Wall clock time and date at job start Tue Mar 31 2020 18:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.37218 * 2 1 4 4 C 1.53999 * 110.32828 * 237.80852 * 2 1 3 5 5 N 1.47489 * 107.08299 * 242.41384 * 4 2 1 6 6 C 1.34777 * 127.02977 * 154.51592 * 5 4 2 7 7 O 1.21286 * 119.99520 * 174.96999 * 6 5 4 8 8 C 1.50696 * 120.00390 * 354.97464 * 6 5 4 9 9 C 1.52995 * 110.34542 * 61.57399 * 8 6 5 10 10 C 1.51103 * 110.38700 * 183.97907 * 8 6 5 11 11 C 1.30535 * 111.10229 * 135.24841 * 10 8 6 12 12 C 1.51101 * 111.10371 * 359.97438 * 11 10 8 13 13 C 1.54632 * 104.72703 * 343.56874 * 12 11 10 14 14 C 1.48118 * 105.93305 * 334.54911 * 5 4 2 15 15 C 1.54621 * 110.32771 * 122.18549 * 2 1 3 16 16 H 1.08998 * 110.73883 * 22.40418 * 15 2 1 17 17 N 1.46902 * 110.73916 * 259.07789 * 15 2 1 18 18 C 1.46898 * 110.99943 * 154.99805 * 17 15 2 19 19 C 1.50696 * 109.47255 * 180.02562 * 18 17 15 20 20 O 1.21289 * 120.00082 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00018 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99827 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00395 * 359.97438 * 22 21 19 24 24 C 1.38958 * 119.99887 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99829 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99949 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46890 * 89.99925 * 26 24 22 28 28 H 1.48496 * 109.46994 * 210.00215 * 26 24 22 29 29 H 1.48506 * 109.46940 * 329.99883 * 26 24 22 30 30 H 1.09000 * 109.47084 * 180.74288 * 1 2 3 31 31 H 1.08999 * 109.47130 * 300.74095 * 1 2 3 32 32 H 1.08997 * 109.47189 * 60.73975 * 1 2 3 33 33 H 1.09001 * 109.91580 * 1.77617 * 4 2 1 34 34 H 1.09003 * 109.91635 * 123.05069 * 4 2 1 35 35 H 1.09004 * 109.47580 * 53.55826 * 9 8 6 36 36 H 1.09004 * 109.47670 * 173.55644 * 9 8 6 37 37 H 1.09006 * 109.47298 * 293.55688 * 9 8 6 38 38 H 1.07994 * 124.45164 * 315.22868 * 10 8 6 39 39 H 1.07998 * 124.44372 * 179.97438 * 11 10 8 40 40 H 1.08988 * 110.38914 * 224.74958 * 12 11 10 41 41 H 1.09007 * 110.38062 * 102.37667 * 12 11 10 42 42 H 1.08997 * 111.03606 * 266.59998 * 13 12 11 43 43 H 1.09000 * 111.07264 * 142.67478 * 13 12 11 44 44 H 1.08996 * 110.66051 * 280.85478 * 14 5 4 45 45 H 1.09003 * 110.79905 * 157.80007 * 14 5 4 46 46 H 1.00903 * 110.99768 * 31.04509 * 17 15 2 47 47 H 1.09003 * 109.47418 * 300.00455 * 18 17 15 48 48 H 1.09000 * 109.46871 * 60.00038 * 18 17 15 49 49 H 0.97003 * 120.00013 * 359.97438 * 21 19 18 50 50 H 0.96998 * 119.99945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0650 -0.7693 -1.2221 5 7 2.8277 -1.9224 -0.7083 6 6 3.0613 -3.0886 -1.3422 7 8 3.7846 -3.9199 -0.8355 8 6 2.4240 -3.3595 -2.6806 9 6 2.8918 -2.3297 -3.7109 10 6 2.7516 -4.7593 -3.1459 11 6 1.6917 -5.3581 -3.6171 12 6 0.4805 -4.4577 -3.5440 13 6 0.8826 -3.3373 -2.5571 14 6 3.2836 -1.5369 0.6472 15 6 2.0671 -0.7723 1.2271 16 1 1.3175 -1.4683 1.6035 17 7 2.4919 0.1577 2.2819 18 6 2.4360 -0.4832 3.6026 19 6 2.8772 0.4992 4.6567 20 8 3.2053 1.6228 4.3392 21 7 2.9070 0.1292 5.9524 22 6 3.3078 1.0231 6.9115 23 1 3.6001 2.0236 6.6288 24 6 3.3381 0.6418 8.2474 25 7 2.9821 -0.5755 8.5914 26 14 3.8850 1.8596 9.5541 27 1 2.7063 2.6125 10.0531 28 1 4.5172 1.1266 10.6802 29 1 4.8660 2.8076 8.9676 30 1 -0.3633 -1.0276 0.0133 31 1 -0.3633 0.5253 0.8833 32 1 -0.3633 0.5023 -0.8965 33 1 1.2334 -1.1175 -1.8348 34 1 2.7181 -0.1244 -1.8101 35 1 3.9814 -2.3063 -3.7323 36 1 2.5150 -2.6043 -4.6962 37 1 2.5125 -1.3448 -3.4383 38 1 3.7337 -5.2057 -3.0956 39 1 1.6819 -6.3649 -4.0079 40 1 -0.3796 -5.0084 -3.1634 41 1 0.2597 -4.0380 -4.5255 42 1 0.5676 -3.5785 -1.5419 43 1 0.4790 -2.3747 -2.8713 44 1 4.1553 -0.8851 0.5889 45 1 3.5045 -2.4198 1.2470 46 1 1.9377 1.0007 2.2654 47 1 1.4144 -0.8024 3.8087 48 1 3.0968 -1.3500 3.6140 49 1 2.6442 -0.7694 6.2064 50 1 3.0029 -0.8415 9.5240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215331879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:39 Heat of formation + Delta-G solvation = -47.316054 kcal Electronic energy + Delta-G solvation = -29328.043029 eV Core-core repulsion = 25355.370611 eV Total energy + Delta-G solvation = -3972.672418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03682 -39.13253 -38.12934 -37.46496 -34.79477 -33.81944 -32.58951 -31.71213 -31.21210 -29.42625 -28.71358 -26.88584 -26.37587 -25.63803 -24.21308 -22.64166 -21.17068 -20.58567 -19.96824 -19.20744 -18.54496 -17.88053 -17.23928 -16.59849 -16.09715 -15.74236 -15.55200 -15.25032 -14.83559 -14.52325 -14.25373 -14.17085 -13.86577 -13.64362 -13.54428 -13.35045 -13.22563 -13.08497 -12.82499 -12.49975 -12.26835 -12.25776 -12.16117 -11.95403 -11.85533 -11.61415 -11.50390 -11.49045 -11.29597 -11.10638 -11.07559 -11.00361 -10.69561 -10.39364 -10.21829 -9.85439 -9.51284 -9.28311 -8.84195 -8.47745 -8.13845 -7.96672 -6.41735 -3.82665 1.90725 2.49553 2.79803 3.17815 3.26641 3.32659 3.89704 4.00826 4.04606 4.08318 4.23812 4.28024 4.43427 4.51979 4.64825 4.70442 4.83872 4.90956 5.04901 5.11057 5.17110 5.20421 5.21862 5.24318 5.27581 5.30541 5.32245 5.41574 5.47579 5.54144 5.58690 5.65608 5.72845 5.73517 5.79073 5.80000 5.84455 5.90854 5.96006 5.99498 6.13664 6.20163 6.28887 6.52376 7.16269 7.39952 7.55140 7.58815 8.02990 8.05802 8.60627 9.17498 9.53863 10.04906 10.75952 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.002100 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.526207 B =13329.030887 C =13753.187927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.544 3.456 7 O -0.536 6.536 8 C -0.056 4.056 9 C -0.138 4.138 10 C -0.129 4.129 11 C -0.168 4.168 12 C -0.099 4.099 13 C -0.114 4.114 14 C 0.114 3.886 15 C 0.077 3.923 16 H 0.059 0.941 17 N -0.656 5.656 18 C 0.049 3.951 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.354 0.646 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 -6.283 -26.139 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 H 0.116 0.884 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.332 3.668 7 O -0.412 6.412 8 C -0.059 4.059 9 C -0.196 4.196 10 C -0.148 4.148 11 C -0.186 4.186 12 C -0.136 4.136 13 C -0.151 4.151 14 C -0.009 4.009 15 C -0.034 4.034 16 H 0.077 0.923 17 N -0.289 5.289 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.175 0.825 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.661 -6.264 -26.005 27.566 hybrid contribution -0.775 -0.105 1.155 1.395 sum -7.436 -6.368 -24.850 26.709 Atomic orbital electron populations 1.21885 0.93966 1.02063 1.02408 1.22317 0.96288 1.00577 0.93910 0.88383 1.22400 0.95781 0.87357 0.96548 1.48690 1.53897 1.14655 1.18034 1.20111 0.80689 0.79791 0.86170 1.90712 1.37631 1.45307 1.67595 1.20641 0.96279 0.96107 0.92841 1.21878 1.02093 0.97566 0.98013 1.22902 0.99653 0.93478 0.98726 1.23257 0.94856 0.99298 1.01178 1.21358 0.97357 0.95429 0.99436 1.22628 0.92274 0.99647 1.00595 1.22520 0.97268 0.99368 0.81770 1.22668 0.95100 0.94208 0.91422 0.92269 1.60021 1.60216 1.06873 1.01824 1.21756 0.99988 0.97603 0.88982 1.19761 0.85228 0.88999 0.83377 1.90521 1.53552 1.21578 1.81155 1.41869 1.58402 1.14871 1.04808 1.19701 1.41098 0.96149 0.85951 0.87898 1.25277 0.97495 0.96912 0.98302 1.69612 1.48110 1.17690 1.18828 0.85851 0.78870 0.79800 0.79733 1.20431 1.20915 1.19385 0.92501 0.91993 0.92099 0.90142 0.91143 0.91857 0.91254 0.91301 0.85150 0.85389 0.90819 0.90393 0.90576 0.89887 0.89690 0.90085 0.82531 0.93716 0.89541 0.77441 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.89 37.16 0.33 -0.75 16 2 C -0.11 -0.99 3.08 -89.25 -0.28 -1.27 16 3 H 0.10 0.90 7.93 -51.93 -0.41 0.49 16 4 C 0.10 0.83 4.81 -2.98 -0.01 0.81 16 5 N -0.62 -6.95 3.28 -169.76 -0.56 -7.50 16 6 C 0.54 6.86 6.53 -10.99 -0.07 6.79 16 7 O -0.54 -9.02 16.33 5.55 0.09 -8.93 16 8 C -0.06 -0.50 0.54 -155.75 -0.08 -0.59 16 9 C -0.14 -0.97 8.21 37.16 0.30 -0.66 16 10 C -0.13 -1.23 8.71 -35.70 -0.31 -1.54 16 11 C -0.17 -1.29 10.78 -35.70 -0.38 -1.68 16 12 C -0.10 -0.62 6.81 -26.83 -0.18 -0.81 16 13 C -0.11 -0.81 5.01 -25.01 -0.13 -0.94 16 14 C 0.11 1.48 6.75 -2.13 -0.01 1.46 16 15 C 0.08 0.92 2.94 -65.83 -0.19 0.73 16 16 H 0.06 0.71 7.55 -51.93 -0.39 0.32 16 17 N -0.66 -9.99 5.98 -106.01 -0.63 -10.62 16 18 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 19 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 20 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 21 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.50 4.19 -51.93 -0.22 0.28 16 34 H 0.07 0.51 7.61 -51.93 -0.40 0.12 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 37 H 0.07 0.40 5.38 -51.93 -0.28 0.12 16 38 H 0.13 1.33 8.02 -52.49 -0.42 0.91 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.07 0.42 8.14 -51.94 -0.42 0.00 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.64 7.91 -51.93 -0.41 0.23 16 43 H 0.08 0.43 6.38 -51.93 -0.33 0.10 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 46 H 0.35 5.43 8.03 -39.29 -0.32 5.12 16 47 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 48 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 396.33 15.07 5.97 5.97 Total: -1.00 -33.33 396.33 -8.84 -42.17 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -8.06 Total: 12.05 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.38 Total: 4.62 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.52 Total: -56.42 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.18 Total: -24.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.33 -8.84 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215331879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.146 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds