Wall clock time and date at job start Tue Mar 31 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.91501 * 2 1 4 4 C 1.54908 * 111.00392 * 236.10235 * 2 1 3 5 5 N 1.47428 * 104.82984 * 204.91723 * 4 2 1 6 6 C 1.34785 * 125.64419 * 204.16574 * 5 4 2 7 7 O 1.21280 * 120.00119 * 354.93246 * 6 5 4 8 8 C 1.50706 * 119.99513 * 174.93706 * 6 5 4 9 9 H 1.08997 * 109.63856 * 334.14755 * 8 6 5 10 10 C 1.53027 * 109.64311 * 94.57193 * 8 6 5 11 11 C 1.50161 * 110.09466 * 168.90181 * 10 8 6 12 12 C 1.29442 * 124.14830 * 343.28101 * 11 10 8 13 13 C 1.50069 * 124.07280 * 0.24098 * 12 11 10 14 14 C 1.53025 * 110.15228 * 342.86885 * 13 12 11 15 15 C 1.47016 * 108.70780 * 24.12334 * 5 4 2 16 16 C 1.54326 * 107.26875 * 358.94146 * 15 5 4 17 17 H 1.09002 * 110.71911 * 96.34554 * 16 15 5 18 18 N 1.46894 * 110.72194 * 219.44147 * 16 15 5 19 19 C 1.46900 * 111.00144 * 273.54723 * 18 16 15 20 20 C 1.50697 * 109.47164 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00008 * 0.02562 * 20 19 18 22 22 N 1.34776 * 119.99934 * 180.02562 * 20 19 18 23 23 C 1.37101 * 119.99980 * 179.97438 * 22 20 19 24 24 H 1.07994 * 119.99961 * 359.97438 * 23 22 20 25 25 C 1.38958 * 119.99883 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99956 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99745 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47425 * 60.00094 * 27 25 23 29 29 H 1.48498 * 109.47015 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47185 * 299.99715 * 27 25 23 31 31 H 1.09000 * 109.46892 * 296.09730 * 1 2 3 32 32 H 1.08997 * 109.47001 * 56.09802 * 1 2 3 33 33 H 1.09005 * 109.46908 * 176.09544 * 1 2 3 34 34 H 1.08998 * 110.37326 * 86.07569 * 4 2 1 35 35 H 1.08998 * 110.46191 * 323.79549 * 4 2 1 36 36 H 1.09001 * 109.35010 * 289.32428 * 10 8 6 37 37 H 1.09001 * 109.35463 * 48.90635 * 10 8 6 38 38 H 1.07999 * 117.89113 * 163.07301 * 11 10 8 39 39 H 1.07997 * 117.96520 * 180.21678 * 12 11 10 40 40 H 1.09008 * 109.35547 * 222.65875 * 13 12 11 41 41 H 1.08999 * 109.36235 * 103.07882 * 13 12 11 42 42 H 1.09006 * 109.63998 * 289.75584 * 14 13 12 43 43 H 1.08993 * 109.81612 * 169.22440 * 14 13 12 44 44 H 1.09001 * 109.88245 * 239.52731 * 15 5 4 45 45 H 1.08996 * 110.01115 * 118.42999 * 15 5 4 46 46 H 1.00896 * 111.00244 * 37.50005 * 18 16 15 47 47 H 1.09007 * 109.47296 * 300.00017 * 19 18 16 48 48 H 1.09002 * 109.47016 * 60.00084 * 19 18 16 49 49 H 0.97000 * 120.00250 * 359.97438 * 22 20 19 50 50 H 0.97004 * 119.99735 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7733 6 6 4.4481 -1.5601 -1.5941 7 8 4.2756 -1.5865 -2.7943 8 6 5.8040 -1.8820 -1.0204 9 1 5.9189 -1.3910 -0.0541 10 6 5.9433 -3.3962 -0.8478 11 6 7.3689 -3.7510 -0.5369 12 6 8.3740 -2.9594 -0.7331 13 6 8.2552 -1.5728 -1.2946 14 6 6.8981 -1.3958 -1.9792 15 6 3.4675 -1.2741 0.6959 16 6 2.0862 -0.8078 1.2022 17 1 1.4479 -1.6632 1.4239 18 7 2.2291 0.0519 2.3846 19 6 2.2897 -0.7497 3.6142 20 6 2.4353 0.1646 4.8032 21 8 2.4834 1.3658 4.6423 22 7 2.5121 -0.3525 6.0455 23 6 2.6451 0.4792 7.1272 24 1 2.6887 1.5487 6.9839 25 6 2.7238 -0.0539 8.4080 26 7 2.6702 -1.3553 8.5824 27 14 2.9043 1.0794 9.8819 28 1 1.7386 1.9972 9.9464 29 1 2.9649 0.2691 11.1249 30 1 4.1521 1.8728 9.7464 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1719 -2.0837 35 1 1.4525 -1.6703 -1.4044 36 1 5.2987 -3.7277 -0.0337 37 1 5.6425 -3.8940 -1.7697 38 1 7.5671 -4.7274 -0.1202 39 1 9.3595 -3.3191 -0.4765 40 1 9.0508 -1.4078 -2.0213 41 1 8.3499 -0.8467 -0.4872 42 1 6.8705 -1.9852 -2.8958 43 1 6.7377 -0.3439 -2.2151 44 1 4.2427 -0.5997 1.0598 45 1 3.6663 -2.2883 1.0422 46 1 3.0383 0.6489 2.3020 47 1 1.3735 -1.3318 3.7140 48 1 3.1451 -1.4237 3.5667 49 1 2.4733 -1.3132 6.1742 50 1 2.7248 -1.7274 9.4766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214129088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:36 Heat of formation + Delta-G solvation = -86.984666 kcal Electronic energy + Delta-G solvation = -29109.276352 eV Core-core repulsion = 25134.883774 eV Total energy + Delta-G solvation = -3974.392578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61219 -40.23984 -39.51835 -38.33323 -36.15207 -35.46524 -33.85292 -33.21999 -32.16260 -31.73582 -30.04664 -27.72827 -27.63374 -25.82062 -24.70981 -23.81909 -22.95931 -21.58639 -20.88524 -20.31159 -19.86917 -18.98327 -18.14373 -17.75378 -17.52024 -16.95417 -16.73129 -16.28749 -16.05159 -15.95257 -15.67660 -15.29281 -14.94652 -14.73319 -14.60677 -14.45805 -14.21835 -14.01798 -13.74096 -13.55952 -13.50539 -13.39302 -13.31218 -13.25765 -13.20792 -12.92691 -12.79903 -12.41021 -12.19047 -12.12235 -11.98312 -11.91522 -11.79385 -11.63066 -11.47724 -11.41532 -10.75978 -10.31157 -9.98813 -9.91878 -9.78622 -9.31964 -8.44591 -5.92718 1.36124 1.41164 1.43571 1.49814 1.53697 1.85651 2.09196 2.30670 2.88191 3.23219 3.28300 3.41914 3.61079 3.64746 3.69375 3.76821 4.00390 4.08653 4.14545 4.24571 4.26703 4.34362 4.35975 4.41131 4.47232 4.54562 4.57353 4.62075 4.63718 4.66513 4.75576 4.77019 4.85234 4.87239 4.92611 4.99420 5.09325 5.16191 5.18754 5.29373 5.30020 5.43282 5.47351 5.72727 5.90536 6.02044 6.11045 6.31210 6.42313 6.62947 7.02865 7.15526 7.59924 8.15320 8.72423 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.002590 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.075884 B =10806.479505 C =12631.033722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 H 0.077 0.923 4 C 0.109 3.891 5 N -0.614 5.614 6 C 0.531 3.469 7 O -0.580 6.580 8 C -0.101 4.101 9 H 0.100 0.900 10 C -0.074 4.074 11 C -0.163 4.163 12 C -0.158 4.158 13 C -0.091 4.091 14 C -0.100 4.100 15 C 0.070 3.930 16 C 0.087 3.913 17 H 0.112 0.888 18 N -0.662 5.662 19 C 0.064 3.936 20 C 0.438 3.562 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.333 4.333 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.919 5.919 27 Si 0.989 3.011 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.272 1.272 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.347 0.653 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -7.085 -18.583 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.013 4.013 5 N -0.347 5.347 6 C 0.321 3.679 7 O -0.460 6.460 8 C -0.122 4.122 9 H 0.118 0.882 10 C -0.112 4.112 11 C -0.181 4.181 12 C -0.176 4.176 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.055 4.055 16 C -0.024 4.024 17 H 0.130 0.870 18 N -0.294 5.294 19 C -0.068 4.068 20 C 0.226 3.774 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.463 4.463 24 H 0.096 0.904 25 C -0.211 4.211 26 N -0.560 5.560 27 Si 0.813 3.187 28 H -0.199 1.199 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.167 0.833 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.231 0.769 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.804 -6.320 -19.107 20.691 hybrid contribution 0.911 -0.248 0.887 1.296 sum 5.716 -6.567 -18.221 20.194 Atomic orbital electron populations 1.21589 0.92365 1.02655 1.02291 1.22273 0.97422 0.98850 0.91927 0.90422 1.22413 0.82575 0.98641 0.97710 1.48524 1.12551 1.66234 1.07363 1.20762 0.85961 0.75470 0.85660 1.90667 1.84525 1.54375 1.16451 1.21396 0.90640 0.99068 1.01101 0.88231 1.20330 0.96240 0.92195 1.02398 1.22077 0.93559 1.00671 1.01772 1.22263 0.99334 0.96003 0.99960 1.20504 0.96558 0.95311 1.00394 1.21427 0.93554 1.01109 0.97676 1.23072 0.99885 1.03046 0.79474 1.22804 0.94356 0.95691 0.89525 0.87046 1.60129 1.48530 1.20868 0.99843 1.21616 1.03517 0.94038 0.87675 1.20906 0.82127 0.89424 0.84990 1.90505 1.56812 1.17634 1.86113 1.41920 1.64516 1.09612 1.04986 1.19608 1.49250 0.91676 0.85756 0.90394 1.25976 0.96447 0.97729 1.00941 1.69654 1.50234 1.11492 1.24659 0.85045 0.78901 0.77813 0.76953 1.19861 1.19606 1.19698 0.92507 0.91745 0.91414 0.91292 0.90242 0.89647 0.91197 0.86256 0.86317 0.89374 0.90051 0.91918 0.91909 0.91073 0.89393 0.83343 0.87382 0.90893 0.76909 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.31 71.98 0.67 -1.54 16 2 C -0.08 -1.59 3.32 -9.40 -0.03 -1.62 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.11 2.09 6.36 86.85 0.55 2.65 16 5 N -0.61 -12.62 3.33 -811.79 -2.70 -15.32 16 6 C 0.53 12.61 6.84 87.66 0.60 13.21 16 7 O -0.58 -17.96 16.71 -3.03 -0.05 -18.01 16 8 C -0.10 -1.88 2.18 -11.40 -0.02 -1.91 16 9 H 0.10 1.71 6.93 -2.39 -0.02 1.69 16 10 C -0.07 -1.23 5.44 29.69 0.16 -1.07 16 11 C -0.16 -2.43 9.80 27.07 0.27 -2.16 16 12 C -0.16 -2.25 9.80 27.04 0.27 -1.98 16 13 C -0.09 -1.29 6.12 29.66 0.18 -1.11 16 14 C -0.10 -1.83 4.84 30.73 0.15 -1.68 16 15 C 0.07 1.23 5.87 86.73 0.51 1.74 16 16 C 0.09 1.67 2.71 46.10 0.12 1.79 16 17 H 0.11 1.87 7.80 -2.39 -0.02 1.85 16 18 N -0.66 -17.72 5.98 -489.45 -2.93 -20.65 16 19 C 0.06 1.88 6.02 85.56 0.52 2.39 16 20 C 0.44 19.43 7.82 87.66 0.69 20.11 16 21 O -0.62 -32.94 15.78 -3.05 -0.05 -32.99 16 22 N -0.57 -27.96 5.29 -306.99 -1.62 -29.58 16 23 C -0.33 -18.37 9.68 84.04 0.81 -17.55 16 24 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 25 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 26 N -0.92 -48.27 13.05 21.67 0.28 -47.99 16 27 Si 0.99 41.98 29.55 68.60 2.03 44.00 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 30 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.96 8.08 -2.38 -0.02 0.94 16 34 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 35 H 0.08 1.38 7.99 -2.39 -0.02 1.36 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.30 8.08 -2.38 -0.02 1.28 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.29 7.06 -2.39 -0.02 1.28 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.35 10.02 7.86 -89.70 -0.70 9.31 16 47 H 0.11 2.83 8.09 -2.38 -0.02 2.81 16 48 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 49 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16 50 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -69.08 403.41 0.37 -68.71 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.50 Total: 40.66 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.90 Total: 11.16 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -6.97 Total: -113.54 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.10 Total: -51.00 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.08 0.37 -68.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214129088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.271 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds