Wall clock time and date at job start Tue Mar 31 2020 18:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32991 * 120.00196 * 2 1 4 4 C 1.47098 * 119.99802 * 2.45554 * 3 2 1 5 5 O 1.21618 * 120.00113 * 354.80140 * 4 3 2 6 6 N 1.34781 * 120.00160 * 174.80042 * 4 3 2 7 7 C 1.48122 * 127.02915 * 359.68543 * 6 4 3 8 8 C 1.54592 * 103.41820 * 219.28412 * 7 6 4 9 9 H 1.09004 * 110.58009 * 81.17131 * 8 7 6 10 10 C 1.53001 * 110.98810 * 204.37395 * 8 7 6 11 11 C 1.54619 * 102.91583 * 322.86804 * 8 7 6 12 12 H 1.09003 * 110.32813 * 262.80914 * 11 8 7 13 13 N 1.46901 * 110.32986 * 140.59366 * 11 8 7 14 14 C 1.46893 * 110.99978 * 157.92707 * 13 11 8 15 15 C 1.50709 * 109.47019 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99517 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00029 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99871 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99902 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99997 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00161 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47057 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47294 * 119.99440 * 22 20 18 25 25 H 1.48493 * 109.47186 * 240.00029 * 22 20 18 26 26 C 1.47479 * 127.03468 * 179.97438 * 6 4 3 27 27 C 1.50703 * 119.99858 * 180.02562 * 2 1 3 28 28 C 1.53002 * 117.51915 * 345.36484 * 27 2 1 29 29 C 1.52995 * 117.50176 * 53.99785 * 27 2 1 30 30 H 1.09003 * 109.47274 * 178.24443 * 1 2 3 31 31 H 1.08999 * 109.47119 * 298.24347 * 1 2 3 32 32 H 1.08994 * 109.47362 * 58.24738 * 1 2 3 33 33 H 1.07994 * 120.00066 * 182.45003 * 3 2 1 34 34 H 1.08996 * 110.66481 * 337.76800 * 7 6 4 35 35 H 1.09005 * 110.66072 * 100.88623 * 7 6 4 36 36 H 1.09005 * 109.47275 * 173.64857 * 10 8 7 37 37 H 1.08997 * 109.47006 * 293.65434 * 10 8 7 38 38 H 1.09005 * 109.47145 * 53.65476 * 10 8 7 39 39 H 1.00904 * 110.99577 * 281.88299 * 13 11 8 40 40 H 1.08994 * 109.47370 * 299.99739 * 14 13 11 41 41 H 1.09004 * 109.47361 * 59.99899 * 14 13 11 42 42 H 0.97004 * 119.99907 * 359.97438 * 17 15 14 43 43 H 0.97000 * 119.99420 * 180.02562 * 21 20 18 44 44 H 1.09001 * 109.91500 * 273.87839 * 26 6 4 45 45 H 1.09002 * 109.91527 * 35.15925 * 26 6 4 46 46 H 1.09000 * 115.55215 * 199.67119 * 27 2 1 47 47 H 1.08998 * 117.50356 * 214.97385 * 28 27 2 48 48 H 1.08998 * 117.50096 * 359.97438 * 28 27 2 49 49 H 1.08998 * 117.49929 * 359.97438 * 29 27 2 50 50 H 1.09002 * 117.50227 * 144.99919 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4375 2.4250 0.0546 5 8 0.2224 2.4288 0.0043 6 7 2.1111 3.5876 0.1604 7 6 3.5797 3.7636 0.2398 8 6 3.7495 4.8986 1.2755 9 1 3.6778 4.5057 2.2898 10 6 5.0775 5.6310 1.0731 11 6 2.5567 5.8318 0.9643 12 1 2.8761 6.6538 0.3236 13 7 1.9758 6.3504 2.2099 14 6 1.2286 7.5913 1.9657 15 6 0.6482 8.0918 3.2633 16 8 0.8380 7.4751 4.2904 17 7 -0.0826 9.2241 3.2823 18 6 -0.6102 9.6797 4.4629 19 1 -0.4405 9.1310 5.3775 20 6 -1.3640 10.8467 4.4824 21 7 -1.5709 11.5140 3.3693 22 14 -2.0835 11.4671 6.0908 23 1 -1.7088 10.5418 7.1902 24 1 -1.5510 12.8227 6.3811 25 1 -3.5629 11.5298 5.9798 26 6 1.5366 4.9443 0.2267 27 6 2.2605 -1.3051 -0.0006 28 6 1.4769 -2.5739 0.3417 29 6 1.9229 -2.3153 -1.0989 30 1 -0.3634 -1.0272 -0.0315 31 1 -0.3633 0.4863 0.9053 32 1 -0.3634 0.5408 -0.8738 33 1 3.2512 1.1521 -0.0400 34 1 4.0583 2.8492 0.5904 35 1 3.9839 4.0642 -0.7269 36 1 5.1221 6.4932 1.7386 37 1 5.9029 4.9555 1.2978 38 1 5.1536 5.9663 0.0387 39 1 1.3910 5.6572 2.6522 40 1 1.8998 8.3444 1.5531 41 1 0.4222 7.3967 1.2585 42 1 -0.2347 9.7171 2.4609 43 1 -2.0969 12.3289 3.3831 44 1 1.3710 5.3270 -0.7804 45 1 0.5964 4.9228 0.7777 46 1 3.2975 -1.2495 0.3305 47 1 1.9984 -3.3529 0.8978 48 1 0.4162 -2.4649 0.5678 49 1 1.1554 -2.0362 -1.8208 50 1 2.7377 -2.9243 -1.4905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214237588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:25 Heat of formation + Delta-G solvation = -47.309708 kcal Electronic energy + Delta-G solvation = -28441.544280 eV Core-core repulsion = 24468.872138 eV Total energy + Delta-G solvation = -3972.672142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35645 -40.23674 -39.50257 -38.54806 -36.21141 -35.52900 -34.16708 -33.51435 -33.24873 -30.46628 -28.87242 -27.68206 -27.21273 -26.01730 -24.78926 -23.26570 -23.15603 -21.52902 -20.91413 -20.69739 -19.92470 -19.15076 -18.34871 -17.77319 -17.30646 -16.85508 -16.72844 -16.29763 -16.28420 -16.06077 -15.62940 -15.34212 -15.28113 -14.85458 -14.60910 -14.21069 -14.02336 -13.96508 -13.64050 -13.53040 -13.48844 -13.34134 -13.17172 -12.95398 -12.92311 -12.78364 -12.46154 -12.43239 -12.16381 -12.13661 -12.05047 -11.92362 -11.86962 -11.63524 -11.53908 -11.35517 -10.68024 -10.38404 -10.11208 -10.03930 -9.73523 -9.25970 -8.49031 -5.97865 0.29139 1.34834 1.40034 1.54470 1.93188 2.02469 2.19580 2.27477 2.86348 3.01266 3.17917 3.32718 3.48140 3.55858 3.67966 3.82496 3.93730 4.07502 4.08183 4.10828 4.12722 4.20725 4.29339 4.36785 4.45679 4.53256 4.54790 4.61191 4.67157 4.70041 4.73595 4.79999 4.83049 4.90462 4.98071 5.03669 5.11270 5.15349 5.21731 5.25084 5.35097 5.39115 5.47943 5.50673 5.53883 5.88198 6.08288 6.23524 6.53832 6.57499 7.10188 7.13366 7.53266 8.08722 8.68566 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.002031 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.398138 B =13783.879111 C =14778.902405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.003 3.997 3 C -0.232 4.232 4 C 0.550 3.450 5 O -0.588 6.588 6 N -0.619 5.619 7 C 0.106 3.894 8 C -0.091 4.091 9 H 0.071 0.929 10 C -0.131 4.131 11 C 0.082 3.918 12 H 0.115 0.885 13 N -0.665 5.665 14 C 0.063 3.937 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.994 3.006 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.271 1.271 26 C 0.077 3.923 27 C -0.143 4.143 28 C -0.173 4.173 29 C -0.157 4.157 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.156 0.844 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.339 0.661 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.132 0.868 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.070 -23.303 -14.276 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.001 3.999 3 C -0.253 4.253 4 C 0.344 3.656 5 O -0.471 6.471 6 N -0.351 5.351 7 C -0.016 4.016 8 C -0.111 4.111 9 H 0.089 0.911 10 C -0.189 4.189 11 C -0.028 4.028 12 H 0.133 0.867 13 N -0.296 5.296 14 C -0.069 4.069 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.193 1.193 25 H -0.196 1.196 26 C -0.048 4.048 27 C -0.161 4.161 28 C -0.209 4.209 29 C -0.194 4.194 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.173 0.827 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.131 0.869 41 H 0.079 0.921 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.150 0.850 47 H 0.134 0.866 48 H 0.116 0.884 49 H 0.111 0.889 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.985 -23.257 -13.477 30.300 hybrid contribution -1.780 0.782 0.130 1.949 sum 12.205 -22.476 -13.347 28.849 Atomic orbital electron populations 1.21004 0.91992 1.01843 1.02525 1.22015 0.95610 0.93703 0.88543 1.22292 1.01221 0.89863 1.11890 1.18809 0.86551 0.84315 0.75931 1.90779 1.15671 1.87581 1.53043 1.48710 1.09331 1.04942 1.72104 1.22866 0.78644 0.99859 1.00219 1.22203 0.94942 0.94601 0.99306 0.91053 1.21645 0.94527 1.00150 1.02534 1.22823 0.93792 0.96788 0.89444 0.86736 1.60277 1.39513 1.06060 1.23762 1.21614 0.97795 0.94285 0.93193 1.20895 0.82509 0.82540 0.91669 1.90494 1.64321 1.59586 1.36762 1.41930 1.46103 1.22460 1.10452 1.19699 1.30331 1.07830 0.88548 0.90439 1.26058 0.97214 0.95938 1.02107 1.69679 1.40363 1.17965 1.28005 0.84862 0.78018 0.78133 0.77258 1.19898 1.19338 1.19640 1.22885 0.97401 0.83108 1.01451 1.21343 1.00273 0.87194 1.07317 1.23203 1.01046 0.97718 0.98955 1.23075 1.04143 1.00465 0.91721 0.90585 0.92305 0.91610 0.82690 0.87869 0.88266 0.93193 0.90806 0.90858 0.84210 0.86875 0.92068 0.76915 0.91254 0.90435 0.93646 0.84978 0.86614 0.88434 0.88861 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.06 71.24 0.57 -1.96 16 2 C 0.00 0.06 5.83 -17.62 -0.10 -0.04 16 3 C -0.23 -4.43 9.13 23.43 0.21 -4.22 16 4 C 0.55 14.74 7.80 86.57 0.68 15.41 16 5 O -0.59 -20.52 13.43 -4.09 -0.05 -20.57 16 6 N -0.62 -14.17 3.29 -814.30 -2.68 -16.85 16 7 C 0.11 1.53 6.32 86.61 0.55 2.07 16 8 C -0.09 -1.64 3.35 -9.70 -0.03 -1.67 16 9 H 0.07 1.62 8.06 -2.38 -0.02 1.60 16 10 C -0.13 -1.82 9.17 71.98 0.66 -1.16 16 11 C 0.08 1.86 2.88 45.81 0.13 2.00 16 12 H 0.11 2.17 7.57 -2.39 -0.02 2.15 16 13 N -0.67 -21.38 5.85 -490.94 -2.87 -24.25 16 14 C 0.06 2.21 6.00 85.56 0.51 2.72 16 15 C 0.44 21.38 7.82 87.66 0.69 22.06 16 16 O -0.62 -35.84 15.78 -3.08 -0.05 -35.89 16 17 N -0.57 -30.11 5.29 -306.97 -1.62 -31.73 16 18 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 22 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.08 1.91 6.55 86.54 0.57 2.48 16 27 C -0.14 -1.66 6.01 -11.54 -0.07 -1.73 16 28 C -0.17 -1.67 9.80 30.60 0.30 -1.37 16 29 C -0.16 -1.41 10.10 30.59 0.31 -1.10 16 30 H 0.08 1.24 5.66 -2.39 -0.01 1.22 16 31 H 0.06 1.57 7.33 -2.39 -0.02 1.55 16 32 H 0.07 1.66 7.12 -2.39 -0.02 1.65 16 33 H 0.16 1.91 6.75 -2.91 -0.02 1.89 16 34 H 0.10 1.08 6.71 -2.39 -0.02 1.06 16 35 H 0.10 1.00 8.02 -2.38 -0.02 0.99 16 36 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.76 8.11 -2.38 -0.02 0.75 16 39 H 0.34 12.45 7.93 -89.69 -0.71 11.74 16 40 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 41 H 0.06 1.95 8.11 -2.38 -0.02 1.93 16 42 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 43 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.43 7.54 -2.39 -0.02 1.41 16 46 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.10 1.06 6.19 -2.39 -0.01 1.04 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -76.23 405.08 0.80 -75.43 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.48 Total: 43.50 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 6.25 Total: 14.56 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -6.89 Total: -122.89 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -0.10 Total: -56.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -76.23 0.80 -75.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214237588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.118 kcal (2) G-P(sol) polarization free energy of solvation -76.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds