Wall clock time and date at job start Tue Mar 31 2020 18:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47099 * 120.00049 * 2 1 4 4 O 1.21622 * 119.99804 * 186.79935 * 3 2 1 5 5 N 1.34775 * 120.00282 * 6.79436 * 3 2 1 6 6 C 1.48113 * 127.03403 * 185.13386 * 5 3 2 7 7 C 1.54601 * 103.42585 * 219.28909 * 6 5 3 8 8 H 1.09001 * 110.57247 * 81.16676 * 7 6 5 9 9 C 1.52995 * 110.98886 * 204.37751 * 7 6 5 10 10 C 1.54616 * 102.90940 * 322.87206 * 7 6 5 11 11 H 1.09000 * 110.32596 * 262.80734 * 10 7 6 12 12 N 1.46896 * 110.32786 * 140.58918 * 10 7 6 13 13 C 1.46909 * 111.00102 * 157.92380 * 12 10 7 14 14 C 1.50699 * 109.47129 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99965 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99975 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99974 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99903 * 359.97438 * 17 16 14 19 19 C 1.38942 * 119.99848 * 180.02562 * 17 16 14 20 20 N 1.31418 * 120.00010 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00325 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46950 * 89.99983 * 21 19 17 23 23 H 1.48504 * 109.47632 * 210.00217 * 21 19 17 24 24 H 1.48507 * 109.47161 * 330.00350 * 21 19 17 25 25 C 1.47480 * 127.03133 * 5.45558 * 5 3 2 26 26 C 1.32997 * 119.99863 * 179.97438 * 2 1 3 27 27 C 1.51584 * 135.78018 * 0.02562 * 26 2 1 28 28 C 1.53847 * 86.75293 * 205.14765 * 27 26 2 29 29 C 1.51877 * 135.78898 * 179.97438 * 26 2 1 30 30 H 1.09007 * 109.46828 * 274.41222 * 1 2 3 31 31 H 1.08998 * 109.47221 * 34.40725 * 1 2 3 32 32 H 1.08998 * 109.47296 * 154.40895 * 1 2 3 33 33 H 1.09001 * 110.66652 * 337.77263 * 6 5 3 34 34 H 1.08998 * 110.65921 * 100.89162 * 6 5 3 35 35 H 1.09008 * 109.46955 * 173.65408 * 9 7 6 36 36 H 1.09001 * 109.47151 * 293.64740 * 9 7 6 37 37 H 1.08997 * 109.47301 * 53.65077 * 9 7 6 38 38 H 1.00903 * 111.00225 * 281.87822 * 12 10 7 39 39 H 1.09000 * 109.46913 * 299.99757 * 13 12 10 40 40 H 1.09000 * 109.47027 * 60.00102 * 13 12 10 41 41 H 0.96996 * 119.99821 * 0.02562 * 16 14 13 42 42 H 0.97000 * 119.99856 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.91816 * 273.87341 * 25 5 3 44 44 H 1.09004 * 109.91776 * 35.15678 * 25 5 3 45 45 H 1.08991 * 113.66600 * 90.68060 * 27 26 2 46 46 H 1.09000 * 113.74692 * 319.61943 * 27 26 2 47 47 H 1.08993 * 113.65901 * 89.68725 * 28 27 26 48 48 H 1.09001 * 113.65420 * 220.64031 * 28 27 26 49 49 H 1.09000 * 113.74995 * 40.42233 * 29 26 2 50 50 H 1.08996 * 113.66333 * 269.26956 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4523 1.2776 -0.1247 5 7 1.5758 2.4370 0.1381 6 6 2.1400 3.8040 0.0548 7 6 1.3917 4.5697 1.1700 8 1 1.8460 4.3726 2.1411 9 6 1.3658 6.0719 0.8810 10 6 -0.0336 3.9743 1.1015 11 1 -0.6853 4.6190 0.5118 12 7 -0.5780 3.7966 2.4542 13 6 -2.0459 3.7436 2.4281 14 6 -2.5670 3.5617 3.8304 15 8 -1.7918 3.4835 4.7600 16 7 -3.8943 3.4861 4.0516 17 6 -4.3683 3.3201 5.3273 18 1 -3.6780 3.2495 6.1550 19 6 -5.7366 3.2415 5.5553 20 7 -6.1910 3.0819 6.7780 21 14 -6.9305 3.3628 4.1237 22 1 -7.1940 2.0052 3.5826 23 1 -8.2048 3.9652 4.5914 24 1 -6.3418 4.2143 3.0589 25 6 0.1364 2.6089 0.4096 26 6 2.1720 -1.1518 0.0005 27 6 1.7996 -2.6212 0.0007 28 6 3.1685 -2.8781 0.6540 29 6 3.6334 -1.5651 0.0002 30 1 -0.3633 0.0791 1.0247 31 1 -0.3633 0.8478 -0.5807 32 1 -0.3634 -0.9268 -0.4439 33 1 3.2120 3.7903 0.2514 34 1 1.9321 4.2471 -0.9192 35 1 0.7393 6.5732 1.6188 36 1 2.3792 6.4697 0.9346 37 1 0.9606 6.2431 -0.1163 38 1 -0.1942 2.9732 2.8932 39 1 -2.4357 4.6734 2.0138 40 1 -2.3683 2.9065 1.8089 41 1 -4.5141 3.5483 3.3081 42 1 -7.1463 3.0274 6.9372 43 1 -0.4222 2.5949 -0.5263 44 1 -0.2151 1.8135 1.0667 45 1 1.7040 -3.0484 -0.9974 46 1 0.9548 -2.8598 0.6468 47 1 3.1472 -2.8414 1.7431 48 1 3.6776 -3.7620 0.2695 49 1 4.2628 -0.9532 0.6465 50 1 4.0505 -1.6970 -0.9981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214581878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:09 Heat of formation + Delta-G solvation = -37.218720 kcal Electronic energy + Delta-G solvation = -29276.333417 eV Core-core repulsion = 25304.098852 eV Total energy + Delta-G solvation = -3972.234564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52631 -40.32729 -39.70077 -38.65663 -36.16845 -35.49806 -34.76944 -33.71796 -32.94852 -30.12096 -28.14721 -27.61159 -27.36516 -26.45553 -25.61936 -24.06596 -22.69848 -21.51957 -21.18146 -21.03138 -20.16356 -18.86563 -17.88347 -17.46336 -17.29640 -16.87172 -16.74959 -16.40337 -16.29828 -15.91062 -15.65785 -15.22557 -15.00787 -14.78133 -14.65595 -14.43849 -14.14082 -14.08261 -13.92182 -13.58050 -13.39858 -13.34766 -13.17007 -12.96204 -12.88276 -12.86680 -12.74564 -12.47749 -12.38918 -11.97758 -11.93128 -11.87853 -11.80883 -11.64553 -11.48617 -11.46254 -10.76470 -10.41182 -10.22635 -10.09712 -9.68743 -9.17194 -8.38968 -6.00215 0.30512 1.32819 1.38539 1.47748 1.88934 1.99808 2.15689 2.25945 2.72904 3.17881 3.21030 3.36102 3.48230 3.57891 3.62747 3.78192 3.92975 4.06543 4.14758 4.20341 4.21521 4.32431 4.38233 4.46260 4.51591 4.59642 4.62277 4.67633 4.70101 4.72409 4.72729 4.74567 4.83691 4.87663 4.96457 4.99271 5.02559 5.11234 5.13802 5.31463 5.31950 5.35606 5.47039 5.55941 5.68719 5.94126 6.10291 6.28859 6.48845 6.62393 6.91146 7.07580 7.42928 8.00535 8.78902 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002803 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.991217 B = 9985.456151 C =11652.724797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.185 4.185 3 C 0.566 3.434 4 O -0.585 6.585 5 N -0.616 5.616 6 C 0.108 3.892 7 C -0.091 4.091 8 H 0.062 0.938 9 C -0.131 4.131 10 C 0.082 3.918 11 H 0.124 0.876 12 N -0.674 5.674 13 C 0.060 3.940 14 C 0.447 3.553 15 O -0.618 6.618 16 N -0.590 5.590 17 C -0.328 4.328 18 H 0.052 0.948 19 C -0.017 4.017 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.226 1.226 25 C 0.061 3.939 26 C -0.080 4.080 27 C -0.095 4.095 28 C -0.134 4.134 29 C -0.110 4.110 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.341 0.659 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.391 0.609 42 H 0.278 0.722 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.056 0.944 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.110 -5.257 -24.848 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.188 4.188 3 C 0.359 3.641 4 O -0.467 6.467 5 N -0.348 5.348 6 C -0.014 4.014 7 C -0.111 4.111 8 H 0.080 0.920 9 C -0.189 4.189 10 C -0.029 4.029 11 H 0.142 0.858 12 N -0.306 5.306 13 C -0.072 4.072 14 C 0.235 3.765 15 O -0.503 6.503 16 N -0.232 5.232 17 C -0.457 4.457 18 H 0.070 0.930 19 C -0.216 4.216 20 N -0.578 5.578 21 Si 0.786 3.214 22 H -0.180 1.180 23 H -0.204 1.204 24 H -0.150 1.150 25 C -0.063 4.063 26 C -0.082 4.082 27 C -0.131 4.131 28 C -0.171 4.171 29 C -0.147 4.147 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.227 0.773 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.115 0.885 49 H 0.075 0.925 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.146 -4.731 -23.991 27.303 hybrid contribution -0.710 -0.701 0.172 1.013 sum 11.435 -5.432 -23.819 26.975 Atomic orbital electron populations 1.21152 0.88788 1.04599 1.02439 1.20571 0.97237 0.90273 1.10715 1.18409 0.86210 0.83778 0.75732 1.90736 1.15336 1.87616 1.53027 1.48609 1.10563 1.05542 1.70099 1.22600 0.98602 0.80430 0.99745 1.22155 0.94444 0.96591 0.97907 0.91992 1.21637 1.02334 0.92366 1.02522 1.22826 0.96708 0.95133 0.88230 0.85831 1.60151 1.04768 1.47125 1.18512 1.21740 0.89199 1.04569 0.91644 1.21084 0.81896 0.81068 0.92422 1.90564 1.57107 1.55345 1.47234 1.42012 1.06629 1.66893 1.07643 1.18987 0.92397 1.49220 0.85126 0.92994 1.26162 0.98743 0.96077 1.00587 1.69820 1.15506 1.49864 1.22632 0.85347 0.77658 0.80197 0.78191 1.17998 1.20406 1.14952 1.23693 0.81210 0.99246 1.02177 1.23930 0.98423 0.95067 0.90734 1.22397 0.98617 0.89056 1.03047 1.22811 0.96510 0.97522 1.00290 1.22401 0.93391 0.96937 1.01922 0.91350 0.89418 0.90071 0.91557 0.88557 0.92522 0.92171 0.90465 0.83934 0.86148 0.89641 0.77322 0.91216 0.87907 0.89759 0.86152 0.89402 0.90319 0.88473 0.92481 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 8.07 71.24 0.57 -1.19 16 2 C -0.19 -4.05 5.98 -18.70 -0.11 -4.16 16 3 C 0.57 15.20 7.81 86.57 0.68 15.87 16 4 O -0.58 -19.71 15.41 -4.10 -0.06 -19.77 16 5 N -0.62 -13.31 3.29 -814.34 -2.68 -15.99 16 6 C 0.11 2.07 6.54 86.61 0.57 2.64 16 7 C -0.09 -1.73 3.35 -9.70 -0.03 -1.76 16 8 H 0.06 1.55 8.06 -2.39 -0.02 1.54 16 9 C -0.13 -1.98 9.17 71.98 0.66 -1.32 16 10 C 0.08 1.44 2.88 45.81 0.13 1.57 16 11 H 0.12 1.57 7.57 -2.39 -0.02 1.55 16 12 N -0.67 -17.74 5.85 -490.96 -2.87 -20.61 16 13 C 0.06 1.58 6.00 85.56 0.51 2.10 16 14 C 0.45 19.09 7.82 87.66 0.69 19.77 16 15 O -0.62 -33.57 15.78 -3.07 -0.05 -33.62 16 16 N -0.59 -26.49 5.09 -306.99 -1.56 -28.06 16 17 C -0.33 -18.85 10.16 84.04 0.85 -17.99 16 18 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 19 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 20 N -0.94 -56.08 13.96 21.66 0.30 -55.78 16 21 Si 0.97 37.30 27.73 68.60 1.90 39.20 16 22 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 23 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.23 -7.13 6.52 99.48 0.65 -6.48 16 25 C 0.06 0.98 4.64 86.53 0.40 1.39 16 26 C -0.08 -1.61 6.56 -17.01 -0.11 -1.72 16 27 C -0.09 -1.24 7.69 30.42 0.23 -1.01 16 28 C -0.13 -1.89 8.10 31.12 0.25 -1.64 16 29 C -0.11 -2.17 7.03 30.52 0.21 -1.96 16 30 H 0.07 1.13 6.99 -2.38 -0.02 1.12 16 31 H 0.09 1.12 5.15 -2.39 -0.01 1.10 16 32 H 0.08 1.02 7.77 -2.39 -0.02 1.00 16 33 H 0.07 1.52 7.81 -2.39 -0.02 1.50 16 34 H 0.10 1.39 8.02 -2.39 -0.02 1.37 16 35 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.83 8.11 -2.39 -0.02 0.81 16 38 H 0.34 10.38 7.93 -89.69 -0.71 9.67 16 39 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 40 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 41 H 0.39 14.14 5.76 -92.71 -0.53 13.60 16 42 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.10 1.10 7.09 -2.39 -0.02 1.09 16 44 H 0.08 1.48 4.76 -2.38 -0.01 1.47 16 45 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.06 1.43 7.63 -2.39 -0.02 1.41 16 50 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -83.01 396.68 0.62 -82.40 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.34 Total: 42.11 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.98 Total: 10.10 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -6.81 Total: -120.43 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -0.11 Total: -53.38 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 1.90 Total: 39.20 kcal Total: -83.01 0.62 -82.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214581878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.177 kcal (2) G-P(sol) polarization free energy of solvation -83.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds