Wall clock time and date at job start Tue Mar 31 2020 18:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30393 * 2 1 4 4 C 1.54385 * 110.34047 * 237.82303 * 2 1 3 5 5 N 1.48415 * 104.48688 * 217.17999 * 4 2 1 6 6 C 1.34776 * 127.82855 * 219.58494 * 5 4 2 7 7 O 1.21283 * 120.00528 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99789 * 0.02600 * 6 5 4 9 9 H 1.08997 * 110.67017 * 56.76851 * 8 6 5 10 10 C 1.54888 * 110.75604 * 179.97438 * 8 6 5 11 11 C 1.54261 * 104.19694 * 156.26019 * 10 8 6 12 12 H 1.08998 * 117.41858 * 116.37028 * 11 10 8 13 13 C 1.53003 * 118.19827 * 271.00374 * 11 10 8 14 14 C 1.53881 * 106.59817 * 336.39285 * 11 10 8 15 15 H 1.08997 * 121.33245 * 138.06210 * 14 11 10 16 16 C 1.54266 * 106.59650 * 359.97438 * 14 11 10 17 17 C 1.48150 * 104.33809 * 39.60850 * 5 4 2 18 18 C 1.54281 * 110.34394 * 122.17550 * 2 1 3 19 19 H 1.09002 * 110.34601 * 0.10662 * 18 2 1 20 20 N 1.46895 * 110.34686 * 237.95249 * 18 2 1 21 21 C 1.46901 * 111.00703 * 154.99767 * 20 18 2 22 22 C 1.50694 * 109.47722 * 180.02562 * 21 20 18 23 23 O 1.21297 * 119.99749 * 359.97438 * 22 21 20 24 24 N 1.34772 * 120.00297 * 180.02562 * 22 21 20 25 25 C 1.37095 * 120.00112 * 180.02562 * 24 22 21 26 26 H 1.08003 * 120.00298 * 359.97438 * 25 24 22 27 27 C 1.38952 * 120.00483 * 180.02562 * 25 24 22 28 28 N 1.31398 * 120.00436 * 180.02562 * 27 25 24 29 29 Si 1.86799 * 119.99538 * 359.97438 * 27 25 24 30 30 H 1.48498 * 109.47246 * 90.00356 * 29 27 25 31 31 H 1.48500 * 109.47254 * 210.00278 * 29 27 25 32 32 H 1.48507 * 109.47111 * 330.00361 * 29 27 25 33 33 H 1.09005 * 109.47312 * 299.29673 * 1 2 3 34 34 H 1.08998 * 109.47322 * 59.29640 * 1 2 3 35 35 H 1.09005 * 109.47284 * 179.30031 * 1 2 3 36 36 H 1.08997 * 110.41271 * 335.94204 * 4 2 1 37 37 H 1.09004 * 110.40474 * 98.37591 * 4 2 1 38 38 H 1.09001 * 110.48693 * 274.94148 * 10 8 6 39 39 H 1.09004 * 110.48665 * 37.58132 * 10 8 6 40 40 H 1.09005 * 117.45839 * 201.21183 * 13 11 10 41 41 H 1.08996 * 117.46058 * 346.01123 * 13 11 10 42 42 H 1.09006 * 110.48810 * 264.93261 * 16 14 11 43 43 H 1.08998 * 110.48637 * 142.29337 * 16 14 11 44 44 H 1.08999 * 110.41112 * 201.60110 * 17 5 4 45 45 H 1.09001 * 110.50499 * 79.22146 * 17 5 4 46 46 H 1.00907 * 110.99957 * 31.04586 * 20 18 2 47 47 H 1.08994 * 109.47034 * 300.00558 * 21 20 18 48 48 H 1.09007 * 109.46449 * 59.99883 * 21 20 18 49 49 H 0.96997 * 120.00026 * 0.02562 * 24 22 21 50 50 H 0.97002 * 120.00626 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2692 -1.4794 -0.7206 6 6 4.4461 -1.6625 -1.3513 7 8 5.3408 -2.2693 -0.8016 8 6 4.6503 -1.1133 -2.7398 9 1 4.4739 -0.0379 -2.7580 10 6 6.0720 -1.4447 -3.2575 11 6 5.9361 -1.3965 -4.7934 12 1 6.5081 -0.6356 -5.3243 13 6 5.5387 -2.6804 -5.5247 14 6 4.4517 -1.6485 -5.1115 15 1 3.9304 -1.0732 -5.8765 16 6 3.7376 -1.8417 -3.7578 17 6 2.8824 -1.9400 0.6333 18 6 2.0663 -0.7703 1.2244 19 1 1.2398 -1.1504 1.8249 20 7 2.9291 0.0981 2.0364 21 6 2.9679 -0.3556 3.4330 22 6 3.8602 0.5578 4.2334 23 8 4.4102 1.4943 3.6933 24 7 4.0479 0.3335 5.5490 25 6 4.8592 1.1647 6.2772 26 1 5.3483 1.9991 5.7966 27 6 5.0532 0.9332 7.6335 28 7 5.8304 1.7302 8.3315 29 14 4.2079 -0.5104 8.4647 30 1 5.0835 -1.7074 8.3888 31 1 3.9463 -0.1781 9.8882 32 1 2.9220 -0.7934 7.7780 33 1 -0.3634 0.5029 0.8962 34 1 -0.3634 0.5247 -0.8836 35 1 -0.3634 -1.0276 -0.0125 36 1 1.3241 -1.4859 -1.5796 37 1 2.3383 -0.0776 -2.0213 38 1 6.7869 -0.6971 -2.9141 39 1 6.3739 -2.4404 -2.9324 40 1 5.7813 -2.7504 -6.5851 41 1 5.5969 -3.6150 -4.9670 42 1 3.6627 -2.9014 -3.5137 43 1 2.7489 -1.3834 -3.7792 44 1 3.7692 -2.1289 1.2383 45 1 2.2682 -2.8383 0.5700 46 1 2.6320 1.0606 1.9770 47 1 1.9609 -0.3357 3.8496 48 1 3.3580 -1.3726 3.4739 49 1 3.6090 -0.4161 5.9806 50 1 5.9662 1.5684 9.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215374044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:46 Heat of formation + Delta-G solvation = -34.600495 kcal Electronic energy + Delta-G solvation = -29201.458987 eV Core-core repulsion = 25229.337957 eV Total energy + Delta-G solvation = -3972.121030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68651 -39.37995 -38.36791 -37.66643 -34.70098 -33.82432 -32.68718 -32.07498 -31.63620 -29.05742 -28.43957 -26.68639 -26.61828 -24.46062 -23.59554 -22.15612 -21.07300 -20.35002 -19.89868 -19.37975 -19.11142 -18.25953 -17.35468 -16.60230 -16.42671 -15.82469 -15.78302 -15.20752 -14.84844 -14.72751 -14.31129 -14.10069 -13.85688 -13.59174 -13.49591 -13.21350 -13.11743 -13.01306 -12.73658 -12.64651 -12.37324 -12.11012 -12.00742 -11.81239 -11.71611 -11.60311 -11.42768 -11.37157 -11.30191 -11.19371 -11.12921 -10.89713 -10.58376 -10.32185 -10.07471 -9.95984 -9.69198 -9.55677 -8.85880 -8.54922 -8.18094 -8.12624 -6.29338 -3.80672 2.59435 2.83330 3.03173 3.08653 3.16171 3.26273 3.75320 3.99774 4.01925 4.11882 4.26596 4.29513 4.37085 4.48990 4.67542 4.75154 4.80638 4.88792 4.90094 5.05451 5.06081 5.13488 5.16909 5.17605 5.21345 5.26375 5.29053 5.39043 5.43903 5.45923 5.51822 5.54149 5.61435 5.66050 5.77673 5.79701 5.81576 5.87728 5.89223 5.92118 5.93639 5.95603 6.08286 6.19858 7.10160 7.49825 7.54603 7.59964 8.15615 8.16259 8.61464 8.96781 9.44125 9.84451 10.83824 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.002370 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.617130 B =11812.400193 C =12711.924083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.091 0.909 4 C 0.109 3.891 5 N -0.614 5.614 6 C 0.543 3.457 7 O -0.535 6.535 8 C -0.108 4.108 9 H 0.103 0.897 10 C -0.079 4.079 11 C -0.161 4.161 12 H 0.111 0.889 13 C -0.154 4.154 14 C -0.170 4.170 15 H 0.113 0.887 16 C -0.082 4.082 17 C 0.112 3.888 18 C 0.075 3.925 19 H 0.063 0.937 20 N -0.658 5.658 21 C 0.047 3.953 22 C 0.450 3.550 23 O -0.564 6.564 24 N -0.591 5.591 25 C -0.304 4.304 26 H 0.119 0.881 27 C 0.041 3.959 28 N -0.881 5.881 29 Si 0.880 3.120 30 H -0.270 1.270 31 H -0.277 1.277 32 H -0.270 1.270 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 -9.368 -25.783 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 H 0.109 0.891 4 C -0.015 4.015 5 N -0.348 5.348 6 C 0.332 3.668 7 O -0.411 6.411 8 C -0.129 4.129 9 H 0.121 0.879 10 C -0.117 4.117 11 C -0.180 4.180 12 H 0.129 0.871 13 C -0.190 4.190 14 C -0.188 4.188 15 H 0.131 0.869 16 C -0.120 4.120 17 C -0.011 4.011 18 C -0.036 4.036 19 H 0.081 0.919 20 N -0.292 5.292 21 C -0.086 4.086 22 C 0.236 3.764 23 O -0.446 6.446 24 N -0.230 5.230 25 C -0.433 4.433 26 H 0.137 0.863 27 C -0.162 4.162 28 N -0.521 5.521 29 Si 0.707 3.293 30 H -0.196 1.196 31 H -0.202 1.202 32 H -0.196 1.196 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.174 0.826 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.019 -9.321 -25.851 29.607 hybrid contribution -1.523 -0.669 1.245 2.078 sum -12.542 -9.990 -24.606 29.369 Atomic orbital electron populations 1.21838 0.93703 1.02170 1.02398 1.22349 0.95987 1.00543 0.94199 0.89065 1.22516 0.86958 0.95397 0.96609 1.48857 1.12732 1.55905 1.17318 1.20041 0.80177 0.79485 0.87067 1.90726 1.40910 1.41945 1.67505 1.22444 0.97556 1.01555 0.91379 0.87918 1.21818 0.94740 1.03607 0.91510 1.23281 0.98238 1.00527 0.95907 0.87137 1.23449 1.01424 0.93742 1.00429 1.23586 0.91310 1.04972 0.98965 0.86897 1.21900 0.97768 1.00679 0.91605 1.22399 0.99999 0.95206 0.83505 1.22576 0.93271 0.93973 0.93777 0.91938 1.60105 1.54432 1.06311 1.08317 1.21774 0.98279 0.99758 0.88746 1.19680 0.86363 0.87887 0.82466 1.90570 1.51666 1.32474 1.69852 1.42198 1.44499 1.28170 1.08147 1.19428 1.22823 1.09773 0.91276 0.86309 1.25040 0.97220 0.97799 0.96157 1.69616 1.36804 1.37274 1.08455 0.86665 0.79715 0.82903 0.80045 1.19572 1.20205 1.19560 0.92079 0.92074 0.92262 0.90884 0.90205 0.90521 0.89943 0.88388 0.88802 0.91026 0.90562 0.89008 0.91354 0.82650 0.93662 0.89522 0.79713 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.91 37.16 0.33 -0.55 16 2 C -0.11 -0.93 3.33 -89.22 -0.30 -1.23 16 3 H 0.09 0.86 7.52 -51.93 -0.39 0.47 16 4 C 0.11 0.84 5.60 -2.26 -0.01 0.83 16 5 N -0.61 -7.07 3.32 -169.08 -0.56 -7.63 16 6 C 0.54 7.34 7.24 -10.98 -0.08 7.26 16 7 O -0.53 -9.62 15.99 5.56 0.09 -9.53 16 8 C -0.11 -1.07 2.47 -89.77 -0.22 -1.29 16 9 H 0.10 0.92 7.85 -51.93 -0.41 0.52 16 10 C -0.08 -0.81 5.70 -25.08 -0.14 -0.96 16 11 C -0.16 -1.29 6.85 -89.50 -0.61 -1.91 16 12 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.15 -1.09 10.21 -25.42 -0.26 -1.35 16 14 C -0.17 -1.20 7.04 -88.19 -0.62 -1.82 16 15 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 16 C -0.08 -0.62 5.59 -25.06 -0.14 -0.76 16 17 C 0.11 1.34 6.75 -2.41 -0.02 1.32 16 18 C 0.08 0.82 3.04 -66.32 -0.20 0.62 16 19 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 20 N -0.66 -10.04 5.92 -106.52 -0.63 -10.67 16 21 C 0.05 0.78 6.02 -4.98 -0.03 0.75 16 22 C 0.45 10.39 7.82 -10.99 -0.09 10.31 16 23 O -0.56 -15.45 15.78 5.54 0.09 -15.36 16 24 N -0.59 -14.32 5.09 -10.97 -0.06 -14.37 16 25 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 26 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 27 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 28 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 29 Si 0.88 19.64 27.74 -169.99 -4.71 14.93 16 30 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 31 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 32 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.07 0.43 7.85 -51.93 -0.41 0.03 16 37 H 0.08 0.52 6.75 -51.93 -0.35 0.17 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.99 7.43 -51.93 -0.39 0.60 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 43 H 0.08 0.44 7.16 -51.93 -0.37 0.07 16 44 H 0.09 1.41 7.78 -51.93 -0.40 1.00 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.35 5.50 7.75 -39.29 -0.30 5.19 16 47 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 48 H 0.09 1.33 8.13 -51.92 -0.42 0.91 16 49 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 50 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -35.82 397.19 -9.92 -45.74 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -8.26 Total: 12.87 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.64 Total: 3.36 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.47 Total: -57.99 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.18 Total: -24.89 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.82 -9.92 -45.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215374044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.141 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds