Wall clock time and date at job start Tue Mar 31 2020 18:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.91501 * 2 1 4 4 C 1.54908 * 111.00392 * 236.10235 * 2 1 3 5 5 N 1.47428 * 104.82984 * 204.91723 * 4 2 1 6 6 C 1.34785 * 125.64419 * 204.16574 * 5 4 2 7 7 O 1.21280 * 120.00119 * 354.93246 * 6 5 4 8 8 C 1.50706 * 119.99513 * 174.93706 * 6 5 4 9 9 H 1.08997 * 109.63856 * 334.14755 * 8 6 5 10 10 C 1.53027 * 109.64311 * 94.57193 * 8 6 5 11 11 C 1.50161 * 110.09466 * 168.90181 * 10 8 6 12 12 C 1.29442 * 124.14830 * 343.28101 * 11 10 8 13 13 C 1.50069 * 124.07280 * 0.24098 * 12 11 10 14 14 C 1.53025 * 110.15228 * 342.86885 * 13 12 11 15 15 C 1.47016 * 108.70780 * 24.12334 * 5 4 2 16 16 C 1.54326 * 107.26875 * 358.94146 * 15 5 4 17 17 H 1.09002 * 110.71911 * 96.34554 * 16 15 5 18 18 N 1.46894 * 110.72194 * 219.44147 * 16 15 5 19 19 C 1.46900 * 111.00144 * 273.54723 * 18 16 15 20 20 C 1.50697 * 109.47164 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00008 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99934 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99980 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99961 * 359.97438 * 23 22 20 25 25 C 1.38958 * 119.99883 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99956 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99745 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47425 * 60.00094 * 27 25 23 29 29 H 1.48498 * 109.47015 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47185 * 299.99715 * 27 25 23 31 31 H 1.09000 * 109.46892 * 296.09730 * 1 2 3 32 32 H 1.08997 * 109.47001 * 56.09802 * 1 2 3 33 33 H 1.09005 * 109.46908 * 176.09544 * 1 2 3 34 34 H 1.08998 * 110.37326 * 86.07569 * 4 2 1 35 35 H 1.08998 * 110.46191 * 323.79549 * 4 2 1 36 36 H 1.09001 * 109.35010 * 289.32428 * 10 8 6 37 37 H 1.09001 * 109.35463 * 48.90635 * 10 8 6 38 38 H 1.07999 * 117.89113 * 163.07301 * 11 10 8 39 39 H 1.07997 * 117.96520 * 180.21678 * 12 11 10 40 40 H 1.09008 * 109.35547 * 222.65875 * 13 12 11 41 41 H 1.08999 * 109.36235 * 103.07882 * 13 12 11 42 42 H 1.09006 * 109.63998 * 289.75584 * 14 13 12 43 43 H 1.08993 * 109.81612 * 169.22440 * 14 13 12 44 44 H 1.09001 * 109.88245 * 239.52731 * 15 5 4 45 45 H 1.08996 * 110.01115 * 118.42999 * 15 5 4 46 46 H 1.00896 * 111.00244 * 37.50005 * 18 16 15 47 47 H 1.09007 * 109.47296 * 300.00017 * 19 18 16 48 48 H 1.09002 * 109.47016 * 60.00084 * 19 18 16 49 49 H 0.97000 * 120.00250 * 359.97438 * 22 20 19 50 50 H 0.97004 * 119.99735 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7733 6 6 4.4481 -1.5601 -1.5941 7 8 4.2756 -1.5865 -2.7943 8 6 5.8040 -1.8820 -1.0204 9 1 5.9189 -1.3910 -0.0541 10 6 5.9433 -3.3962 -0.8478 11 6 7.3689 -3.7510 -0.5369 12 6 8.3740 -2.9594 -0.7331 13 6 8.2552 -1.5728 -1.2946 14 6 6.8981 -1.3958 -1.9792 15 6 3.4675 -1.2741 0.6959 16 6 2.0862 -0.8078 1.2022 17 1 1.4479 -1.6632 1.4239 18 7 2.2291 0.0519 2.3846 19 6 2.2897 -0.7497 3.6142 20 6 2.4353 0.1646 4.8032 21 8 2.4834 1.3658 4.6423 22 7 2.5121 -0.3525 6.0455 23 6 2.6451 0.4792 7.1272 24 1 2.6887 1.5487 6.9839 25 6 2.7238 -0.0539 8.4080 26 7 2.6702 -1.3553 8.5824 27 14 2.9043 1.0794 9.8819 28 1 1.7386 1.9972 9.9464 29 1 2.9649 0.2691 11.1249 30 1 4.1521 1.8728 9.7464 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1719 -2.0837 35 1 1.4525 -1.6703 -1.4044 36 1 5.2987 -3.7277 -0.0337 37 1 5.6425 -3.8940 -1.7697 38 1 7.5671 -4.7274 -0.1202 39 1 9.3595 -3.3191 -0.4765 40 1 9.0508 -1.4078 -2.0213 41 1 8.3499 -0.8467 -0.4872 42 1 6.8705 -1.9852 -2.8958 43 1 6.7377 -0.3439 -2.2151 44 1 4.2427 -0.5997 1.0598 45 1 3.6663 -2.2883 1.0422 46 1 3.0383 0.6489 2.3020 47 1 1.3735 -1.3318 3.7140 48 1 3.1451 -1.4237 3.5667 49 1 2.4733 -1.3132 6.1742 50 1 2.7248 -1.7274 9.4766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214129088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:37 Heat of formation + Delta-G solvation = -66.115331 kcal Electronic energy + Delta-G solvation = -29108.371390 eV Core-core repulsion = 25134.883774 eV Total energy + Delta-G solvation = -3973.487615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72028 -39.02958 -38.15017 -37.42023 -34.69892 -33.82936 -32.94885 -31.44898 -31.26175 -31.06388 -28.94756 -26.84830 -26.22932 -24.31673 -23.87088 -23.04814 -22.06133 -20.61097 -19.46101 -19.24228 -18.24627 -17.93502 -17.30065 -16.64548 -16.36023 -15.97583 -15.32562 -15.12164 -14.88675 -14.55333 -14.36030 -14.08142 -13.88834 -13.80681 -13.71404 -13.44126 -13.32409 -12.86448 -12.81929 -12.67791 -12.57208 -12.43572 -12.28951 -12.17371 -11.71425 -11.56248 -11.36915 -11.23645 -11.07988 -11.07166 -11.02256 -10.77269 -10.70176 -10.47298 -10.25112 -9.85020 -9.54158 -9.29761 -8.88388 -8.53402 -8.17397 -8.00801 -6.45791 -3.86754 1.99236 2.41297 2.72408 3.17293 3.23538 3.27689 3.84827 3.95743 4.11021 4.22747 4.36814 4.38831 4.39930 4.53840 4.79985 4.86287 4.92993 4.93386 4.98777 5.08080 5.10149 5.14976 5.21081 5.23823 5.29693 5.32160 5.45590 5.50882 5.53888 5.58422 5.61511 5.62909 5.64999 5.70835 5.85238 5.85794 5.89184 5.95403 6.06322 6.10369 6.20798 6.26708 6.33349 6.63709 7.07774 7.27784 7.50469 7.51306 7.95749 8.01488 8.56345 9.13563 9.49372 10.00464 10.71748 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.002590 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.075884 B =10806.479505 C =12631.033722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.090 0.910 4 C 0.108 3.892 5 N -0.615 5.615 6 C 0.535 3.465 7 O -0.542 6.542 8 C -0.104 4.104 9 H 0.092 0.908 10 C -0.077 4.077 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.093 4.093 14 C -0.100 4.100 15 C 0.067 3.933 16 C 0.083 3.917 17 H 0.097 0.903 18 N -0.651 5.651 19 C 0.048 3.952 20 C 0.439 3.561 21 O -0.583 6.583 22 N -0.562 5.562 23 C -0.301 4.301 24 H 0.103 0.897 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.931 3.069 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.352 0.648 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -5.941 -18.878 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.108 0.892 4 C -0.015 4.015 5 N -0.349 5.349 6 C 0.324 3.676 7 O -0.419 6.419 8 C -0.126 4.126 9 H 0.110 0.890 10 C -0.114 4.114 11 C -0.172 4.172 12 C -0.172 4.172 13 C -0.130 4.130 14 C -0.138 4.138 15 C -0.058 4.058 16 C -0.029 4.029 17 H 0.115 0.885 18 N -0.282 5.282 19 C -0.084 4.084 20 C 0.225 3.775 21 O -0.468 6.468 22 N -0.199 5.199 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.178 4.178 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.173 0.827 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.481 -5.151 -19.408 20.574 hybrid contribution 1.042 -0.643 1.064 1.622 sum 5.523 -5.795 -18.345 20.015 Atomic orbital electron populations 1.21627 0.93176 1.01771 1.02751 1.22354 0.96861 0.99640 0.92307 0.89165 1.22392 0.82646 0.98380 0.98046 1.48462 1.12507 1.67014 1.06897 1.20347 0.85109 0.76098 0.86071 1.90688 1.83861 1.52506 1.14832 1.21377 0.91972 0.98209 1.01019 0.88964 1.20349 0.95390 0.93162 1.02536 1.21975 0.93999 0.99920 1.01278 1.22077 0.98668 0.96074 1.00392 1.20491 0.97338 0.95056 1.00072 1.21448 0.92538 1.01804 0.98028 1.23068 1.00432 1.02045 0.80286 1.22779 0.93608 0.95721 0.90816 0.88538 1.60154 1.48549 1.20184 0.99337 1.21751 1.01393 0.95248 0.90053 1.19760 0.84698 0.89057 0.84016 1.90532 1.55652 1.15263 1.85304 1.41854 1.63651 1.09686 1.04666 1.19654 1.47164 0.92187 0.84032 0.87955 1.25260 0.97249 0.96287 0.99040 1.69599 1.50250 1.10550 1.23856 0.85920 0.79135 0.79442 0.79757 1.19853 1.20964 1.19889 0.90894 0.92644 0.92770 0.90427 0.91320 0.90560 0.90162 0.87463 0.87707 0.90567 0.90563 0.90612 0.91269 0.91074 0.91152 0.82695 0.89379 0.93716 0.77459 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.31 37.16 0.35 -0.91 16 2 C -0.09 -0.92 3.32 -88.47 -0.29 -1.22 16 3 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 4 C 0.11 1.11 6.36 -2.53 -0.02 1.09 16 5 N -0.61 -6.73 3.33 -170.52 -0.57 -7.30 16 6 C 0.53 6.51 6.84 -10.98 -0.08 6.43 16 7 O -0.54 -8.32 16.71 5.56 0.09 -8.23 16 8 C -0.10 -1.03 2.18 -91.55 -0.20 -1.23 16 9 H 0.09 0.86 6.93 -51.93 -0.36 0.50 16 10 C -0.08 -0.69 5.44 -28.13 -0.15 -0.84 16 11 C -0.15 -1.28 9.80 -35.85 -0.35 -1.63 16 12 C -0.15 -1.24 9.80 -35.90 -0.35 -1.60 16 13 C -0.09 -0.72 6.12 -28.18 -0.17 -0.90 16 14 C -0.10 -0.94 4.84 -26.51 -0.13 -1.07 16 15 C 0.07 0.67 5.87 -3.07 -0.02 0.65 16 16 C 0.08 0.88 2.71 -65.88 -0.18 0.71 16 17 H 0.10 0.98 7.80 -51.93 -0.40 0.58 16 18 N -0.65 -9.23 5.98 -106.06 -0.63 -9.86 16 19 C 0.05 0.76 6.02 -4.98 -0.03 0.73 16 20 C 0.44 9.82 7.82 -10.99 -0.09 9.73 16 21 O -0.58 -15.20 15.78 5.55 0.09 -15.11 16 22 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 23 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 24 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 27 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.07 0.66 7.99 -51.93 -0.41 0.25 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.11 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.72 7.06 -51.93 -0.37 0.35 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.35 5.25 7.86 -39.29 -0.31 4.95 16 47 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 48 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 49 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 50 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -31.75 403.41 -9.68 -41.44 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -8.44 Total: 12.22 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.95 Total: 2.14 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.54 Total: -54.17 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.18 Total: -23.34 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.75 -9.68 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214129088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.678 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds