Wall clock time and date at job start Tue Mar 31 2020 18:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32870 * 1 3 3 C 1.47117 * 120.00196 * 2 1 4 4 C 1.50697 * 120.00172 * 5.64535 * 3 2 1 5 5 C 1.32874 * 119.99888 * 185.37428 * 3 2 1 6 6 C 1.50700 * 120.00121 * 355.08723 * 5 3 2 7 7 C 1.50698 * 109.47071 * 125.67324 * 6 5 3 8 8 O 1.21281 * 120.00184 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00028 * 180.02562 * 7 6 5 10 10 C 1.47485 * 127.03199 * 0.02562 * 9 7 6 11 11 C 1.54004 * 107.08312 * 154.52264 * 10 9 7 12 12 H 1.08994 * 110.32993 * 120.30394 * 11 10 9 13 13 C 1.53005 * 110.32472 * 242.41746 * 11 10 9 14 14 C 1.54622 * 105.04237 * 1.30493 * 11 10 9 15 15 H 1.08997 * 110.73853 * 263.33419 * 14 11 10 16 16 N 1.46904 * 110.73611 * 140.18876 * 14 11 10 17 17 C 1.46896 * 110.99857 * 155.00223 * 16 14 11 18 18 C 1.50702 * 109.47184 * 179.97438 * 17 16 14 19 19 O 1.21294 * 119.99405 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00156 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99762 * 179.97438 * 20 18 17 22 22 H 1.07995 * 120.00139 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99780 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99996 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00108 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47165 * 89.99844 * 25 23 21 27 27 H 1.48501 * 109.47347 * 210.00138 * 25 23 21 28 28 H 1.48502 * 109.46959 * 330.00107 * 25 23 21 29 29 C 1.48113 * 127.03381 * 179.71243 * 9 7 6 30 30 H 1.07997 * 120.00173 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99336 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.99801 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47515 * 269.72777 * 4 3 2 34 34 H 1.09000 * 109.46999 * 29.72352 * 4 3 2 35 35 H 1.08998 * 109.47018 * 149.72952 * 4 3 2 36 36 H 1.08003 * 119.99963 * 175.09035 * 5 3 2 37 37 H 1.09001 * 109.47318 * 245.67560 * 6 5 3 38 38 H 1.09000 * 109.46743 * 5.67706 * 6 5 3 39 39 H 1.08994 * 109.91775 * 273.88417 * 10 9 7 40 40 H 1.09005 * 109.91239 * 34.97134 * 10 9 7 41 41 H 1.09000 * 109.47089 * 58.54260 * 13 11 10 42 42 H 1.09005 * 109.46842 * 178.54668 * 13 11 10 43 43 H 1.09001 * 109.46745 * 298.54466 * 13 11 10 44 44 H 1.00906 * 110.99462 * 278.95381 * 16 14 11 45 45 H 1.09004 * 109.47237 * 300.00041 * 17 16 14 46 46 H 1.09000 * 109.47202 * 59.99659 * 17 16 14 47 47 H 0.96998 * 120.00024 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00198 * 179.97438 * 24 23 21 49 49 H 1.09000 * 110.66312 * 337.76400 * 29 9 7 50 50 H 1.08998 * 110.66439 * 100.87911 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3164 2.5760 0.1284 5 6 3.3887 1.2765 -0.1078 6 6 4.1463 -0.0262 -0.1185 7 6 5.0184 -0.0900 -1.3458 8 8 5.0246 0.8318 -2.1340 9 7 5.7916 -1.1715 -1.5677 10 6 5.9038 -2.3723 -0.7188 11 6 6.3443 -3.5319 -1.6315 12 1 7.2938 -3.9434 -1.2895 13 6 5.2722 -4.6233 -1.6590 14 6 6.5039 -2.9005 -3.0339 15 1 5.6059 -3.0559 -3.6317 16 7 7.6834 -3.4462 -3.7188 17 6 7.5387 -3.3456 -5.1772 18 6 8.7650 -3.9134 -5.8441 19 8 9.6707 -4.3577 -5.1706 20 7 8.8559 -3.9265 -7.1887 21 6 9.9718 -4.4426 -7.7953 22 1 10.7779 -4.8389 -7.1957 23 6 10.0653 -4.4566 -9.1816 24 7 11.1351 -4.9508 -9.7630 25 14 8.6707 -3.7717 -10.2187 26 1 8.9016 -2.3257 -10.4658 27 1 8.6177 -4.4933 -11.5155 28 1 7.3842 -3.9516 -9.4991 29 6 6.6974 -1.3999 -2.7170 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9354 0.0004 32 1 1.8687 -0.9354 -0.0004 33 1 1.0527 2.9430 -0.8636 34 1 0.4085 2.4176 0.7103 35 1 1.9470 3.3092 0.6312 36 1 3.9223 2.2121 -0.1876 37 1 4.7691 -0.0917 0.7736 38 1 3.4405 -0.8568 -0.1308 39 1 6.6493 -2.2086 0.0593 40 1 4.9384 -2.5985 -0.2661 41 1 4.3324 -4.2005 -2.0141 42 1 5.5863 -5.4243 -2.3284 43 1 5.1344 -5.0225 -0.6542 44 1 8.5267 -2.9886 -3.4067 45 1 6.6595 -3.9064 -5.4946 46 1 7.4235 -2.2991 -5.4595 47 1 8.1318 -3.5709 -7.7272 48 1 11.2002 -4.9609 -10.7308 49 1 6.4011 -0.7866 -3.5681 50 1 7.7315 -1.1981 -2.4378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215341787.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:51 Heat of formation + Delta-G solvation = -53.455724 kcal Electronic energy + Delta-G solvation = -28286.996622 eV Core-core repulsion = 24314.057968 eV Total energy + Delta-G solvation = -3972.938654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32137 -40.31312 -39.22748 -37.75202 -36.24918 -35.58594 -33.77295 -33.45610 -32.92793 -31.12207 -30.03936 -28.01041 -27.35630 -26.32321 -25.32878 -23.41555 -22.69459 -21.52739 -21.16616 -20.43170 -20.16503 -18.46139 -18.26433 -17.79621 -17.33102 -17.15175 -16.67537 -16.45387 -16.26307 -15.83667 -15.67445 -15.09908 -15.02391 -14.65071 -14.60481 -14.42226 -14.32714 -14.07605 -13.93418 -13.89297 -13.47849 -13.41047 -13.31669 -13.03600 -12.91426 -12.88851 -12.85701 -12.44252 -12.42832 -12.03530 -11.98922 -11.89847 -11.66238 -11.56454 -11.52918 -11.32845 -10.95090 -10.44978 -10.26245 -9.86684 -9.32804 -9.13651 -8.42530 -6.03220 0.43853 1.29158 1.33967 1.42791 1.56904 1.83746 1.93709 2.18843 2.21378 2.69663 3.13821 3.27968 3.50936 3.64799 3.71954 3.86691 3.91010 3.99815 4.12488 4.14287 4.23838 4.27313 4.37069 4.40560 4.49148 4.53906 4.57368 4.67029 4.71763 4.75484 4.77362 4.78902 4.84055 4.92343 4.94745 5.03602 5.14656 5.19024 5.34725 5.46940 5.48648 5.52695 5.57842 5.81236 5.89363 6.01463 6.03285 6.29748 6.50428 6.57855 6.86517 7.09188 7.38109 7.93903 8.74922 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.002022 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.521113 B =13843.810528 C =14542.446022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.148 4.148 3 C -0.107 4.107 4 C -0.119 4.119 5 C -0.144 4.144 6 C -0.103 4.103 7 C 0.528 3.472 8 O -0.590 6.590 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.092 4.092 12 H 0.090 0.910 13 C -0.135 4.135 14 C 0.085 3.915 15 H 0.095 0.905 16 N -0.663 5.663 17 C 0.060 3.940 18 C 0.450 3.550 19 O -0.611 6.611 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.232 1.232 29 C 0.073 3.927 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.348 0.652 45 H 0.114 0.886 46 H 0.072 0.928 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.065 0.935 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.390 10.106 23.355 35.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.107 4.107 4 C -0.176 4.176 5 C -0.163 4.163 6 C -0.141 4.141 7 C 0.319 3.681 8 O -0.471 6.471 9 N -0.352 5.352 10 C -0.018 4.018 11 C -0.112 4.112 12 H 0.109 0.891 13 C -0.193 4.193 14 C -0.026 4.026 15 H 0.113 0.887 16 N -0.294 5.294 17 C -0.073 4.073 18 C 0.238 3.762 19 O -0.496 6.496 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.075 0.925 23 C -0.213 4.213 24 N -0.573 5.573 25 Si 0.783 3.217 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.155 1.155 29 C -0.052 4.052 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.168 0.832 45 H 0.132 0.868 46 H 0.090 0.910 47 H 0.224 0.776 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.935 9.659 23.267 35.446 hybrid contribution 0.506 1.170 -1.483 1.956 sum -24.429 10.829 21.784 34.476 Atomic orbital electron populations 1.24669 0.95540 1.03106 0.97627 1.22108 0.95888 0.96232 1.02278 1.20836 0.93805 0.95498 1.00537 1.20847 1.00646 0.93805 1.02283 1.22789 0.94472 0.97713 1.01278 1.20895 0.98648 0.98900 0.95685 1.20987 0.79208 0.80012 0.87933 1.90698 1.68070 1.38442 1.49844 1.48817 1.42451 1.18614 1.25288 1.22508 1.03832 0.82304 0.93192 1.22069 1.01053 0.95313 0.92754 0.89125 1.21769 0.97197 0.97457 1.02849 1.22770 0.93647 0.90018 0.96153 0.88673 1.60213 1.04927 1.61158 1.03126 1.21698 0.95759 1.00669 0.89148 1.20899 0.90044 0.83265 0.82029 1.90546 1.43112 1.51703 1.64197 1.42045 1.18342 1.56673 1.06235 1.19010 0.97033 1.38528 0.91159 0.92469 1.26089 1.00540 0.97207 0.97472 1.69795 1.30086 1.46045 1.11404 0.85396 0.78791 0.79130 0.78416 1.18373 1.19906 1.15526 1.23167 0.94234 0.97910 0.89909 0.86610 0.87669 0.85447 0.91690 0.90273 0.91253 0.87628 0.85449 0.85856 0.89613 0.87708 0.92238 0.93256 0.90506 0.83208 0.86761 0.91024 0.77562 0.91136 0.91676 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 14.07 66.64 0.94 -0.69 16 2 C -0.15 -1.72 9.33 23.43 0.22 -1.50 16 3 C -0.11 -1.54 5.98 -18.71 -0.11 -1.65 16 4 C -0.12 -1.40 9.39 71.23 0.67 -0.73 16 5 C -0.14 -2.35 8.43 24.51 0.21 -2.15 16 6 C -0.10 -1.33 5.05 29.10 0.15 -1.18 16 7 C 0.53 11.25 7.89 87.66 0.69 11.94 16 8 O -0.59 -18.47 16.24 -3.03 -0.05 -18.52 16 9 N -0.62 -11.18 3.29 -810.11 -2.67 -13.85 16 10 C 0.10 1.15 6.42 86.53 0.56 1.71 16 11 C -0.09 -1.37 3.34 -9.90 -0.03 -1.40 16 12 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 13 C -0.14 -1.71 8.89 71.98 0.64 -1.07 16 14 C 0.09 1.70 2.93 46.01 0.13 1.83 16 15 H 0.10 1.85 7.54 -2.39 -0.02 1.83 16 16 N -0.66 -18.12 5.95 -489.94 -2.92 -21.04 16 17 C 0.06 1.79 6.03 85.56 0.52 2.31 16 18 C 0.45 20.10 7.82 87.66 0.69 20.79 16 19 O -0.61 -33.37 15.78 -3.07 -0.05 -33.42 16 20 N -0.59 -27.95 5.09 -306.99 -1.56 -29.52 16 21 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 22 H 0.06 3.99 7.39 -2.91 -0.02 3.97 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.93 -56.43 13.96 21.66 0.30 -56.13 16 25 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 29 C 0.07 1.55 6.65 86.61 0.58 2.13 16 30 H 0.12 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.11 0.88 6.31 -2.91 -0.02 0.86 16 32 H 0.13 1.11 5.77 -2.91 -0.02 1.09 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.69 6.66 -2.39 -0.02 0.68 16 35 H 0.07 0.75 8.07 -2.39 -0.02 0.73 16 36 H 0.11 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 1.06 5.01 -2.39 -0.01 1.05 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.61 7.08 -2.38 -0.02 0.60 16 41 H 0.06 0.67 8.13 -2.39 -0.02 0.66 16 42 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.35 10.23 7.91 -89.69 -0.71 9.52 16 45 H 0.11 2.92 8.08 -2.38 -0.02 2.90 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.39 15.34 5.76 -92.71 -0.53 14.80 16 48 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.06 1.63 7.85 -2.39 -0.02 1.61 16 50 H 0.07 1.57 7.77 -2.39 -0.02 1.55 16 Total: -1.00 -82.09 407.30 1.77 -80.32 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.35 Total: 39.45 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.15 Total: 11.57 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -6.84 Total: -120.53 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.10 Total: -51.94 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -82.09 1.77 -80.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215341787.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.869 kcal (2) G-P(sol) polarization free energy of solvation -82.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds