Wall clock time and date at job start Tue Mar 31 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47117 * 120.00196 * 2 1 4 4 C 1.50697 * 120.00172 * 5.64535 * 3 2 1 5 5 C 1.32874 * 119.99888 * 185.37428 * 3 2 1 6 6 C 1.50700 * 120.00121 * 355.08723 * 5 3 2 7 7 C 1.50698 * 109.47071 * 125.67324 * 6 5 3 8 8 O 1.21281 * 120.00184 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00028 * 180.02562 * 7 6 5 10 10 C 1.47485 * 127.03199 * 0.02562 * 9 7 6 11 11 C 1.54004 * 107.08312 * 154.52264 * 10 9 7 12 12 H 1.08994 * 110.32993 * 120.30394 * 11 10 9 13 13 C 1.53005 * 110.32472 * 242.41746 * 11 10 9 14 14 C 1.54622 * 105.04237 * 1.30493 * 11 10 9 15 15 H 1.08997 * 110.73853 * 263.33419 * 14 11 10 16 16 N 1.46904 * 110.73611 * 140.18876 * 14 11 10 17 17 C 1.46896 * 110.99857 * 155.00223 * 16 14 11 18 18 C 1.50702 * 109.47184 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99405 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00156 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99762 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00139 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99780 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99996 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00108 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47165 * 89.99844 * 25 23 21 27 27 H 1.48501 * 109.47347 * 210.00138 * 25 23 21 28 28 H 1.48502 * 109.46959 * 330.00107 * 25 23 21 29 29 C 1.48113 * 127.03381 * 179.71243 * 9 7 6 30 30 H 1.07997 * 120.00173 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99336 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.99801 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47515 * 269.72777 * 4 3 2 34 34 H 1.09000 * 109.46999 * 29.72352 * 4 3 2 35 35 H 1.08998 * 109.47018 * 149.72952 * 4 3 2 36 36 H 1.08003 * 119.99963 * 175.09035 * 5 3 2 37 37 H 1.09001 * 109.47318 * 245.67560 * 6 5 3 38 38 H 1.09000 * 109.46743 * 5.67706 * 6 5 3 39 39 H 1.08994 * 109.91775 * 273.88417 * 10 9 7 40 40 H 1.09005 * 109.91239 * 34.97134 * 10 9 7 41 41 H 1.09000 * 109.47089 * 58.54260 * 13 11 10 42 42 H 1.09005 * 109.46842 * 178.54668 * 13 11 10 43 43 H 1.09001 * 109.46745 * 298.54466 * 13 11 10 44 44 H 1.00906 * 110.99462 * 278.95381 * 16 14 11 45 45 H 1.09004 * 109.47237 * 300.00041 * 17 16 14 46 46 H 1.09000 * 109.47202 * 59.99659 * 17 16 14 47 47 H 0.96998 * 120.00024 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00198 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.66312 * 337.76400 * 29 9 7 50 50 H 1.08998 * 110.66439 * 100.87911 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3164 2.5760 0.1284 5 6 3.3887 1.2765 -0.1078 6 6 4.1463 -0.0262 -0.1185 7 6 5.0184 -0.0900 -1.3458 8 8 5.0246 0.8318 -2.1340 9 7 5.7916 -1.1715 -1.5677 10 6 5.9038 -2.3723 -0.7188 11 6 6.3443 -3.5319 -1.6315 12 1 7.2938 -3.9434 -1.2895 13 6 5.2722 -4.6233 -1.6590 14 6 6.5039 -2.9005 -3.0339 15 1 5.6059 -3.0559 -3.6317 16 7 7.6834 -3.4462 -3.7188 17 6 7.5387 -3.3456 -5.1772 18 6 8.7650 -3.9134 -5.8441 19 8 9.6707 -4.3577 -5.1706 20 7 8.8559 -3.9265 -7.1887 21 6 9.9718 -4.4426 -7.7953 22 1 10.7779 -4.8389 -7.1957 23 6 10.0653 -4.4566 -9.1816 24 7 11.1351 -4.9508 -9.7630 25 14 8.6707 -3.7717 -10.2187 26 1 8.9016 -2.3257 -10.4658 27 1 8.6177 -4.4933 -11.5155 28 1 7.3842 -3.9516 -9.4991 29 6 6.6974 -1.3999 -2.7170 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8687 -0.9354 -0.0004 33 1 1.0527 2.9430 -0.8636 34 1 0.4085 2.4176 0.7103 35 1 1.9470 3.3092 0.6312 36 1 3.9223 2.2121 -0.1876 37 1 4.7691 -0.0917 0.7736 38 1 3.4405 -0.8568 -0.1308 39 1 6.6493 -2.2086 0.0593 40 1 4.9384 -2.5985 -0.2661 41 1 4.3324 -4.2005 -2.0141 42 1 5.5863 -5.4243 -2.3284 43 1 5.1344 -5.0225 -0.6542 44 1 8.5267 -2.9886 -3.4067 45 1 6.6595 -3.9064 -5.4946 46 1 7.4235 -2.2991 -5.4595 47 1 8.1318 -3.5709 -7.7272 48 1 11.2002 -4.9609 -10.7308 49 1 6.4011 -0.7866 -3.5681 50 1 7.7315 -1.1981 -2.4378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215341787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:52 Heat of formation + Delta-G solvation = -28.318621 kcal Electronic energy + Delta-G solvation = -28285.906595 eV Core-core repulsion = 24314.057968 eV Total energy + Delta-G solvation = -3971.848627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48739 -38.78513 -38.11045 -37.13267 -34.84518 -33.87031 -32.67372 -32.36275 -31.66959 -30.52439 -29.05594 -26.81486 -26.57565 -25.36741 -23.87762 -22.54689 -22.14578 -20.56692 -19.65753 -19.34827 -18.36327 -17.91546 -17.43333 -16.74710 -16.23557 -15.93179 -15.56518 -15.36339 -15.07889 -14.81258 -14.31840 -14.25045 -13.83967 -13.70983 -13.59339 -13.43772 -13.24849 -13.02667 -12.92852 -12.79714 -12.54473 -12.47690 -12.27410 -12.19136 -12.04311 -11.92407 -11.77971 -11.29050 -11.20760 -11.12912 -11.05040 -10.90714 -10.81913 -10.59866 -10.09031 -9.98425 -9.58430 -9.03659 -8.61581 -8.59778 -8.22505 -8.17045 -6.32075 -3.83628 0.96945 2.38362 2.52901 2.79126 3.02657 3.06951 3.15195 3.71844 3.94629 4.09726 4.20095 4.25554 4.34953 4.48079 4.57460 4.61869 4.70101 4.86413 4.91159 4.95962 5.04229 5.06221 5.14692 5.20538 5.22082 5.26241 5.30013 5.32723 5.39906 5.51356 5.53834 5.58827 5.64002 5.64558 5.71312 5.79045 5.86577 5.91767 5.98906 6.03269 6.06052 6.14855 6.33209 6.55343 7.01395 7.26873 7.45930 7.56717 7.90975 8.13027 8.58192 8.93627 9.41176 9.80650 10.80913 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.002022 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.521113 B =13843.810528 C =14542.446022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.128 4.128 3 C -0.107 4.107 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.114 4.114 7 C 0.533 3.467 8 O -0.538 6.538 9 N -0.620 5.620 10 C 0.102 3.898 11 C -0.096 4.096 12 H 0.098 0.902 13 C -0.139 4.139 14 C 0.080 3.920 15 H 0.091 0.909 16 N -0.652 5.652 17 C 0.046 3.954 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.073 3.927 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.354 0.646 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.083 0.917 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.370 9.692 22.158 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.145 4.145 3 C -0.107 4.107 4 C -0.172 4.172 5 C -0.139 4.139 6 C -0.153 4.153 7 C 0.323 3.677 8 O -0.414 6.414 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.116 4.116 12 H 0.116 0.884 13 C -0.197 4.197 14 C -0.032 4.032 15 H 0.109 0.891 16 N -0.284 5.284 17 C -0.087 4.087 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.052 4.052 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.134 0.866 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.174 0.826 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.891 9.265 22.023 31.738 hybrid contribution -0.798 1.334 -1.226 1.980 sum -21.689 10.599 20.797 31.863 Atomic orbital electron populations 1.24437 0.95705 1.02140 0.99539 1.21973 0.95396 0.96277 1.00874 1.20575 0.93839 0.94468 1.01857 1.20787 1.00101 0.94139 1.02217 1.22791 0.94007 0.97653 0.99451 1.20877 0.98807 0.98751 0.96879 1.20279 0.79314 0.80692 0.87465 1.90725 1.66331 1.36514 1.47876 1.48742 1.43307 1.18031 1.25452 1.22335 1.01693 0.84348 0.93766 1.22092 1.00834 0.94530 0.94120 0.88398 1.21798 0.97471 0.98431 1.01984 1.22749 0.95138 0.90184 0.95138 0.89112 1.60170 1.03857 1.60344 1.03980 1.21786 0.98881 0.99523 0.88521 1.19662 0.88901 0.85313 0.82602 1.90567 1.40745 1.50193 1.63191 1.42206 1.19024 1.56192 1.05463 1.19428 0.96431 1.36788 0.90757 0.86253 1.25041 0.97095 0.97517 0.96487 1.69619 1.27193 1.44594 1.10626 0.86677 0.81907 0.79865 0.80978 1.19630 1.20144 1.19468 1.23286 0.94033 0.98084 0.89750 0.88063 0.88046 0.86587 0.91347 0.91571 0.91537 0.86074 0.87777 0.87933 0.91191 0.90626 0.93007 0.91355 0.92547 0.82553 0.89338 0.93526 0.79668 0.91595 0.89828 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.07 28.88 0.41 -0.71 16 2 C -0.13 -0.91 9.33 -37.83 -0.35 -1.26 16 3 C -0.11 -0.85 5.98 -102.87 -0.61 -1.47 16 4 C -0.12 -0.75 9.39 36.00 0.34 -0.41 16 5 C -0.12 -1.04 8.43 -36.16 -0.30 -1.35 16 6 C -0.11 -0.87 5.05 -29.04 -0.15 -1.02 16 7 C 0.53 6.05 7.89 -10.98 -0.09 5.96 16 8 O -0.54 -8.38 16.24 5.56 0.09 -8.29 16 9 N -0.62 -6.24 3.29 -169.99 -0.56 -6.80 16 10 C 0.10 0.74 6.42 -2.98 -0.02 0.72 16 11 C -0.10 -0.84 3.34 -89.24 -0.30 -1.13 16 12 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 13 C -0.14 -1.10 8.89 37.16 0.33 -0.77 16 14 C 0.08 0.87 2.93 -66.02 -0.19 0.68 16 15 H 0.09 1.00 7.54 -51.93 -0.39 0.61 16 16 N -0.65 -9.26 5.95 -106.21 -0.63 -9.90 16 17 C 0.05 0.73 6.03 -4.98 -0.03 0.70 16 18 C 0.45 10.01 7.82 -10.98 -0.09 9.92 16 19 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 20 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 21 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 25 Si 0.88 19.44 27.74 -169.99 -4.71 14.72 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 C 0.07 0.82 6.65 -2.32 -0.02 0.80 16 30 H 0.10 0.50 8.06 -52.49 -0.42 0.07 16 31 H 0.10 0.55 6.31 -52.48 -0.33 0.22 16 32 H 0.12 0.70 5.77 -52.48 -0.30 0.40 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.35 6.66 -51.93 -0.35 0.00 16 35 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.63 5.01 -51.93 -0.26 0.37 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.41 7.08 -51.93 -0.37 0.04 16 41 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.35 5.22 7.91 -39.29 -0.31 4.91 16 45 H 0.09 1.27 8.08 -51.93 -0.42 0.86 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 49 H 0.08 1.06 7.85 -51.93 -0.41 0.66 16 50 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -34.71 407.30 -8.17 -42.88 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.97 Total: 12.02 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.32 Total: 2.94 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.47 Total: -55.64 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.18 Total: -23.06 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.71 -8.17 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215341787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.561 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds