Wall clock time and date at job start Tue Mar 31 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47099 * 120.00049 * 2 1 4 4 O 1.21622 * 119.99804 * 186.79935 * 3 2 1 5 5 N 1.34775 * 120.00282 * 6.79436 * 3 2 1 6 6 C 1.48113 * 127.03403 * 185.13386 * 5 3 2 7 7 C 1.54601 * 103.42585 * 219.28909 * 6 5 3 8 8 H 1.09001 * 110.57247 * 81.16676 * 7 6 5 9 9 C 1.52995 * 110.98886 * 204.37751 * 7 6 5 10 10 C 1.54616 * 102.90940 * 322.87206 * 7 6 5 11 11 H 1.09000 * 110.32596 * 262.80734 * 10 7 6 12 12 N 1.46896 * 110.32786 * 140.58918 * 10 7 6 13 13 C 1.46909 * 111.00102 * 157.92380 * 12 10 7 14 14 C 1.50699 * 109.47129 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99965 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99975 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99974 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99903 * 359.97438 * 17 16 14 19 19 C 1.38942 * 119.99848 * 180.02562 * 17 16 14 20 20 N 1.31418 * 120.00010 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00325 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46950 * 89.99983 * 21 19 17 23 23 H 1.48504 * 109.47632 * 210.00217 * 21 19 17 24 24 H 1.48507 * 109.47161 * 330.00350 * 21 19 17 25 25 C 1.47480 * 127.03133 * 5.45558 * 5 3 2 26 26 C 1.32997 * 119.99863 * 179.97438 * 2 1 3 27 27 C 1.51584 * 135.78018 * 0.02562 * 26 2 1 28 28 C 1.53847 * 86.75293 * 205.14765 * 27 26 2 29 29 C 1.51877 * 135.78898 * 179.97438 * 26 2 1 30 30 H 1.09007 * 109.46828 * 274.41222 * 1 2 3 31 31 H 1.08998 * 109.47221 * 34.40725 * 1 2 3 32 32 H 1.08998 * 109.47296 * 154.40895 * 1 2 3 33 33 H 1.09001 * 110.66652 * 337.77263 * 6 5 3 34 34 H 1.08998 * 110.65921 * 100.89162 * 6 5 3 35 35 H 1.09008 * 109.46955 * 173.65408 * 9 7 6 36 36 H 1.09001 * 109.47151 * 293.64740 * 9 7 6 37 37 H 1.08997 * 109.47301 * 53.65077 * 9 7 6 38 38 H 1.00903 * 111.00225 * 281.87822 * 12 10 7 39 39 H 1.09000 * 109.46913 * 299.99757 * 13 12 10 40 40 H 1.09000 * 109.47027 * 60.00102 * 13 12 10 41 41 H 0.96996 * 119.99821 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99856 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.91816 * 273.87341 * 25 5 3 44 44 H 1.09004 * 109.91776 * 35.15678 * 25 5 3 45 45 H 1.08991 * 113.66600 * 90.68060 * 27 26 2 46 46 H 1.09000 * 113.74692 * 319.61943 * 27 26 2 47 47 H 1.08993 * 113.65901 * 89.68725 * 28 27 26 48 48 H 1.09001 * 113.65420 * 220.64031 * 28 27 26 49 49 H 1.09000 * 113.74995 * 40.42233 * 29 26 2 50 50 H 1.08996 * 113.66333 * 269.26956 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4523 1.2776 -0.1247 5 7 1.5758 2.4370 0.1381 6 6 2.1400 3.8040 0.0548 7 6 1.3917 4.5697 1.1700 8 1 1.8460 4.3726 2.1411 9 6 1.3658 6.0719 0.8810 10 6 -0.0336 3.9743 1.1015 11 1 -0.6853 4.6190 0.5118 12 7 -0.5780 3.7966 2.4542 13 6 -2.0459 3.7436 2.4281 14 6 -2.5670 3.5617 3.8304 15 8 -1.7918 3.4835 4.7600 16 7 -3.8943 3.4861 4.0516 17 6 -4.3683 3.3201 5.3273 18 1 -3.6780 3.2495 6.1550 19 6 -5.7366 3.2415 5.5553 20 7 -6.1910 3.0819 6.7780 21 14 -6.9305 3.3628 4.1237 22 1 -7.1940 2.0052 3.5826 23 1 -8.2048 3.9652 4.5914 24 1 -6.3418 4.2143 3.0589 25 6 0.1364 2.6089 0.4096 26 6 2.1720 -1.1518 0.0005 27 6 1.7996 -2.6212 0.0007 28 6 3.1685 -2.8781 0.6540 29 6 3.6334 -1.5651 0.0002 30 1 -0.3633 0.0791 1.0247 31 1 -0.3633 0.8478 -0.5807 32 1 -0.3634 -0.9268 -0.4439 33 1 3.2120 3.7903 0.2514 34 1 1.9321 4.2471 -0.9192 35 1 0.7393 6.5732 1.6188 36 1 2.3792 6.4697 0.9346 37 1 0.9606 6.2431 -0.1163 38 1 -0.1942 2.9732 2.8932 39 1 -2.4357 4.6734 2.0138 40 1 -2.3683 2.9065 1.8089 41 1 -4.5141 3.5483 3.3081 42 1 -7.1463 3.0274 6.9372 43 1 -0.4222 2.5949 -0.5263 44 1 -0.2151 1.8135 1.0667 45 1 1.7040 -3.0484 -0.9974 46 1 0.9548 -2.8598 0.6468 47 1 3.1472 -2.8414 1.7431 48 1 3.6776 -3.7620 0.2695 49 1 4.2628 -0.9532 0.6465 50 1 4.0505 -1.6970 -0.9981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214581878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:10 Heat of formation + Delta-G solvation = -12.356127 kcal Electronic energy + Delta-G solvation = -29275.255294 eV Core-core repulsion = 25304.098852 eV Total energy + Delta-G solvation = -3971.156441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63657 -39.14701 -38.41836 -37.65848 -34.72198 -34.06969 -33.75151 -32.16545 -31.68600 -29.07241 -27.11804 -26.82867 -26.28302 -25.68645 -24.15220 -23.11621 -21.89148 -20.56476 -20.26816 -19.36951 -18.34498 -18.05836 -16.66632 -16.51550 -16.15165 -15.91233 -15.60373 -15.31036 -14.93036 -14.82172 -14.40203 -14.22194 -13.91873 -13.75543 -13.43367 -13.24018 -13.10337 -12.86968 -12.74951 -12.64018 -12.33759 -12.30788 -12.23579 -12.09965 -12.00978 -11.83254 -11.74380 -11.24918 -11.20461 -11.06116 -11.03059 -10.81918 -10.74921 -10.62574 -10.00462 -9.84287 -9.60633 -9.22376 -8.87567 -8.59047 -8.22535 -8.14863 -6.33896 -3.85636 1.14185 2.74288 2.99488 3.03315 3.07503 3.12434 3.69705 3.94512 4.00986 4.07494 4.18131 4.33174 4.38886 4.45441 4.68167 4.79239 4.82843 4.88007 4.94535 5.05348 5.12359 5.18322 5.23513 5.28676 5.35414 5.38358 5.39571 5.41381 5.47840 5.53801 5.55111 5.59060 5.61458 5.63170 5.75323 5.76662 5.84533 5.87205 5.91341 5.96037 6.07559 6.12894 6.24631 6.44261 7.03643 7.34397 7.47904 7.54985 8.02959 8.11367 8.56388 8.92027 9.39134 9.78981 10.79215 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002803 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.991217 B = 9985.456151 C =11652.724797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.165 4.165 3 C 0.578 3.422 4 O -0.543 6.543 5 N -0.615 5.615 6 C 0.108 3.892 7 C -0.095 4.095 8 H 0.092 0.908 9 C -0.137 4.137 10 C 0.077 3.923 11 H 0.095 0.905 12 N -0.655 5.655 13 C 0.045 3.955 14 C 0.449 3.551 15 O -0.564 6.564 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.269 1.269 25 C 0.060 3.940 26 C -0.068 4.068 27 C -0.107 4.107 28 C -0.141 4.141 29 C -0.100 4.100 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.353 0.647 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.138 -5.157 -20.328 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.168 4.168 3 C 0.370 3.630 4 O -0.421 6.421 5 N -0.349 5.349 6 C -0.015 4.015 7 C -0.115 4.115 8 H 0.110 0.890 9 C -0.194 4.194 10 C -0.035 4.035 11 H 0.114 0.886 12 N -0.287 5.287 13 C -0.087 4.087 14 C 0.234 3.766 15 O -0.446 6.446 16 N -0.229 5.229 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.065 4.065 26 C -0.070 4.070 27 C -0.143 4.143 28 C -0.179 4.179 29 C -0.137 4.137 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.174 0.826 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.178 -4.660 -19.442 24.510 hybrid contribution -1.536 -0.745 -1.360 2.182 sum 12.643 -5.405 -20.801 24.935 Atomic orbital electron populations 1.21163 0.90681 1.03326 1.02474 1.20391 0.95910 0.91030 1.09487 1.17915 0.86416 0.82561 0.76112 1.90767 1.13595 1.86947 1.50826 1.48516 1.09600 1.05628 1.71110 1.22534 0.99599 0.80733 0.98633 1.22232 0.94486 0.95362 0.99380 0.88989 1.21677 1.02091 0.93995 1.01675 1.22737 0.96669 0.94257 0.89853 0.88645 1.60171 1.05068 1.47386 1.16051 1.21785 0.88883 1.01466 0.96596 1.19688 0.82822 0.84150 0.89917 1.90581 1.55772 1.53827 1.44374 1.42204 1.05581 1.66169 1.08980 1.19429 0.92594 1.47040 0.84333 0.86293 1.25045 0.96856 0.97611 0.96653 1.69625 1.14628 1.48655 1.19172 0.86672 0.81720 0.78807 0.82178 1.19661 1.20172 1.19447 1.23582 0.82165 0.99939 1.00859 1.23456 0.97932 0.93621 0.92007 1.22345 0.98651 0.91512 1.01827 1.22836 0.96321 0.98036 1.00687 1.22322 0.93711 0.95885 1.01792 0.90823 0.90540 0.91486 0.89694 0.91042 0.91302 0.92508 0.92785 0.82605 0.89269 0.93681 0.79704 0.91589 0.91046 0.89411 0.88274 0.90165 0.89697 0.90585 0.89700 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.07 36.01 0.29 -0.79 16 2 C -0.17 -1.87 5.98 -102.85 -0.61 -2.49 16 3 C 0.58 7.73 7.81 -12.67 -0.10 7.64 16 4 O -0.54 -8.74 15.41 5.26 0.08 -8.66 16 5 N -0.62 -7.01 3.29 -171.37 -0.56 -7.57 16 6 C 0.11 1.09 6.54 -2.31 -0.02 1.08 16 7 C -0.09 -0.96 3.35 -88.93 -0.30 -1.26 16 8 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 9 C -0.14 -1.18 9.17 37.16 0.34 -0.84 16 10 C 0.08 0.80 2.88 -66.34 -0.19 0.61 16 11 H 0.10 0.87 7.57 -51.93 -0.39 0.48 16 12 N -0.65 -9.23 5.85 -106.53 -0.62 -9.85 16 13 C 0.05 0.68 6.00 -4.97 -0.03 0.65 16 14 C 0.45 9.73 7.82 -10.99 -0.09 9.64 16 15 O -0.56 -14.76 15.78 5.55 0.09 -14.67 16 16 N -0.59 -13.55 5.09 -10.97 -0.06 -13.60 16 17 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 18 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.44 13.96 55.50 0.77 -24.66 16 21 Si 0.88 18.86 27.73 -169.99 -4.71 14.15 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 25 C 0.06 0.58 4.64 -2.98 -0.01 0.56 16 26 C -0.07 -0.71 6.56 -100.24 -0.66 -1.37 16 27 C -0.11 -0.82 7.69 -27.01 -0.21 -1.02 16 28 C -0.14 -1.08 8.10 -25.92 -0.21 -1.29 16 29 C -0.10 -0.98 7.03 -26.85 -0.19 -1.17 16 30 H 0.07 0.68 6.99 -51.92 -0.36 0.32 16 31 H 0.08 0.62 5.15 -51.93 -0.27 0.36 16 32 H 0.07 0.52 7.77 -51.93 -0.40 0.12 16 33 H 0.08 0.95 7.81 -51.93 -0.41 0.54 16 34 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.35 5.42 7.93 -39.29 -0.31 5.11 16 39 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 0.57 7.09 -51.93 -0.37 0.20 16 44 H 0.09 0.89 4.76 -51.93 -0.25 0.64 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 50 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -33.98 396.68 -9.27 -43.25 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -8.00 Total: 13.31 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.23 Total: 2.33 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.47 Total: -55.69 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.98 -9.27 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214581878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.894 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds