Wall clock time and date at job start Tue Mar 31 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32991 * 120.00196 * 2 1 4 4 C 1.47098 * 119.99802 * 2.45554 * 3 2 1 5 5 O 1.21618 * 120.00113 * 354.80140 * 4 3 2 6 6 N 1.34781 * 120.00160 * 174.80042 * 4 3 2 7 7 C 1.48122 * 127.02915 * 359.68543 * 6 4 3 8 8 C 1.54592 * 103.41820 * 219.28412 * 7 6 4 9 9 H 1.09004 * 110.58009 * 81.17131 * 8 7 6 10 10 C 1.53001 * 110.98810 * 204.37395 * 8 7 6 11 11 C 1.54619 * 102.91583 * 322.86804 * 8 7 6 12 12 H 1.09003 * 110.32813 * 262.80914 * 11 8 7 13 13 N 1.46901 * 110.32986 * 140.59366 * 11 8 7 14 14 C 1.46893 * 110.99978 * 157.92707 * 13 11 8 15 15 C 1.50709 * 109.47019 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99517 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00029 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99871 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99902 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99997 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47057 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47294 * 119.99440 * 22 20 18 25 25 H 1.48493 * 109.47186 * 240.00029 * 22 20 18 26 26 C 1.47479 * 127.03468 * 179.97438 * 6 4 3 27 27 C 1.50703 * 119.99858 * 180.02562 * 2 1 3 28 28 C 1.53002 * 117.51915 * 345.36484 * 27 2 1 29 29 C 1.52995 * 117.50176 * 53.99785 * 27 2 1 30 30 H 1.09003 * 109.47274 * 178.24443 * 1 2 3 31 31 H 1.08999 * 109.47119 * 298.24347 * 1 2 3 32 32 H 1.08994 * 109.47362 * 58.24738 * 1 2 3 33 33 H 1.07994 * 120.00066 * 182.45003 * 3 2 1 34 34 H 1.08996 * 110.66481 * 337.76800 * 7 6 4 35 35 H 1.09005 * 110.66072 * 100.88623 * 7 6 4 36 36 H 1.09005 * 109.47275 * 173.64857 * 10 8 7 37 37 H 1.08997 * 109.47006 * 293.65434 * 10 8 7 38 38 H 1.09005 * 109.47145 * 53.65476 * 10 8 7 39 39 H 1.00904 * 110.99577 * 281.88299 * 13 11 8 40 40 H 1.08994 * 109.47370 * 299.99739 * 14 13 11 41 41 H 1.09004 * 109.47361 * 59.99899 * 14 13 11 42 42 H 0.97004 * 119.99907 * 359.97438 * 17 15 14 43 43 H 0.97000 * 119.99420 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.91500 * 273.87839 * 26 6 4 45 45 H 1.09002 * 109.91527 * 35.15925 * 26 6 4 46 46 H 1.09000 * 115.55215 * 199.67119 * 27 2 1 47 47 H 1.08998 * 117.50356 * 214.97385 * 28 27 2 48 48 H 1.08998 * 117.50096 * 359.97438 * 28 27 2 49 49 H 1.08998 * 117.49929 * 359.97438 * 29 27 2 50 50 H 1.09002 * 117.50227 * 144.99919 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4375 2.4250 0.0546 5 8 0.2224 2.4288 0.0043 6 7 2.1111 3.5876 0.1604 7 6 3.5797 3.7636 0.2398 8 6 3.7495 4.8986 1.2755 9 1 3.6778 4.5057 2.2898 10 6 5.0775 5.6310 1.0731 11 6 2.5567 5.8318 0.9643 12 1 2.8761 6.6538 0.3236 13 7 1.9758 6.3504 2.2099 14 6 1.2286 7.5913 1.9657 15 6 0.6482 8.0918 3.2633 16 8 0.8380 7.4751 4.2904 17 7 -0.0826 9.2241 3.2823 18 6 -0.6102 9.6797 4.4629 19 1 -0.4405 9.1310 5.3775 20 6 -1.3640 10.8467 4.4824 21 7 -1.5709 11.5140 3.3693 22 14 -2.0835 11.4671 6.0908 23 1 -1.7088 10.5418 7.1902 24 1 -1.5510 12.8227 6.3811 25 1 -3.5629 11.5298 5.9798 26 6 1.5366 4.9443 0.2267 27 6 2.2605 -1.3051 -0.0006 28 6 1.4769 -2.5739 0.3417 29 6 1.9229 -2.3153 -1.0989 30 1 -0.3634 -1.0272 -0.0315 31 1 -0.3633 0.4863 0.9053 32 1 -0.3634 0.5408 -0.8738 33 1 3.2512 1.1521 -0.0400 34 1 4.0583 2.8492 0.5904 35 1 3.9839 4.0642 -0.7269 36 1 5.1221 6.4932 1.7386 37 1 5.9029 4.9555 1.2978 38 1 5.1536 5.9663 0.0387 39 1 1.3910 5.6572 2.6522 40 1 1.8998 8.3444 1.5531 41 1 0.4222 7.3967 1.2585 42 1 -0.2347 9.7171 2.4609 43 1 -2.0969 12.3289 3.3831 44 1 1.3710 5.3270 -0.7804 45 1 0.5964 4.9228 0.7777 46 1 3.2975 -1.2495 0.3305 47 1 1.9984 -3.3529 0.8978 48 1 0.4162 -2.4649 0.5678 49 1 1.1554 -2.0362 -1.8208 50 1 2.7377 -2.9243 -1.4905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214237588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:26 Heat of formation + Delta-G solvation = -24.605679 kcal Electronic energy + Delta-G solvation = -28440.559759 eV Core-core repulsion = 24468.872138 eV Total energy + Delta-G solvation = -3971.687622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40484 -38.95514 -38.18634 -37.65444 -34.66886 -33.76916 -33.43953 -32.57536 -31.20234 -29.38792 -27.83713 -26.48789 -26.20531 -24.53899 -23.75257 -22.81814 -22.24927 -20.51052 -19.85605 -19.18775 -18.39860 -17.85936 -17.42803 -16.45457 -16.29917 -15.86749 -15.43265 -15.14553 -14.83256 -14.68573 -14.47100 -14.12005 -13.86003 -13.66646 -13.52462 -13.26231 -13.19261 -12.70939 -12.65080 -12.47274 -12.31659 -12.18222 -12.09908 -11.85947 -11.60041 -11.55347 -11.51488 -11.32928 -11.20503 -11.04551 -11.03251 -10.89633 -10.77844 -10.32984 -10.20922 -9.69895 -9.50747 -9.29770 -8.84470 -8.42324 -8.03600 -7.94308 -6.40434 -3.81073 1.08811 2.82335 3.09278 3.17656 3.28117 3.35590 3.51501 3.91997 4.03186 4.09094 4.29324 4.37702 4.40057 4.46825 4.48588 4.59275 4.78419 4.88536 4.93183 5.09230 5.15223 5.16090 5.18196 5.27421 5.27880 5.33686 5.40950 5.45370 5.57641 5.60659 5.61644 5.63673 5.67480 5.68473 5.77878 5.80664 5.89738 5.98401 6.06693 6.10432 6.19803 6.27058 6.27458 6.33466 7.19911 7.43926 7.56923 7.60718 8.07854 8.10400 8.62542 9.19398 9.55669 10.07035 10.77380 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.002031 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.398138 B =13783.879111 C =14778.902405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.000 4.000 3 C -0.224 4.224 4 C 0.563 3.437 5 O -0.541 6.541 6 N -0.616 5.616 7 C 0.102 3.898 8 C -0.095 4.095 9 H 0.092 0.908 10 C -0.137 4.137 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.655 5.655 14 C 0.048 3.952 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.075 3.925 27 C -0.134 4.134 28 C -0.172 4.172 29 C -0.165 4.165 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.352 0.648 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.098 0.902 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.966 -22.372 -12.965 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.245 4.245 4 C 0.356 3.644 5 O -0.420 6.420 6 N -0.350 5.350 7 C -0.021 4.021 8 C -0.115 4.115 9 H 0.110 0.890 10 C -0.195 4.195 11 C -0.033 4.033 12 H 0.113 0.887 13 N -0.287 5.287 14 C -0.085 4.085 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.050 4.050 27 C -0.152 4.152 28 C -0.209 4.209 29 C -0.202 4.202 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.133 0.867 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.117 0.883 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.837 -22.346 -12.125 28.044 hybrid contribution -1.109 0.539 -0.260 1.260 sum 10.728 -21.807 -12.386 27.277 Atomic orbital electron populations 1.21111 0.90645 1.01262 1.04658 1.21795 0.96226 0.92316 0.89846 1.22203 1.00028 0.91413 1.10862 1.18149 0.86764 0.83004 0.76532 1.90802 1.13610 1.86856 1.50783 1.48584 1.07795 1.05640 1.72964 1.22651 0.80656 0.99395 0.99385 1.22235 0.94921 0.94483 0.99867 0.88976 1.21685 0.95213 1.00736 1.01833 1.22676 0.93616 0.96003 0.90964 0.88717 1.60218 1.40250 1.06809 1.21432 1.21740 0.96829 0.93062 0.96823 1.19793 0.83912 0.83748 0.89919 1.90529 1.63152 1.58642 1.34399 1.41865 1.45537 1.21665 1.10965 1.19755 1.28100 1.06676 0.88253 0.87869 1.25268 0.97608 0.96436 0.98699 1.69624 1.40403 1.17716 1.26563 0.85798 0.78422 0.78595 0.81516 1.19220 1.20742 1.20784 1.22979 0.98519 0.82101 1.01356 1.21281 0.99710 0.88385 1.05835 1.23110 1.01289 0.98049 0.98452 1.22985 1.03851 1.01343 0.92045 0.92657 0.89740 0.89683 0.85680 0.90055 0.90848 0.91281 0.92580 0.92733 0.82686 0.89429 0.93737 0.77456 0.91940 0.91529 0.90358 0.86653 0.88173 0.87813 0.88323 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.06 36.00 0.29 -0.95 16 2 C 0.00 0.00 5.83 -101.17 -0.59 -0.59 16 3 C -0.22 -2.27 9.13 -37.81 -0.35 -2.61 16 4 C 0.56 7.46 7.80 -12.66 -0.10 7.36 16 5 O -0.54 -8.89 13.43 5.26 0.07 -8.82 16 6 N -0.62 -7.28 3.29 -171.36 -0.56 -7.84 16 7 C 0.10 0.88 6.32 -2.31 -0.01 0.87 16 8 C -0.10 -0.95 3.35 -88.93 -0.30 -1.25 16 9 H 0.09 1.07 8.06 -51.93 -0.42 0.66 16 10 C -0.14 -1.15 9.17 37.16 0.34 -0.81 16 11 C 0.08 0.94 2.88 -66.33 -0.19 0.75 16 12 H 0.09 1.02 7.57 -51.93 -0.39 0.63 16 13 N -0.66 -10.46 5.85 -106.52 -0.62 -11.08 16 14 C 0.05 0.84 6.00 -4.98 -0.03 0.81 16 15 C 0.44 10.51 7.82 -10.98 -0.09 10.43 16 16 O -0.58 -16.06 15.78 5.54 0.09 -15.97 16 17 N -0.56 -14.45 5.29 -10.96 -0.06 -14.50 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 19 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 22 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.08 0.94 6.55 -2.97 -0.02 0.92 16 27 C -0.13 -0.93 6.01 -91.77 -0.55 -1.48 16 28 C -0.17 -1.01 9.80 -26.73 -0.26 -1.28 16 29 C -0.17 -0.94 10.10 -26.73 -0.27 -1.21 16 30 H 0.05 0.44 5.66 -51.93 -0.29 0.15 16 31 H 0.08 1.03 7.33 -51.93 -0.38 0.65 16 32 H 0.08 1.00 7.12 -51.93 -0.37 0.63 16 33 H 0.13 0.96 6.75 -52.49 -0.35 0.61 16 34 H 0.08 0.57 6.71 -51.93 -0.35 0.22 16 35 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 39 H 0.35 6.18 7.93 -39.29 -0.31 5.87 16 40 H 0.09 1.38 8.08 -51.93 -0.42 0.97 16 41 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 42 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 46 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.63 6.19 -51.93 -0.32 0.31 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -33.39 405.08 -9.70 -43.09 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -8.05 Total: 13.91 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.37 Total: 2.86 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.52 Total: -57.47 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.16 Total: -24.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.39 -9.70 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214237588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.483 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds