Wall clock time and date at job start Tue Mar 31 2020 18:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.30393 * 2 1 4 4 C 1.54385 * 110.34047 * 237.82303 * 2 1 3 5 5 N 1.48415 * 104.48688 * 217.17999 * 4 2 1 6 6 C 1.34776 * 127.82855 * 219.58494 * 5 4 2 7 7 O 1.21283 * 120.00528 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99789 * 0.02600 * 6 5 4 9 9 H 1.08997 * 110.67017 * 56.76851 * 8 6 5 10 10 C 1.54888 * 110.75604 * 179.97438 * 8 6 5 11 11 C 1.54261 * 104.19694 * 156.26019 * 10 8 6 12 12 H 1.08998 * 117.41858 * 116.37028 * 11 10 8 13 13 C 1.53003 * 118.19827 * 271.00374 * 11 10 8 14 14 C 1.53881 * 106.59817 * 336.39285 * 11 10 8 15 15 H 1.08997 * 121.33245 * 138.06210 * 14 11 10 16 16 C 1.54266 * 106.59650 * 359.97438 * 14 11 10 17 17 C 1.48150 * 104.33809 * 39.60850 * 5 4 2 18 18 C 1.54281 * 110.34394 * 122.17550 * 2 1 3 19 19 H 1.09002 * 110.34601 * 0.10662 * 18 2 1 20 20 N 1.46895 * 110.34686 * 237.95249 * 18 2 1 21 21 C 1.46901 * 111.00703 * 154.99767 * 20 18 2 22 22 C 1.50694 * 109.47722 * 180.02562 * 21 20 18 23 23 O 1.21297 * 119.99749 * 359.97438 * 22 21 20 24 24 N 1.34772 * 120.00297 * 180.02562 * 22 21 20 25 25 C 1.37095 * 120.00112 * 180.02562 * 24 22 21 26 26 H 1.08003 * 120.00298 * 359.97438 * 25 24 22 27 27 C 1.38952 * 120.00483 * 180.02562 * 25 24 22 28 28 N 1.31398 * 120.00436 * 180.02562 * 27 25 24 29 29 Si 1.86799 * 119.99538 * 359.97438 * 27 25 24 30 30 H 1.48498 * 109.47246 * 90.00356 * 29 27 25 31 31 H 1.48500 * 109.47254 * 210.00278 * 29 27 25 32 32 H 1.48507 * 109.47111 * 330.00361 * 29 27 25 33 33 H 1.09005 * 109.47312 * 299.29673 * 1 2 3 34 34 H 1.08998 * 109.47322 * 59.29640 * 1 2 3 35 35 H 1.09005 * 109.47284 * 179.30031 * 1 2 3 36 36 H 1.08997 * 110.41271 * 335.94204 * 4 2 1 37 37 H 1.09004 * 110.40474 * 98.37591 * 4 2 1 38 38 H 1.09001 * 110.48693 * 274.94148 * 10 8 6 39 39 H 1.09004 * 110.48665 * 37.58132 * 10 8 6 40 40 H 1.09005 * 117.45839 * 201.21183 * 13 11 10 41 41 H 1.08996 * 117.46058 * 346.01123 * 13 11 10 42 42 H 1.09006 * 110.48810 * 264.93261 * 16 14 11 43 43 H 1.08998 * 110.48637 * 142.29337 * 16 14 11 44 44 H 1.08999 * 110.41112 * 201.60110 * 17 5 4 45 45 H 1.09001 * 110.50499 * 79.22146 * 17 5 4 46 46 H 1.00907 * 110.99957 * 31.04586 * 20 18 2 47 47 H 1.08994 * 109.47034 * 300.00558 * 21 20 18 48 48 H 1.09007 * 109.46449 * 59.99883 * 21 20 18 49 49 H 0.96997 * 120.00026 * 0.02562 * 24 22 21 50 50 H 0.97002 * 120.00626 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0666 -0.7709 -1.2252 5 7 3.2692 -1.4794 -0.7206 6 6 4.4461 -1.6625 -1.3513 7 8 5.3408 -2.2693 -0.8016 8 6 4.6503 -1.1133 -2.7398 9 1 4.4739 -0.0379 -2.7580 10 6 6.0720 -1.4447 -3.2575 11 6 5.9361 -1.3965 -4.7934 12 1 6.5081 -0.6356 -5.3243 13 6 5.5387 -2.6804 -5.5247 14 6 4.4517 -1.6485 -5.1115 15 1 3.9304 -1.0732 -5.8765 16 6 3.7376 -1.8417 -3.7578 17 6 2.8824 -1.9400 0.6333 18 6 2.0663 -0.7703 1.2244 19 1 1.2398 -1.1504 1.8249 20 7 2.9291 0.0981 2.0364 21 6 2.9679 -0.3556 3.4330 22 6 3.8602 0.5578 4.2334 23 8 4.4102 1.4943 3.6933 24 7 4.0479 0.3335 5.5490 25 6 4.8592 1.1647 6.2772 26 1 5.3483 1.9991 5.7966 27 6 5.0532 0.9332 7.6335 28 7 5.8304 1.7302 8.3315 29 14 4.2079 -0.5104 8.4647 30 1 5.0835 -1.7074 8.3888 31 1 3.9463 -0.1781 9.8882 32 1 2.9220 -0.7934 7.7780 33 1 -0.3634 0.5029 0.8962 34 1 -0.3634 0.5247 -0.8836 35 1 -0.3634 -1.0276 -0.0125 36 1 1.3241 -1.4859 -1.5796 37 1 2.3383 -0.0776 -2.0213 38 1 6.7869 -0.6971 -2.9141 39 1 6.3739 -2.4404 -2.9324 40 1 5.7813 -2.7504 -6.5851 41 1 5.5969 -3.6150 -4.9670 42 1 3.6627 -2.9014 -3.5137 43 1 2.7489 -1.3834 -3.7792 44 1 3.7692 -2.1289 1.2383 45 1 2.2682 -2.8383 0.5700 46 1 2.6320 1.0606 1.9770 47 1 1.9609 -0.3357 3.8496 48 1 3.3580 -1.3726 3.4739 49 1 3.6090 -0.4161 5.9806 50 1 5.9662 1.5684 9.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215374044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:45 Heat of formation + Delta-G solvation = -61.463959 kcal Electronic energy + Delta-G solvation = -29202.623874 eV Core-core repulsion = 25229.337957 eV Total energy + Delta-G solvation = -3973.285917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54753 -40.46021 -39.85046 -38.70485 -36.23060 -35.53311 -33.80243 -33.49746 -32.78317 -30.07695 -29.18923 -28.10732 -27.28613 -25.99073 -24.62172 -23.01238 -21.76335 -21.36556 -21.05837 -20.55875 -20.29597 -19.93133 -18.34252 -17.72222 -17.24617 -17.17217 -16.81497 -16.72827 -16.26351 -15.84616 -15.64009 -15.25618 -14.91457 -14.72384 -14.42584 -14.30997 -14.19125 -14.12570 -13.88755 -13.80472 -13.56693 -13.13085 -13.07878 -12.92021 -12.82609 -12.53908 -12.44057 -12.30035 -12.17281 -12.08755 -12.01039 -12.00060 -11.86727 -11.58218 -11.54846 -10.95044 -10.84109 -10.54016 -10.46828 -10.28138 -9.78914 -9.27090 -8.44017 -6.05260 1.27296 1.33975 1.42385 1.60829 1.91812 1.97691 2.20758 2.64859 2.68659 3.11976 3.26445 3.35433 3.54711 3.66143 3.68734 3.81689 4.01215 4.11537 4.15889 4.17614 4.23071 4.26163 4.37169 4.41630 4.45053 4.49074 4.53307 4.60220 4.61459 4.64786 4.70337 4.73402 4.83881 4.90892 4.95135 5.00825 5.09335 5.11575 5.16112 5.26896 5.28778 5.32482 5.42236 5.44964 5.51377 5.88646 6.06834 6.38448 6.56616 6.59794 6.84768 7.16769 7.36139 7.92927 8.73723 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.002370 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.617130 B =11812.400193 C =12711.924083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.076 0.924 4 C 0.107 3.893 5 N -0.616 5.616 6 C 0.531 3.469 7 O -0.596 6.596 8 C -0.103 4.103 9 H 0.115 0.885 10 C -0.084 4.084 11 C -0.172 4.172 12 H 0.121 0.879 13 C -0.154 4.154 14 C -0.157 4.157 15 H 0.137 0.863 16 C -0.075 4.075 17 C 0.107 3.893 18 C 0.078 3.922 19 H 0.089 0.911 20 N -0.683 5.683 21 C 0.063 3.937 22 C 0.447 3.553 23 O -0.616 6.616 24 N -0.590 5.590 25 C -0.330 4.330 26 H 0.053 0.947 27 C -0.017 4.017 28 N -0.934 5.934 29 Si 0.967 3.033 30 H -0.260 1.260 31 H -0.272 1.272 32 H -0.229 1.229 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.105 0.895 44 H 0.049 0.951 45 H 0.097 0.903 46 H 0.348 0.652 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.390 0.610 50 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -11.505 -27.530 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.095 0.905 4 C -0.015 4.015 5 N -0.348 5.348 6 C 0.322 3.678 7 O -0.477 6.477 8 C -0.124 4.124 9 H 0.133 0.867 10 C -0.122 4.122 11 C -0.190 4.190 12 H 0.139 0.861 13 C -0.191 4.191 14 C -0.175 4.175 15 H 0.155 0.845 16 C -0.113 4.113 17 C -0.017 4.017 18 C -0.032 4.032 19 H 0.107 0.893 20 N -0.317 5.317 21 C -0.069 4.069 22 C 0.235 3.765 23 O -0.500 6.500 24 N -0.232 5.232 25 C -0.459 4.459 26 H 0.071 0.929 27 C -0.215 4.215 28 N -0.574 5.574 29 Si 0.786 3.214 30 H -0.185 1.185 31 H -0.197 1.197 32 H -0.152 1.152 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.122 0.878 49 H 0.225 0.775 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.517 -11.456 -27.630 33.696 hybrid contribution -0.056 0.093 1.747 1.750 sum -15.573 -11.362 -25.883 32.273 Atomic orbital electron populations 1.21800 0.91274 1.03323 1.02980 1.22328 0.97771 0.99344 0.93037 0.90524 1.22837 0.85826 0.96126 0.96716 1.49007 1.13245 1.55309 1.17210 1.20741 0.80001 0.78851 0.88216 1.90689 1.43049 1.44865 1.69119 1.22464 0.97819 1.02216 0.89876 0.86672 1.21778 0.95099 1.01571 0.93766 1.23221 0.99912 1.01805 0.94066 0.86123 1.23529 1.01488 0.92928 1.01158 1.23717 0.90394 1.04391 0.98968 0.84535 1.21904 0.98547 0.99926 0.90897 1.22497 0.98809 0.96939 0.83440 1.22701 0.92959 0.93187 0.94382 0.89290 1.60057 1.56832 1.06828 1.08031 1.21665 0.98370 0.98183 0.88678 1.21026 0.85628 0.87648 0.82226 1.90543 1.53613 1.35014 1.70874 1.42025 1.44364 1.28250 1.08560 1.18996 1.24778 1.09774 0.92391 0.92879 1.26154 0.97554 1.01595 0.96213 1.69800 1.38487 1.39926 1.09212 0.85345 0.79976 0.77503 0.78561 1.18483 1.19711 1.15172 0.92573 0.90500 0.90785 0.87726 0.88561 0.91960 0.92635 0.86525 0.89894 0.92078 0.87698 0.93211 0.88531 0.83167 0.89684 0.87846 0.77452 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.91 71.98 0.64 -0.42 16 2 C -0.11 -1.43 3.33 -9.89 -0.03 -1.47 16 3 H 0.08 1.31 7.52 -2.39 -0.02 1.29 16 4 C 0.11 1.27 5.60 86.48 0.48 1.75 16 5 N -0.62 -13.44 3.32 -807.24 -2.68 -16.12 16 6 C 0.53 14.67 7.24 87.66 0.63 15.31 16 7 O -0.60 -23.03 15.99 -3.04 -0.05 -23.08 16 8 C -0.10 -1.99 2.47 -10.24 -0.03 -2.01 16 9 H 0.12 1.92 7.85 -2.39 -0.02 1.91 16 10 C -0.08 -1.84 5.70 31.67 0.18 -1.66 16 11 C -0.17 -2.61 6.85 -10.07 -0.07 -2.68 16 12 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.15 -1.97 10.21 31.45 0.32 -1.65 16 14 C -0.16 -1.78 7.04 -9.22 -0.06 -1.85 16 15 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 16 C -0.08 -0.95 5.59 31.68 0.18 -0.78 16 17 C 0.11 2.40 6.75 86.53 0.58 2.98 16 18 C 0.08 1.50 3.04 45.82 0.14 1.64 16 19 H 0.09 1.30 7.39 -2.39 -0.02 1.28 16 20 N -0.68 -20.28 5.92 -490.91 -2.91 -23.19 16 21 C 0.06 1.98 6.02 85.55 0.52 2.50 16 22 C 0.45 20.94 7.82 87.66 0.69 21.63 16 23 O -0.62 -35.55 15.78 -3.08 -0.05 -35.59 16 24 N -0.59 -28.77 5.09 -306.99 -1.56 -30.34 16 25 C -0.33 -19.93 10.16 84.04 0.85 -19.08 16 26 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 27 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 28 N -0.93 -57.47 13.96 21.66 0.30 -57.17 16 29 Si 0.97 39.65 27.74 68.60 1.90 41.55 16 30 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 31 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 32 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 33 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.40 8.12 -2.38 -0.02 0.38 16 36 H 0.10 0.68 7.85 -2.39 -0.02 0.66 16 37 H 0.10 0.87 6.75 -2.39 -0.02 0.85 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.49 7.43 -2.38 -0.02 1.47 16 40 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 0.93 8.04 -2.38 -0.02 0.91 16 43 H 0.10 0.75 7.16 -2.39 -0.02 0.73 16 44 H 0.05 1.55 7.78 -2.39 -0.02 1.54 16 45 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.35 10.77 7.75 -89.69 -0.69 10.07 16 47 H 0.09 2.04 8.07 -2.39 -0.02 2.02 16 48 H 0.10 2.95 8.13 -2.38 -0.02 2.93 16 49 H 0.39 15.68 5.76 -92.71 -0.53 15.15 16 50 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -88.67 397.19 0.12 -88.55 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: -0.33 Total: 41.63 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.49 Total: 13.75 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -6.85 Total: -126.82 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.10 Total: -58.67 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 1.90 Total: 41.55 kcal Total: -88.67 0.12 -88.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215374044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.089 kcal (2) G-P(sol) polarization free energy of solvation -88.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds