1 7.2773 2.5929 7.7158 31 1 -0.3633 0.4797 0.9088 32 1 -0.3633 0.5473 -0.8698 33 1 -0.3633 -1.0269 -0.0391 34 1 1.3253 -0.7879 -2.0206 35 1 2.9968 -0.3225 -1.5780 36 1 0.5253 -2.8200 -2.7265 37 1 2.1651 -2.7751 -3.4175 38 1 0.1756 -5.4064 -1.3479 39 1 -1.3668 -6.7295 -2.8502 40 1 0.4041 -6.8987 -4.9807 41 1 -1.0031 -5.8321 -5.2717 42 1 0.2631 -3.8675 -4.9155 43 1 1.6334 -4.9286 -5.3865 44 1 3.9371 -1.6761 0.5722 45 1 2.7502 -2.8385 1.2407 46 1 3.8535 0.1670 1.6317 47 1 3.4018 -1.3883 3.4438 48 1 1.9980 -0.3750 3.8569 49 1 3.6814 -0.4650 5.9599 50 1 4.7089 -0.3213 9.1322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214112109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = -76.788010 kcal Electronic energy + Delta-G solvation = -28553.214719 eV Core-core repulsion = 24579.264301 eV Total energy + Delta-G solvation = -3973.950418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.38462 -40.27349 -39.68285 -38.61210 -36.19965 -35.51316 -33.41805 -33.21223 -32.56755 -30.14528 -29.74408 -27.95547 -27.48542 -26.37439 -25.35463 -23.49396 -21.45770 -21.35782 -20.90787 -20.40250 -19.91339 -19.45671 -18.18924 -17.74739 -17.22532 -17.04415 -16.77981 -16.47927 -16.32695 -15.96398 -15.76867 -15.38390 -15.29212 -14.80667 -14.43548 -14.21713 -14.10052 -13.89924 -13.69648 -13.50415 -13.30404 -13.12838 -12.93645 -12.84191 -12.77326 -12.73455 -12.63231 -12.42921 -12.13553 -12.09780 -12.02839 -11.98411 -11.81183 -11.76190 -11.67612 -11.51506 -10.83810 -10.36256 -10.03132 -9.85437 -9.79283 -9.34694 -8.47672 -5.96703 1.37599 1.38071 1.41365 1.54282 1.62479 1.89852 2.03517 2.28358 2.86852 3.19420 3.36724 3.52706 3.60739 3.72258 3.74348 3.92677 3.97167 4.00857 4.19856 4.24946 4.31467 4.35687 4.40444 4.47465 4.53207 4.54398 4.57361 4.66844 4.70232 4.74472 4.77859 4.84586 4.89012 4.98212 4.98763 5.02404 5.10859 5.19444 5.29754 5.30869 5.39809 5.42898 5.44259 5.68807 5.88092 5.98493 6.07219 6.33117 6.56040 6.58067 7.10998 7.14306 7.54419 8.08993 8.69709 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025211 B = 0.001862 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.378815 B =15033.940111 C =15550.343375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.098 0.902 4 C 0.104 3.896 5 N -0.620 5.620 6 C 0.525 3.475 7 O -0.588 6.588 8 C -0.117 4.117 9 C -0.056 4.056 10 H 0.066 0.934 11 C -0.168 4.168 12 C -0.174 4.174 13 C -0.101 4.101 14 C -0.114 4.114 15 C 0.075 3.925 16 C 0.084 3.916 17 H 0.088 0.912 18 N -0.660 5.660 19 C 0.062 3.938 20 C 0.439 3.561 21 O -0.620 6.620 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.081 0.919 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.995 3.005 28 H -0.270 1.270 29 H -0.272 1.272 30 H -0.272 1.272 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.347 0.653 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 -7.723 -27.013 30.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.116 0.884 4 C -0.017 4.017 5 N -0.354 5.354 6 C 0.316 3.684 7 O -0.468 6.468 8 C -0.156 4.156 9 C -0.074 4.074 10 H 0.084 0.916 11 C -0.186 4.186 12 C -0.192 4.192 13 C -0.138 4.138 14 C -0.151 4.151 15 C -0.050 4.050 16 C -0.028 4.028 17 H 0.106 0.894 18 N -0.292 5.292 19 C -0.070 4.070 20 C 0.227 3.773 21 O -0.507 6.507 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.099 0.901 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.818 3.182 28 H -0.196 1.196 29 H -0.197 1.197 30 H -0.197 1.197 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.167 0.833 47 H 0.079 0.921 48 H 0.122 0.878 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.256 -7.344 -26.814 30.383 hybrid contribution 1.135 -0.955 1.636 2.209 sum -11.121 -8.299 -25.177 28.748 Atomic orbital electron populations 1.21764 0.93071 1.01641 1.02785 1.22133 0.97065 1.00137 0.92102 0.88388 1.22765 1.02304 0.79454 0.97210 1.49110 1.62693 1.06807 1.16807 1.21140 0.77100 0.81261 0.88901 1.90700 1.54699 1.32208 1.69178 1.21740 1.03677 0.99087 0.91145 1.20836 0.97870 0.93762 0.94976 0.91580 1.23247 0.96806 1.00010 0.98569 1.23528 0.99411 0.99774 0.96473 1.21434 0.99833 0.98664 0.93853 1.22599 0.99408 0.99082 0.94001 1.23132 0.97737 0.99485 0.84660 1.22669 0.95295 0.90102 0.94691 0.89386 1.60313 1.18091 1.50441 1.00351 1.21592 0.99968 0.95473 0.89962 1.20793 0.85710 0.88015 0.82829 1.90489 1.55270 1.33811 1.71109 1.41948 1.43407 1.27423 1.08293 1.19690 1.25144 1.09186 0.92328 0.90113 1.26078 0.99254 0.98644 0.97440 1.69678 1.44535 1.28790 1.13206 0.84904 0.77993 0.77769 0.77526 1.19575 1.19659 1.19654 0.93027 0.90205 0.93153 0.86988 0.89672 0.86708 0.86174 0.88412 0.85484 0.90583 0.89658 0.89101 0.89580 0.91346 0.91949 0.83254 0.92095 0.87823 0.77067 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.91 71.98 0.64 -1.28 16 2 C -0.09 -1.58 3.44 -9.89 -0.03 -1.62 16 3 H 0.10 1.80 7.95 -2.38 -0.02 1.78 16 4 C 0.10 1.36 6.47 86.54 0.56 1.92 16 5 N -0.62 -12.28 3.32 -807.51 -2.68 -14.96 16 6 C 0.52 11.64 7.69 87.66 0.67 12.31 16 7 O -0.59 -18.60 15.06 -3.04 -0.05 -18.65 16 8 C -0.12 -1.53 4.08 29.85 0.12 -1.41 16 9 C -0.06 -0.88 2.52 -10.86 -0.03 -0.90 16 10 H 0.07 1.33 7.96 -2.38 -0.02 1.31 16 11 C -0.17 -3.23 9.23 26.27 0.24 -2.99 16 12 C -0.17 -2.66 10.78 26.26 0.28 -2.37 16 13 C -0.10 -1.08 6.81 30.60 0.21 -0.87 16 14 C -0.11 -1.07 6.72 31.77 0.21 -0.85 16 15 C 0.08 1.78 6.70 86.50 0.58 2.36 16 16 C 0.08 1.89 3.02 45.82 0.14 2.03 16 17 H 0.09 2.04 7.41 -2.39 -0.02 2.02 16 18 N -0.66 -19.64 5.84 -490.89 -2.87 -22.50 16 19 C 0.06 2.13 6.01 85.56 0.51 2.64 16 20 C 0.44 20.81 7.82 87.66 0.69 21.50 16 21 O -0.62 -33.92 15.78 -3.07 -0.05 -33.97 16 22 N -0.57 -29.65 5.29 -306.97 -1.62 -31.28 16 23 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 24 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 25 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 26 N -0.92 -50.26 13.05 21.67 0.28 -49.98 16 27 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.80 7.03 -2.39 -0.02 0.78 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.11 1.06 7.95 -2.39 -0.02 1.04 16 37 H 0.12 0.95 8.14 -2.38 -0.02 0.94 16 38 H 0.10 2.36 7.44 -2.91 -0.02 2.34 16 39 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.56 7.91 -2.39 -0.02 0.54 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 44 H 0.07 1.66 7.58 -2.38 -0.02 1.65 16 45 H 0.06 1.72 7.89 -2.39 -0.02 1.70 16 46 H 0.35 10.82 7.82 -89.70 -0.70 10.11 16 47 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 48 H 0.10 3.23 8.07 -2.39 -0.02 3.21 16 49 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 50 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -73.71 404.31 0.64 -73.07 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.49 Total: 41.17 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.08 Total: 11.90 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -6.89 Total: -118.72 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.09 Total: -52.62 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.71 0.64 -73.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214112109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.718 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds