Wall clock time and date at job start Tue Mar 31 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65657 * 2 1 4 4 C 1.54598 * 110.98770 * 236.84985 * 2 1 3 5 5 N 1.48113 * 103.42522 * 204.37263 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 H 1.09001 * 110.34191 * 54.29549 * 9 8 6 11 11 C 1.51101 * 110.38492 * 292.01409 * 9 8 6 12 12 C 1.30536 * 111.10027 * 224.75279 * 11 9 8 13 13 C 1.51097 * 111.10524 * 359.97438 * 12 11 9 14 14 C 1.54635 * 110.38727 * 176.58422 * 9 8 6 15 15 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 16 16 C 1.54004 * 107.08487 * 334.78016 * 15 5 4 17 17 H 1.09000 * 110.32450 * 120.29562 * 16 15 5 18 18 N 1.46898 * 110.32914 * 242.41235 * 16 15 5 19 19 C 1.46896 * 110.99983 * 273.54416 * 18 16 15 20 20 C 1.50703 * 109.47006 * 180.02562 * 19 18 16 21 21 O 1.21292 * 119.99937 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99694 * 180.02562 * 20 19 18 23 23 C 1.37103 * 119.99726 * 179.97438 * 22 20 19 24 24 H 1.08001 * 119.99803 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00002 * 179.97438 * 23 22 20 26 26 N 1.31408 * 119.99886 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00039 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47014 * 90.00117 * 27 25 23 29 29 H 1.48499 * 109.46865 * 210.00029 * 27 25 23 30 30 H 1.48499 * 109.47077 * 329.99972 * 27 25 23 31 31 H 1.09000 * 109.47184 * 296.79889 * 1 2 3 32 32 H 1.08996 * 109.47279 * 56.80477 * 1 2 3 33 33 H 1.09006 * 109.46989 * 176.80289 * 1 2 3 34 34 H 1.09004 * 110.62019 * 85.85590 * 4 2 1 35 35 H 1.09004 * 110.54960 * 322.85200 * 4 2 1 36 36 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 37 37 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 38 38 H 1.07999 * 124.45073 * 44.76965 * 11 9 8 39 39 H 1.07996 * 124.44266 * 180.02562 * 12 11 9 40 40 H 1.08995 * 110.38858 * 135.24776 * 13 12 11 41 41 H 1.08999 * 110.38982 * 257.63047 * 13 12 11 42 42 H 1.08991 * 111.03743 * 261.47803 * 14 9 8 43 43 H 1.08997 * 111.03599 * 25.41427 * 14 9 8 44 44 H 1.08998 * 109.91504 * 94.14277 * 15 5 4 45 45 H 1.08996 * 109.91172 * 215.42025 * 15 5 4 46 46 H 1.00905 * 110.99758 * 149.58854 * 18 16 15 47 47 H 1.08994 * 109.47451 * 300.00004 * 19 18 16 48 48 H 1.09002 * 109.46870 * 60.00483 * 19 18 16 49 49 H 0.96994 * 120.00308 * 0.02562 * 22 20 19 50 50 H 0.97006 * 120.00045 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7587 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5999 -0.9937 8 6 4.5219 -0.8384 -2.9486 9 6 5.9215 -0.9740 -3.5516 10 1 6.3091 -1.9795 -3.3874 11 6 6.8540 0.0536 -2.9537 12 6 7.5767 0.6264 -3.8777 13 6 7.2469 0.0758 -5.2456 14 6 5.8908 -0.6488 -5.0631 15 6 3.2903 -1.5681 0.6639 16 6 2.0776 -0.7917 1.2100 17 1 1.3229 -1.4831 1.5849 18 7 2.4984 0.1293 2.2742 19 6 2.5207 -0.5476 3.5778 20 6 2.9554 0.4266 4.6422 21 8 3.2210 1.5719 4.3442 22 7 3.0500 0.0248 5.9252 23 6 3.4460 0.9110 6.8936 24 1 3.6825 1.9308 6.6282 25 6 3.5431 0.4970 8.2164 26 7 3.2558 -0.7441 8.5392 27 14 4.0833 1.7041 9.5356 28 1 2.8916 2.3893 10.0975 29 1 4.7892 0.9717 10.6175 30 1 4.9984 2.7109 8.9406 31 1 -0.3633 0.4633 0.9173 32 1 -0.3633 0.5626 -0.8599 33 1 -0.3633 -1.0261 -0.0573 34 1 2.1524 -0.1478 -2.0871 35 1 1.4612 -1.6600 -1.4145 36 1 3.8299 -1.4860 -3.4873 37 1 4.1896 0.1964 -3.0308 38 1 6.9149 0.2838 -1.9003 39 1 8.3140 1.3927 -3.6890 40 1 7.1505 0.8863 -5.9680 41 1 8.0132 -0.6302 -5.5656 42 1 5.8493 -1.5605 -5.6587 43 1 5.0585 0.0124 -5.3041 44 1 3.1179 -2.6402 0.7584 45 1 4.1895 -1.2845 1.2106 46 1 1.9062 0.9458 2.3008 47 1 1.5230 -0.9191 3.8114 48 1 3.2202 -1.3828 3.5415 49 1 2.8387 -0.8914 6.1634 50 1 3.3239 -1.0332 9.4626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214112110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:27 Heat of formation + Delta-G solvation = -78.725840 kcal Electronic energy + Delta-G solvation = -28651.427264 eV Core-core repulsion = 24677.392816 eV Total energy + Delta-G solvation = -3974.034448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33740 -40.27889 -39.67280 -38.60354 -36.21684 -35.54431 -33.51213 -33.23106 -32.59396 -30.12273 -29.73892 -28.12040 -27.30512 -26.37536 -25.56412 -23.10396 -21.57889 -21.24481 -20.89762 -20.41190 -19.90733 -19.48971 -18.30827 -17.68941 -17.34264 -16.97478 -16.73093 -16.52288 -16.29376 -16.07347 -15.69805 -15.59276 -15.20625 -14.90259 -14.68830 -14.18045 -13.90959 -13.82149 -13.54829 -13.45501 -13.27246 -13.19921 -12.96867 -12.83343 -12.77811 -12.69479 -12.65558 -12.45283 -12.17243 -12.15458 -12.05312 -11.97494 -11.93249 -11.69916 -11.55026 -11.53631 -10.81527 -10.38566 -10.04818 -9.80822 -9.74143 -9.35810 -8.49421 -5.98436 1.35671 1.36494 1.39418 1.52513 1.66708 1.98238 2.01497 2.26902 2.87482 3.17548 3.35311 3.49236 3.52414 3.71457 3.72389 3.97341 3.98536 4.13100 4.21214 4.26013 4.35260 4.37548 4.46657 4.48260 4.54442 4.55485 4.57592 4.64712 4.67509 4.72603 4.76784 4.86329 4.91955 4.97932 5.00798 5.05365 5.10987 5.21627 5.27891 5.31395 5.37963 5.43636 5.44738 5.69182 5.87667 5.96068 6.08469 6.37289 6.56722 6.59790 7.09385 7.19988 7.52524 8.07843 8.67937 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.002156 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.681877 B =12981.981631 C =14176.920427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 H 0.077 0.923 4 C 0.108 3.892 5 N -0.622 5.622 6 C 0.518 3.482 7 O -0.590 6.590 8 C -0.115 4.115 9 C -0.055 4.055 10 H 0.069 0.931 11 C -0.172 4.172 12 C -0.175 4.175 13 C -0.100 4.100 14 C -0.111 4.111 15 C 0.109 3.891 16 C 0.080 3.920 17 H 0.082 0.918 18 N -0.678 5.678 19 C 0.066 3.934 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.572 5.572 23 C -0.335 4.335 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.919 5.919 27 Si 0.994 3.006 28 H -0.268 1.268 29 H -0.270 1.270 30 H -0.275 1.275 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.350 0.650 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 -4.204 -29.481 30.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.095 0.905 4 C -0.014 4.014 5 N -0.355 5.355 6 C 0.310 3.690 7 O -0.471 6.471 8 C -0.155 4.155 9 C -0.073 4.073 10 H 0.087 0.913 11 C -0.190 4.190 12 C -0.193 4.193 13 C -0.136 4.136 14 C -0.148 4.148 15 C -0.015 4.015 16 C -0.030 4.030 17 H 0.100 0.900 18 N -0.312 5.312 19 C -0.067 4.067 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.193 1.193 29 H -0.195 1.195 30 H -0.200 1.200 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.170 0.830 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.230 0.770 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.664 -3.847 -29.407 30.022 hybrid contribution -0.158 0.033 2.075 2.081 sum -4.822 -3.814 -27.333 28.016 Atomic orbital electron populations 1.21739 0.91502 1.03385 1.02828 1.22403 0.97539 0.99359 0.93044 0.90502 1.22811 0.81165 0.99821 0.97594 1.48916 1.09654 1.65871 1.11105 1.21209 0.81296 0.76611 0.89927 1.90703 1.31715 1.50022 1.74653 1.21735 0.99565 1.04905 0.89273 1.20838 0.92837 0.98157 0.95507 0.91321 1.23278 0.99455 0.98160 0.98135 1.23544 0.99765 0.99810 0.96191 1.21435 0.97539 1.00030 0.94635 1.22598 0.97870 1.01538 0.92840 1.22066 0.98728 0.98515 0.82198 1.22615 0.94424 0.94306 0.91675 0.89998 1.60081 1.59476 1.09055 1.02548 1.21572 1.01594 0.95422 0.88071 1.20884 0.83258 0.89556 0.83904 1.90489 1.56213 1.22256 1.82126 1.41934 1.59816 1.13241 1.05976 1.19657 1.44143 0.94660 0.87980 0.90428 1.26065 0.96928 0.98603 0.99762 1.69671 1.48775 1.16973 1.20583 0.84918 0.78559 0.77631 0.77160 1.19292 1.19493 1.20002 0.93105 0.90171 0.90769 0.87379 0.87982 0.85456 0.87246 0.89231 0.85823 0.89589 0.90347 0.89109 0.89088 0.90767 0.93671 0.82993 0.90721 0.88741 0.76950 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.17 71.98 0.66 -0.81 16 2 C -0.10 -1.65 3.10 -9.70 -0.03 -1.68 16 3 H 0.08 1.53 8.00 -2.39 -0.02 1.51 16 4 C 0.11 1.33 6.38 86.61 0.55 1.88 16 5 N -0.62 -13.79 3.29 -810.08 -2.67 -16.46 16 6 C 0.52 13.25 7.67 87.66 0.67 13.92 16 7 O -0.59 -21.37 15.13 -3.04 -0.05 -21.41 16 8 C -0.12 -1.77 4.04 29.85 0.12 -1.65 16 9 C -0.05 -0.99 2.52 -10.85 -0.03 -1.02 16 10 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 11 C -0.17 -4.04 9.23 26.25 0.24 -3.80 16 12 C -0.18 -3.31 10.78 26.25 0.28 -3.03 16 13 C -0.10 -1.27 6.81 30.60 0.21 -1.06 16 14 C -0.11 -1.21 6.72 31.78 0.21 -0.99 16 15 C 0.11 2.84 6.67 86.53 0.58 3.42 16 16 C 0.08 1.78 2.89 45.81 0.13 1.92 16 17 H 0.08 1.52 7.57 -2.39 -0.02 1.50 16 18 N -0.68 -21.62 5.80 -490.99 -2.85 -24.47 16 19 C 0.07 2.31 6.00 85.56 0.51 2.82 16 20 C 0.44 21.41 7.82 87.66 0.69 22.10 16 21 O -0.62 -35.70 15.78 -3.07 -0.05 -35.75 16 22 N -0.57 -30.20 5.29 -306.98 -1.62 -31.82 16 23 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 24 H 0.08 4.83 7.16 -2.91 -0.02 4.80 16 25 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 26 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 27 Si 0.99 43.86 29.55 68.60 2.03 45.88 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 30 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.60 8.11 -2.38 -0.02 0.58 16 34 H 0.11 0.80 7.24 -2.38 -0.02 0.78 16 35 H 0.10 0.78 8.02 -2.39 -0.02 0.76 16 36 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.11 1.36 7.90 -2.39 -0.02 1.34 16 38 H 0.09 2.72 7.44 -2.91 -0.02 2.70 16 39 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.69 7.91 -2.39 -0.02 0.67 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.60 7.84 -2.39 -0.02 1.58 16 46 H 0.35 11.38 8.10 -89.69 -0.73 10.66 16 47 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 48 H 0.09 3.17 8.11 -2.39 -0.02 3.15 16 49 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 50 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -79.77 404.87 0.65 -79.12 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.52 Total: 42.03 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.08 Total: 13.04 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -6.85 Total: -122.90 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.09 Total: -57.16 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -79.77 0.65 -79.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214112110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.395 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds