Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65657 * 2 1 4 4 C 1.54598 * 110.98770 * 236.84985 * 2 1 3 5 5 N 1.48113 * 103.42522 * 204.37263 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 H 1.09001 * 110.34191 * 54.29549 * 9 8 6 11 11 C 1.51101 * 110.38492 * 292.01409 * 9 8 6 12 12 C 1.30536 * 111.10027 * 224.75279 * 11 9 8 13 13 C 1.51097 * 111.10524 * 359.97438 * 12 11 9 14 14 C 1.54635 * 110.38727 * 176.58422 * 9 8 6 15 15 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 16 16 C 1.54004 * 107.08487 * 334.78016 * 15 5 4 17 17 H 1.09000 * 110.32450 * 120.29562 * 16 15 5 18 18 N 1.46898 * 110.32914 * 242.41235 * 16 15 5 19 19 C 1.46896 * 110.99983 * 273.54416 * 18 16 15 20 20 C 1.50703 * 109.47006 * 180.02562 * 19 18 16 21 21 O 1.21292 * 119.99937 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99694 * 180.02562 * 20 19 18 23 23 C 1.37103 * 119.99726 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99803 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00002 * 179.97438 * 23 22 20 26 26 N 1.31408 * 119.99886 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00039 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47014 * 90.00117 * 27 25 23 29 29 H 1.48499 * 109.46865 * 210.00029 * 27 25 23 30 30 H 1.48499 * 109.47077 * 329.99972 * 27 25 23 31 31 H 1.09000 * 109.47184 * 296.79889 * 1 2 3 32 32 H 1.08996 * 109.47279 * 56.80477 * 1 2 3 33 33 H 1.09006 * 109.46989 * 176.80289 * 1 2 3 34 34 H 1.09004 * 110.62019 * 85.85590 * 4 2 1 35 35 H 1.09004 * 110.54960 * 322.85200 * 4 2 1 36 36 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 37 37 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 38 38 H 1.07999 * 124.45073 * 44.76965 * 11 9 8 39 39 H 1.07996 * 124.44266 * 180.02562 * 12 11 9 40 40 H 1.08995 * 110.38858 * 135.24776 * 13 12 11 41 41 H 1.08999 * 110.38982 * 257.63047 * 13 12 11 42 42 H 1.08991 * 111.03743 * 261.47803 * 14 9 8 43 43 H 1.08997 * 111.03599 * 25.41427 * 14 9 8 44 44 H 1.08998 * 109.91504 * 94.14277 * 15 5 4 45 45 H 1.08996 * 109.91172 * 215.42025 * 15 5 4 46 46 H 1.00905 * 110.99758 * 149.58854 * 18 16 15 47 47 H 1.08994 * 109.47451 * 300.00004 * 19 18 16 48 48 H 1.09002 * 109.46870 * 60.00483 * 19 18 16 49 49 H 0.96994 * 120.00308 * 0.02562 * 22 20 19 50 50 H 0.97006 * 120.00045 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7587 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5999 -0.9937 8 6 4.5219 -0.8384 -2.9486 9 6 5.9215 -0.9740 -3.5516 10 1 6.3091 -1.9795 -3.3874 11 6 6.8540 0.0536 -2.9537 12 6 7.5767 0.6264 -3.8777 13 6 7.2469 0.0758 -5.2456 14 6 5.8908 -0.6488 -5.0631 15 6 3.2903 -1.5681 0.6639 16 6 2.0776 -0.7917 1.2100 17 1 1.3229 -1.4831 1.5849 18 7 2.4984 0.1293 2.2742 19 6 2.5207 -0.5476 3.5778 20 6 2.9554 0.4266 4.6422 21 8 3.2210 1.5719 4.3442 22 7 3.0500 0.0248 5.9252 23 6 3.4460 0.9110 6.8936 24 1 3.6825 1.9308 6.6282 25 6 3.5431 0.4970 8.2164 26 7 3.2558 -0.7441 8.5392 27 14 4.0833 1.7041 9.5356 28 1 2.8916 2.3893 10.0975 29 1 4.7892 0.9717 10.6175 30 1 4.9984 2.7109 8.9406 31 1 -0.3633 0.4633 0.9173 32 1 -0.3633 0.5626 -0.8599 33 1 -0.3633 -1.0261 -0.0573 34 1 2.1524 -0.1478 -2.0871 35 1 1.4612 -1.6600 -1.4145 36 1 3.8299 -1.4860 -3.4873 37 1 4.1896 0.1964 -3.0308 38 1 6.9149 0.2838 -1.9003 39 1 8.3140 1.3927 -3.6890 40 1 7.1505 0.8863 -5.9680 41 1 8.0132 -0.6302 -5.5656 42 1 5.8493 -1.5605 -5.6587 43 1 5.0585 0.0124 -5.3041 44 1 3.1179 -2.6402 0.7584 45 1 4.1895 -1.2845 1.2106 46 1 1.9062 0.9458 2.3008 47 1 1.5230 -0.9191 3.8114 48 1 3.2202 -1.3828 3.5415 49 1 2.8387 -0.8914 6.1634 50 1 3.3239 -1.0332 9.4626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214112110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = -54.868820 kcal Electronic energy + Delta-G solvation = -28650.392746 eV Core-core repulsion = 24677.392816 eV Total energy + Delta-G solvation = -3972.999930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43400 -39.12947 -38.21740 -37.58061 -34.69525 -33.78920 -32.57877 -31.85199 -31.20346 -29.19838 -28.91770 -26.76532 -26.52070 -25.23541 -24.09445 -22.14262 -20.85696 -20.32526 -19.56949 -19.14630 -18.69094 -17.86045 -17.27764 -16.59451 -16.19148 -15.96529 -15.66583 -15.11784 -14.99137 -14.81656 -14.54148 -14.15957 -13.96169 -13.67271 -13.51045 -13.17704 -13.00716 -12.69484 -12.53931 -12.34532 -12.14818 -12.06647 -12.06160 -11.87622 -11.59801 -11.54345 -11.51389 -11.39872 -11.22015 -11.17004 -11.01965 -10.98440 -10.77313 -10.38501 -10.20914 -9.82205 -9.50313 -9.05503 -8.79451 -8.45908 -8.10801 -7.95492 -6.40920 -3.81694 2.16454 2.60018 2.84058 3.18547 3.27237 3.33577 3.90855 4.05162 4.16387 4.25399 4.28762 4.37024 4.44098 4.59713 4.73845 4.81667 4.97209 5.06456 5.10374 5.12080 5.14372 5.20720 5.23413 5.25760 5.29820 5.32966 5.39345 5.52298 5.54630 5.59559 5.62074 5.64147 5.68486 5.80300 5.86693 5.91700 5.95559 5.99077 6.01702 6.04625 6.18298 6.30687 6.46171 6.76554 7.18952 7.46672 7.56077 7.61103 8.06953 8.13114 8.61835 9.18620 9.54888 10.06240 10.76789 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002156 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.681877 B =12981.981631 C =14176.920427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.095 0.905 4 C 0.107 3.893 5 N -0.620 5.620 6 C 0.530 3.470 7 O -0.534 6.534 8 C -0.126 4.126 9 C -0.055 4.055 10 H 0.090 0.910 11 C -0.140 4.140 12 C -0.184 4.184 13 C -0.098 4.098 14 C -0.122 4.122 15 C 0.111 3.889 16 C 0.077 3.923 17 H 0.061 0.939 18 N -0.658 5.658 19 C 0.049 3.951 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.269 1.269 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 -3.708 -26.986 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 H 0.113 0.887 4 C -0.017 4.017 5 N -0.354 5.354 6 C 0.319 3.681 7 O -0.410 6.410 8 C -0.166 4.166 9 C -0.073 4.073 10 H 0.108 0.892 11 C -0.158 4.158 12 C -0.202 4.202 13 C -0.136 4.136 14 C -0.159 4.159 15 C -0.012 4.012 16 C -0.034 4.034 17 H 0.079 0.921 18 N -0.292 5.292 19 C -0.084 4.084 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.173 0.827 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.507 -3.329 -26.892 27.213 hybrid contribution -0.870 -0.135 1.304 1.573 sum -3.377 -3.464 -25.588 26.042 Atomic orbital electron populations 1.21773 0.93642 1.02176 1.02532 1.22426 0.95962 1.00626 0.93940 0.88707 1.22518 0.83255 0.98450 0.97474 1.48754 1.08263 1.66572 1.11829 1.20326 0.81924 0.77546 0.88275 1.90731 1.29575 1.47439 1.73292 1.21691 0.99205 1.03451 0.92291 1.20841 0.92904 1.00010 0.93553 0.89235 1.23346 0.96958 0.95960 0.99505 1.23245 1.01098 1.00807 0.95049 1.21359 0.96851 0.99330 0.96014 1.22590 0.97742 1.00466 0.95131 1.22137 1.00232 0.97654 0.81202 1.22513 0.94612 0.94333 0.91924 0.92148 1.60148 1.58399 1.08134 1.02523 1.21748 1.00155 0.97232 0.89221 1.19780 0.85093 0.89089 0.83420 1.90526 1.54820 1.19970 1.81402 1.41861 1.59297 1.13366 1.05475 1.19700 1.41786 0.94913 0.86442 0.87932 1.25266 0.97564 0.96795 0.98366 1.69612 1.49006 1.15940 1.19736 0.85853 0.78777 0.79811 0.79825 1.20439 1.20912 1.19395 0.91933 0.92050 0.92293 0.90093 0.90783 0.88970 0.88821 0.85540 0.86024 0.91388 0.90942 0.90869 0.90923 0.91899 0.89027 0.82691 0.93713 0.89586 0.77458 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.17 37.16 0.34 -0.67 16 2 C -0.11 -0.99 3.10 -88.93 -0.28 -1.27 16 3 H 0.09 0.99 8.00 -51.93 -0.42 0.58 16 4 C 0.11 0.83 6.38 -2.32 -0.01 0.82 16 5 N -0.62 -7.11 3.29 -169.98 -0.56 -7.67 16 6 C 0.53 6.70 7.67 -10.98 -0.08 6.62 16 7 O -0.53 -8.97 15.13 5.55 0.08 -8.89 16 8 C -0.13 -1.08 4.04 -27.88 -0.11 -1.20 16 9 C -0.05 -0.51 2.52 -90.71 -0.23 -0.74 16 10 H 0.09 0.96 7.96 -51.93 -0.41 0.54 16 11 C -0.14 -1.56 9.23 -35.70 -0.33 -1.89 16 12 C -0.18 -1.75 10.78 -35.70 -0.38 -2.14 16 13 C -0.10 -0.74 6.81 -26.72 -0.18 -0.92 16 14 C -0.12 -0.84 6.72 -24.90 -0.17 -1.01 16 15 C 0.11 1.44 6.67 -2.98 -0.02 1.42 16 16 C 0.08 0.90 2.89 -66.34 -0.19 0.71 16 17 H 0.06 0.64 7.57 -51.93 -0.39 0.25 16 18 N -0.66 -10.38 5.80 -106.54 -0.62 -11.00 16 19 C 0.05 0.86 6.00 -4.98 -0.03 0.83 16 20 C 0.44 10.47 7.82 -10.98 -0.09 10.39 16 21 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 22 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 23 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 24 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 27 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.08 0.48 7.24 -51.93 -0.38 0.10 16 35 H 0.07 0.47 8.02 -51.93 -0.42 0.05 16 36 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 38 H 0.13 1.69 7.44 -52.49 -0.39 1.30 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.51 7.84 -51.93 -0.41 1.10 16 46 H 0.35 5.65 8.10 -39.29 -0.32 5.33 16 47 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 48 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 49 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -33.98 404.87 -9.70 -43.68 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -8.43 Total: 13.01 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.01 Total: 2.87 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.51 Total: -57.15 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.17 Total: -24.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.98 -9.70 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214112110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.191 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds