Wall clock time and date at job start Tue Mar 31 2020 18:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.37218 * 2 1 4 4 C 1.53999 * 110.32828 * 237.80852 * 2 1 3 5 5 N 1.47489 * 107.08299 * 242.41384 * 4 2 1 6 6 C 1.34777 * 127.02977 * 154.51592 * 5 4 2 7 7 O 1.21286 * 119.99520 * 174.96999 * 6 5 4 8 8 C 1.50696 * 120.00390 * 354.97464 * 6 5 4 9 9 C 1.52995 * 110.34542 * 61.57399 * 8 6 5 10 10 C 1.51103 * 110.38700 * 183.97907 * 8 6 5 11 11 C 1.30535 * 111.10229 * 135.24841 * 10 8 6 12 12 C 1.51101 * 111.10371 * 359.97438 * 11 10 8 13 13 C 1.54632 * 104.72703 * 343.56874 * 12 11 10 14 14 C 1.48118 * 105.93305 * 334.54911 * 5 4 2 15 15 C 1.54621 * 110.32771 * 122.18549 * 2 1 3 16 16 H 1.08998 * 110.73883 * 22.40418 * 15 2 1 17 17 N 1.46902 * 110.73916 * 259.07789 * 15 2 1 18 18 C 1.46898 * 110.99943 * 154.99805 * 17 15 2 19 19 C 1.50696 * 109.47255 * 180.02562 * 18 17 15 20 20 O 1.21289 * 120.00082 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00018 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99827 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00395 * 359.97438 * 22 21 19 24 24 C 1.38958 * 119.99887 * 179.97438 * 22 21 19 25 25 N 1.31409 * 119.99829 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99949 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46890 * 89.99925 * 26 24 22 28 28 H 1.48496 * 109.46994 * 210.00215 * 26 24 22 29 29 H 1.48506 * 109.46940 * 329.99883 * 26 24 22 30 30 H 1.09000 * 109.47084 * 180.74288 * 1 2 3 31 31 H 1.08999 * 109.47130 * 300.74095 * 1 2 3 32 32 H 1.08997 * 109.47189 * 60.73975 * 1 2 3 33 33 H 1.09001 * 109.91580 * 1.77617 * 4 2 1 34 34 H 1.09003 * 109.91635 * 123.05069 * 4 2 1 35 35 H 1.09004 * 109.47580 * 53.55826 * 9 8 6 36 36 H 1.09004 * 109.47670 * 173.55644 * 9 8 6 37 37 H 1.09006 * 109.47298 * 293.55688 * 9 8 6 38 38 H 1.07994 * 124.45164 * 315.22868 * 10 8 6 39 39 H 1.07998 * 124.44372 * 179.97438 * 11 10 8 40 40 H 1.08988 * 110.38914 * 224.74958 * 12 11 10 41 41 H 1.09007 * 110.38062 * 102.37667 * 12 11 10 42 42 H 1.08997 * 111.03606 * 266.59998 * 13 12 11 43 43 H 1.09000 * 111.07264 * 142.67478 * 13 12 11 44 44 H 1.08996 * 110.66051 * 280.85478 * 14 5 4 45 45 H 1.09003 * 110.79905 * 157.80007 * 14 5 4 46 46 H 1.00903 * 110.99768 * 31.04509 * 17 15 2 47 47 H 1.09003 * 109.47418 * 300.00455 * 18 17 15 48 48 H 1.09000 * 109.46871 * 60.00038 * 18 17 15 49 49 H 0.97003 * 120.00013 * 359.97438 * 21 19 18 50 50 H 0.96998 * 119.99945 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0650 -0.7693 -1.2221 5 7 2.8277 -1.9224 -0.7083 6 6 3.0613 -3.0886 -1.3422 7 8 3.7846 -3.9199 -0.8355 8 6 2.4240 -3.3595 -2.6806 9 6 2.8918 -2.3297 -3.7109 10 6 2.7516 -4.7593 -3.1459 11 6 1.6917 -5.3581 -3.6171 12 6 0.4805 -4.4577 -3.5440 13 6 0.8826 -3.3373 -2.5571 14 6 3.2836 -1.5369 0.6472 15 6 2.0671 -0.7723 1.2271 16 1 1.3175 -1.4683 1.6035 17 7 2.4919 0.1577 2.2819 18 6 2.4360 -0.4832 3.6026 19 6 2.8772 0.4992 4.6567 20 8 3.2053 1.6228 4.3392 21 7 2.9070 0.1292 5.9524 22 6 3.3078 1.0231 6.9115 23 1 3.6001 2.0236 6.6288 24 6 3.3381 0.6418 8.2474 25 7 2.9821 -0.5755 8.5914 26 14 3.8850 1.8596 9.5541 27 1 2.7063 2.6125 10.0531 28 1 4.5172 1.1266 10.6802 29 1 4.8660 2.8076 8.9676 30 1 -0.3633 -1.0276 0.0133 31 1 -0.3633 0.5253 0.8833 32 1 -0.3633 0.5023 -0.8965 33 1 1.2334 -1.1175 -1.8348 34 1 2.7181 -0.1244 -1.8101 35 1 3.9814 -2.3063 -3.7323 36 1 2.5150 -2.6043 -4.6962 37 1 2.5125 -1.3448 -3.4383 38 1 3.7337 -5.2057 -3.0956 39 1 1.6819 -6.3649 -4.0079 40 1 -0.3796 -5.0084 -3.1634 41 1 0.2597 -4.0380 -4.5255 42 1 0.5676 -3.5785 -1.5419 43 1 0.4790 -2.3747 -2.8713 44 1 4.1553 -0.8851 0.5889 45 1 3.5045 -2.4198 1.2470 46 1 1.9377 1.0007 2.2654 47 1 1.4144 -0.8024 3.8087 48 1 3.0968 -1.3500 3.6140 49 1 2.6442 -0.7694 6.2064 50 1 3.0029 -0.8415 9.5240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215331879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:38 Heat of formation + Delta-G solvation = -70.820172 kcal Electronic energy + Delta-G solvation = -29329.062244 eV Core-core repulsion = 25355.370611 eV Total energy + Delta-G solvation = -3973.691633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.86407 -40.32171 -39.60894 -38.44168 -36.24921 -35.60037 -33.52854 -33.21959 -32.37813 -30.10838 -29.71901 -27.94527 -27.50653 -26.39197 -25.82540 -23.59199 -21.93703 -21.55087 -20.91528 -20.75262 -19.91053 -19.27237 -18.16075 -17.70500 -17.34700 -16.83561 -16.77301 -16.47125 -16.17421 -15.91598 -15.48339 -15.25430 -15.12830 -14.78753 -14.52648 -14.25311 -14.07258 -13.93837 -13.73150 -13.60363 -13.49764 -13.35594 -13.12637 -12.95244 -12.85116 -12.74610 -12.63492 -12.45919 -12.42526 -12.15105 -12.12833 -12.02857 -11.75399 -11.73590 -11.55850 -11.51643 -10.77822 -10.37076 -10.03511 -9.92902 -9.77516 -9.40624 -8.47885 -5.96912 1.25572 1.37285 1.41110 1.54180 1.55669 1.90642 2.02705 2.28318 2.88878 3.19213 3.27561 3.42107 3.47830 3.56187 3.63159 3.88302 3.95363 4.05180 4.21802 4.26012 4.28997 4.29181 4.38236 4.44642 4.49404 4.53330 4.58823 4.63575 4.74344 4.75549 4.78111 4.87131 4.88903 4.94283 4.96544 4.99961 5.09319 5.14201 5.20953 5.26426 5.31449 5.38925 5.40496 5.59047 5.86980 5.88693 6.06510 6.35473 6.52812 6.57690 7.07878 7.10693 7.53974 8.08471 8.69573 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.002100 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.526207 B =13329.030887 C =13753.187927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.098 0.902 4 C 0.102 3.898 5 N -0.615 5.615 6 C 0.535 3.465 7 O -0.592 6.592 8 C -0.050 4.050 9 C -0.135 4.135 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.097 4.097 13 C -0.111 4.111 14 C 0.112 3.888 15 C 0.083 3.917 16 H 0.063 0.937 17 N -0.666 5.666 18 C 0.064 3.936 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.269 1.269 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.140 0.860 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.354 0.646 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -5.738 -28.019 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.020 4.020 5 N -0.348 5.348 6 C 0.326 3.674 7 O -0.472 6.472 8 C -0.053 4.053 9 C -0.192 4.192 10 C -0.185 4.185 11 C -0.171 4.171 12 C -0.133 4.133 13 C -0.149 4.149 14 C -0.012 4.012 15 C -0.028 4.028 16 H 0.081 0.919 17 N -0.299 5.299 18 C -0.068 4.068 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.099 0.901 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.194 1.194 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.158 0.842 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.175 0.825 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.988 -5.715 -27.911 29.874 hybrid contribution -0.034 -0.321 1.691 1.722 sum -9.022 -6.036 -26.220 28.378 Atomic orbital electron populations 1.21876 0.92217 1.02545 1.03292 1.22301 0.97619 1.00087 0.92277 0.88338 1.22649 0.96603 0.86264 0.96521 1.48753 1.53589 1.15241 1.17186 1.20959 0.79980 0.79244 0.87252 1.90676 1.40184 1.47153 1.69201 1.20697 0.97455 0.96368 0.90785 1.21904 1.01255 0.97740 0.98312 1.22889 0.99590 0.94632 1.01359 1.23571 0.94854 0.99760 0.98911 1.21429 0.96638 0.94851 1.00416 1.22689 0.90351 1.01556 1.00291 1.22374 0.97622 0.98215 0.83022 1.22644 0.94522 0.94006 0.91633 0.91889 1.59946 1.61065 1.07545 1.01392 1.21579 1.01143 0.95864 0.88217 1.20761 0.83389 0.89409 0.83715 1.90487 1.54747 1.23601 1.81789 1.41953 1.59029 1.14727 1.05388 1.19681 1.43155 0.96042 0.87370 0.90120 1.26085 0.96958 0.98703 0.99721 1.69678 1.48136 1.18817 1.19608 0.84905 0.78579 0.77627 0.77097 1.19401 1.19694 1.19733 0.92140 0.92870 0.89577 0.87347 0.89636 0.93418 0.89336 0.89608 0.87332 0.84192 0.89810 0.87991 0.91990 0.87024 0.91047 0.92558 0.82488 0.91327 0.88829 0.77079 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.89 71.98 0.64 -0.98 16 2 C -0.10 -1.60 3.08 -9.91 -0.03 -1.63 16 3 H 0.10 1.58 7.93 -2.38 -0.02 1.56 16 4 C 0.10 1.36 4.81 86.53 0.42 1.78 16 5 N -0.61 -13.48 3.28 -809.39 -2.65 -16.13 16 6 C 0.54 13.68 6.53 87.66 0.57 14.25 16 7 O -0.59 -21.21 16.33 -3.05 -0.05 -21.26 16 8 C -0.05 -0.84 0.54 -52.99 -0.03 -0.87 16 9 C -0.14 -1.58 8.21 71.98 0.59 -0.99 16 10 C -0.17 -3.14 8.71 26.25 0.23 -2.91 16 11 C -0.15 -2.09 10.78 26.25 0.28 -1.81 16 12 C -0.10 -0.88 6.81 30.53 0.21 -0.67 16 13 C -0.11 -1.25 5.01 31.71 0.16 -1.09 16 14 C 0.11 2.97 6.75 86.73 0.59 3.55 16 15 C 0.08 1.90 2.94 46.13 0.14 2.03 16 16 H 0.06 1.44 7.55 -2.39 -0.02 1.42 16 17 N -0.67 -20.08 5.98 -489.31 -2.92 -23.00 16 18 C 0.06 2.23 6.03 85.56 0.52 2.75 16 19 C 0.44 20.98 7.82 87.66 0.69 21.67 16 20 O -0.62 -34.04 15.78 -3.06 -0.05 -34.09 16 21 N -0.57 -29.82 5.29 -306.98 -1.62 -31.45 16 22 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 25 N -0.92 -50.45 13.05 21.67 0.28 -50.16 16 26 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 30 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 0.87 4.19 -2.39 -0.01 0.86 16 34 H 0.09 0.96 7.61 -2.39 -0.02 0.94 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 0.72 8.13 -2.39 -0.02 0.70 16 37 H 0.09 0.68 5.38 -2.38 -0.01 0.66 16 38 H 0.11 2.44 8.02 -2.91 -0.02 2.42 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 42 H 0.06 0.89 7.91 -2.39 -0.02 0.88 16 43 H 0.11 0.59 6.38 -2.39 -0.02 0.58 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.75 7.90 -2.39 -0.02 1.73 16 46 H 0.35 10.68 8.03 -89.69 -0.72 9.96 16 47 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 48 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -75.91 396.33 0.76 -75.16 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: -0.49 Total: 39.13 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 6.24 Total: 16.50 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.92 Total: -120.75 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.10 Total: -55.35 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.91 0.76 -75.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215331879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.335 kcal (2) G-P(sol) polarization free energy of solvation -75.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds